Wall clock time and date at job start Wed Apr 1 2020 04:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30184 * 126.79900 * 2 1 4 4 O 1.20920 * 111.60051 * 180.25567 * 3 2 1 5 5 C 1.34042 * 111.57002 * 359.74404 * 4 3 2 6 6 C 1.50703 * 126.77500 * 180.02562 * 5 4 3 7 7 C 1.35452 * 106.44640 * 0.02562 * 5 4 3 8 8 C 1.50688 * 128.00503 * 179.97438 * 7 5 4 9 9 C 1.53007 * 109.47438 * 90.00498 * 8 7 5 10 10 C 1.50697 * 109.47439 * 180.02562 * 9 8 7 11 11 O 1.21281 * 120.00078 * 359.97438 * 10 9 8 12 12 N 1.34776 * 119.99972 * 180.02562 * 10 9 8 13 13 C 1.47618 * 126.91887 * 0.02562 * 12 10 9 14 14 C 1.54343 * 107.05172 * 204.98444 * 13 12 10 15 15 C 1.53093 * 104.72930 * 357.71199 * 14 13 12 16 16 C 1.53640 * 111.77973 * 218.76906 * 15 14 13 17 17 C 1.55195 * 101.41408 * 272.09087 * 16 15 14 18 18 N 1.47566 * 105.00085 * 324.51011 * 17 16 15 19 19 C 1.36938 * 125.66949 * 203.83397 * 18 17 16 20 20 H 1.07998 * 119.99909 * 180.02562 * 19 18 17 21 21 C 1.38818 * 120.00222 * 0.03273 * 19 18 17 22 22 N 1.31621 * 119.99506 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00065 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47134 * 89.99743 * 23 21 19 25 25 H 1.48499 * 109.46882 * 210.00116 * 23 21 19 26 26 H 1.48498 * 109.46975 * 329.99915 * 23 21 19 27 27 C 1.47405 * 108.65549 * 23.86300 * 18 17 16 28 28 C 1.48409 * 126.91988 * 179.97438 * 12 10 9 29 29 H 1.09000 * 109.47358 * 270.15935 * 1 2 3 30 30 H 1.09000 * 109.47756 * 30.16425 * 1 2 3 31 31 H 1.09001 * 109.46727 * 150.16308 * 1 2 3 32 32 H 1.08996 * 109.46451 * 269.99980 * 6 5 4 33 33 H 1.08999 * 109.47484 * 29.99699 * 6 5 4 34 34 H 1.08996 * 109.47054 * 150.00183 * 6 5 4 35 35 H 1.09001 * 109.47435 * 330.00277 * 8 7 5 36 36 H 1.09005 * 109.47469 * 210.00322 * 8 7 5 37 37 H 1.09001 * 109.46988 * 59.99505 * 9 8 7 38 38 H 1.09005 * 109.46822 * 299.99801 * 9 8 7 39 39 H 1.09002 * 109.91435 * 85.62905 * 13 12 10 40 40 H 1.09001 * 109.91854 * 324.33731 * 13 12 10 41 41 H 1.09002 * 110.40541 * 116.55967 * 14 13 12 42 42 H 1.08998 * 110.40672 * 238.86652 * 14 13 12 43 43 H 1.09001 * 111.03286 * 30.11429 * 16 15 14 44 44 H 1.08997 * 111.03929 * 154.05271 * 16 15 14 45 45 H 1.08999 * 110.32886 * 205.63343 * 17 16 15 46 46 H 1.08996 * 110.42474 * 83.43608 * 17 16 15 47 47 H 0.97000 * 119.99151 * 180.02562 * 22 21 19 48 48 H 1.08999 * 109.98284 * 238.53908 * 27 18 17 49 49 H 1.08995 * 110.02197 * 117.24788 * 27 18 17 50 50 H 1.09000 * 110.68222 * 260.85401 * 28 12 10 51 51 H 1.08997 * 110.67922 * 24.02597 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0050 5 6 3.6024 -0.6067 -0.0035 6 6 4.9022 -1.3694 -0.0079 7 6 2.3539 -1.1320 0.0027 8 6 1.9592 -2.5863 0.0061 9 6 1.8319 -3.0768 1.4498 10 6 1.4377 -4.5313 1.4533 11 8 1.2742 -5.1178 0.4044 12 7 1.2659 -5.1801 2.6220 13 6 1.4220 -4.6196 3.9787 14 6 1.7520 -5.7975 4.9199 15 6 1.7109 -7.0366 4.0218 16 6 1.0799 -8.2399 4.7391 17 6 2.3170 -8.8644 5.4378 18 7 3.4336 -8.6554 4.4959 19 6 4.5814 -9.4001 4.4404 20 1 5.3426 -9.1653 3.7112 21 6 4.7664 -10.4569 5.3212 22 7 3.8388 -10.7428 6.2102 23 14 6.3319 -11.4733 5.2449 24 1 7.3552 -10.8741 6.1389 25 1 6.0425 -12.8618 5.6846 26 1 6.8425 -11.4919 3.8506 27 6 3.1082 -7.5112 3.6254 28 6 0.8808 -6.6018 2.8043 29 1 -0.3634 0.0029 1.0276 30 1 -0.3634 0.8885 -0.5164 31 1 -0.3633 -0.8915 -0.5113 32 1 5.2110 -1.5548 -1.0366 33 1 5.6682 -0.7849 0.5016 34 1 4.7674 -2.3200 0.5080 35 1 2.7206 -3.1707 -0.5104 36 1 1.0028 -2.7044 -0.5033 37 1 1.0705 -2.4924 1.9663 38 1 2.7883 -2.9587 1.9593 39 1 0.4935 -4.1424 4.2923 40 1 2.2368 -3.8957 3.9900 41 1 2.7455 -5.6730 5.3506 42 1 1.0037 -5.8749 5.7087 43 1 0.3399 -7.9153 5.4706 44 1 0.6415 -8.9360 4.0239 45 1 2.1587 -9.9294 5.6072 46 1 2.5174 -8.3570 6.3814 47 1 3.9683 -11.4810 6.8259 48 1 3.1131 -7.8243 2.5813 49 1 3.8310 -6.7095 3.7771 50 1 -0.1850 -6.6877 3.0160 51 1 1.1485 -7.1887 1.9257 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041824638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:29 Heat of formation + Delta-G solvation = 24.728059 kcal Electronic energy + Delta-G solvation = -30877.424820 eV Core-core repulsion = 26779.650329 eV Total energy + Delta-G solvation = -4097.774491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.90728 -41.43913 -39.80649 -37.24073 -36.77981 -34.74493 -34.49595 -32.85013 -31.92415 -30.63834 -29.91770 -29.58678 -28.67610 -27.54977 -26.32882 -24.70473 -23.80562 -22.34299 -22.11748 -21.03248 -20.34103 -19.89768 -18.85784 -18.64143 -18.21635 -17.59371 -17.12989 -16.76742 -16.44109 -16.00995 -15.67133 -15.61172 -15.20553 -14.90987 -14.46820 -14.31380 -14.25367 -14.12723 -13.95774 -13.83930 -13.72012 -13.58683 -13.46174 -13.30901 -13.15297 -13.10813 -12.93425 -12.89334 -12.71460 -12.56702 -12.34536 -12.25747 -12.02181 -11.79152 -11.73920 -11.49609 -11.39299 -11.22707 -10.94465 -10.76350 -10.72541 -10.05813 -9.65006 -8.87742 -7.77729 -5.21261 0.48596 1.19220 1.45807 1.47201 1.56018 1.65429 1.99989 2.21715 2.48855 3.22226 3.29663 3.42680 3.53979 3.58825 3.69323 3.76728 3.86697 3.92008 4.02714 4.25868 4.26228 4.29923 4.35762 4.39491 4.41561 4.55945 4.65175 4.66593 4.68090 4.69744 4.72821 4.75066 4.80648 4.84111 4.89798 4.92828 4.97386 5.03812 5.07101 5.09646 5.12725 5.17214 5.23893 5.34787 5.37901 5.41263 5.47010 5.69142 5.84808 6.32473 6.60828 7.11904 7.16686 7.30958 7.78652 8.42526 9.23770 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.002222 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.880960 B =12596.256524 C =13594.046868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.020 3.980 3 N -0.400 5.400 4 O 0.080 5.920 5 C -0.022 4.022 6 C -0.078 4.078 7 C -0.208 4.208 8 C -0.017 4.017 9 C -0.119 4.119 10 C 0.528 3.472 11 O -0.588 6.588 12 N -0.621 5.621 13 C 0.106 3.894 14 C -0.113 4.113 15 C -0.074 4.074 16 C -0.116 4.116 17 C 0.157 3.843 18 N -0.627 5.627 19 C -0.240 4.240 20 H 0.074 0.926 21 C -0.065 4.065 22 N -0.946 5.946 23 Si 0.977 3.023 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.273 1.273 27 C 0.155 3.845 28 C 0.126 3.874 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.097 0.903 44 H 0.060 0.940 45 H 0.067 0.933 46 H -0.006 1.006 47 H 0.247 0.753 48 H 0.006 0.994 49 H 0.019 0.981 50 H 0.094 0.906 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.292 21.702 -7.823 24.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.139 4.139 3 N -0.110 5.110 4 O 0.018 5.982 5 C -0.086 4.086 6 C -0.135 4.135 7 C -0.212 4.212 8 C -0.055 4.055 9 C -0.159 4.159 10 C 0.318 3.682 11 O -0.468 6.468 12 N -0.354 5.354 13 C -0.016 4.016 14 C -0.151 4.151 15 C -0.075 4.075 16 C -0.154 4.154 17 C 0.032 3.968 18 N -0.353 5.353 19 C -0.369 4.369 20 H 0.091 0.909 21 C -0.257 4.257 22 N -0.596 5.596 23 Si 0.806 3.194 24 H -0.212 1.212 25 H -0.218 1.218 26 H -0.198 1.198 27 C 0.030 3.970 28 C 0.003 3.997 29 H 0.113 0.887 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.133 0.867 38 H 0.127 0.873 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.083 0.917 42 H 0.117 0.883 43 H 0.115 0.885 44 H 0.079 0.921 45 H 0.085 0.915 46 H 0.012 0.988 47 H 0.057 0.943 48 H 0.024 0.976 49 H 0.037 0.963 50 H 0.112 0.888 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.454 22.626 -8.369 25.250 hybrid contribution 1.027 -1.710 0.084 1.996 sum -6.427 20.917 -8.285 23.398 Atomic orbital electron populations 1.20313 0.84298 1.04423 1.04530 1.23959 1.00152 0.88334 1.01448 1.73845 0.89814 1.25068 1.22260 1.84764 1.21488 1.23517 1.68386 1.24870 0.99450 0.83190 1.01069 1.20558 0.88935 0.98706 1.05333 1.20990 0.91721 0.97340 1.11170 1.19487 1.03216 0.87060 0.95742 1.21593 1.05158 0.90024 0.99080 1.20844 0.75954 0.89896 0.81468 1.90699 1.53818 1.70198 1.32122 1.49053 1.67773 1.11972 1.06632 1.22396 1.03400 0.96144 0.79616 1.22361 1.03170 0.92028 0.97511 1.21488 0.94245 0.96027 0.95755 1.22726 0.97511 0.95876 0.99322 1.21754 0.84926 1.00352 0.89777 1.44953 1.18487 1.33597 1.38238 1.19392 0.94995 1.08339 1.14181 0.90857 1.25582 1.01627 1.00345 0.98169 1.70053 1.34567 1.31854 1.23091 0.85094 0.78917 0.77653 0.77765 1.21192 1.21805 1.19834 1.21176 0.94348 0.88977 0.92495 1.22240 0.99084 0.81808 0.96537 0.88685 0.90390 0.88882 0.88127 0.88338 0.88229 0.90340 0.90087 0.86662 0.87335 0.88259 0.89039 0.91656 0.88331 0.88467 0.92140 0.91478 0.98794 0.94293 0.97629 0.96323 0.88763 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.39 71.23 0.74 -0.23 16 2 C 0.02 0.37 7.33 43.57 0.32 0.69 16 3 N -0.40 -9.08 12.07 -49.55 -0.60 -9.67 16 4 O 0.08 1.66 11.20 71.61 0.80 2.46 16 5 C -0.02 -0.37 7.49 25.04 0.19 -0.18 16 6 C -0.08 -0.76 10.25 71.24 0.73 -0.03 16 7 C -0.21 -3.54 5.57 -19.74 -0.11 -3.65 16 8 C -0.02 -0.28 4.76 29.85 0.14 -0.13 16 9 C -0.12 -1.80 4.76 29.85 0.14 -1.66 16 10 C 0.53 12.55 7.89 87.66 0.69 13.24 16 11 O -0.59 -19.03 16.21 -3.03 -0.05 -19.08 16 12 N -0.62 -14.17 3.31 -810.17 -2.68 -16.85 16 13 C 0.11 1.75 6.77 86.62 0.59 2.34 16 14 C -0.11 -2.59 6.04 31.08 0.19 -2.40 16 15 C -0.07 -2.25 0.68 -51.78 -0.04 -2.29 16 16 C -0.12 -3.91 6.05 31.56 0.19 -3.72 16 17 C 0.16 7.42 5.84 86.93 0.51 7.93 16 18 N -0.63 -32.14 3.41 -693.04 -2.36 -34.51 16 19 C -0.24 -13.59 10.28 84.03 0.86 -12.73 16 20 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 21 C -0.06 -3.66 5.49 84.86 0.47 -3.20 16 22 N -0.95 -55.82 10.10 21.65 0.22 -55.61 16 23 Si 0.98 45.72 29.55 68.60 2.03 47.75 16 24 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 27 C 0.16 6.40 6.46 86.14 0.56 6.96 16 28 C 0.13 3.40 6.04 86.23 0.52 3.92 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.09 0.96 7.65 -2.39 -0.02 0.94 16 32 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.10 0.89 8.05 -2.39 -0.02 0.87 16 35 H 0.08 1.42 8.04 -2.39 -0.02 1.40 16 36 H 0.08 1.41 7.61 -2.38 -0.02 1.40 16 37 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.11 1.36 7.91 -2.38 -0.02 1.34 16 39 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.09 1.20 7.55 -2.39 -0.02 1.18 16 41 H 0.06 1.74 7.61 -2.39 -0.02 1.72 16 42 H 0.10 1.90 7.56 -2.39 -0.02 1.88 16 43 H 0.10 2.62 7.63 -2.39 -0.02 2.60 16 44 H 0.06 2.08 8.08 -2.39 -0.02 2.06 16 45 H 0.07 3.70 5.89 -2.39 -0.01 3.68 16 46 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 47 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 48 H 0.01 0.25 7.57 -2.39 -0.02 0.24 16 49 H 0.02 0.77 7.60 -2.39 -0.02 0.76 16 50 H 0.09 2.14 8.07 -2.39 -0.02 2.12 16 51 H 0.06 1.89 7.40 -2.39 -0.02 1.87 16 Total: -1.00 -75.72 406.60 4.96 -70.76 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 0.92 Total: 9.89 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 6.69 Total: 4.86 kcal Atomic # 7 Polarization: -111.22 SS G_CDS: -5.42 Total: -116.64 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.75 Total: -16.62 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -75.72 4.96 -70.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041824638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.488 kcal (2) G-P(sol) polarization free energy of solvation -75.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds