Wall clock time and date at job start Wed Apr 1 2020 05:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34264 * 126.52468 * 2 1 4 4 C 1.34051 * 108.22435 * 179.97438 * 3 2 1 5 5 C 1.50696 * 125.37681 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47530 * 299.96711 * 5 4 3 7 7 C 1.53001 * 109.47113 * 59.96430 * 5 4 3 8 8 N 1.29935 * 109.24438 * 0.02562 * 4 3 2 9 9 C 1.36070 * 108.47835 * 359.97438 * 8 4 3 10 10 C 1.47421 * 126.44891 * 179.97438 * 9 8 4 11 11 O 1.21611 * 120.00111 * 186.55387 * 10 9 8 12 12 N 1.34778 * 119.99847 * 6.55758 * 10 9 8 13 13 C 1.46589 * 119.75448 * 187.21516 * 12 10 9 14 14 C 1.53885 * 110.71185 * 227.75458 * 13 12 10 15 15 C 1.51980 * 107.29082 * 308.18076 * 14 13 12 16 16 H 1.08997 * 111.01985 * 303.48256 * 15 14 13 17 17 C 1.53692 * 115.00609 * 175.44066 * 15 14 13 18 18 C 1.55303 * 101.81545 * 206.53613 * 17 15 14 19 19 N 1.48152 * 107.04312 * 22.44531 * 18 17 15 20 20 C 1.36931 * 126.40135 * 185.00387 * 19 18 17 21 21 H 1.07997 * 120.00598 * 179.97438 * 20 19 18 22 22 C 1.38816 * 119.99638 * 0.02562 * 20 19 18 23 23 N 1.31621 * 120.00267 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99925 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47357 * 89.99409 * 24 22 20 26 26 H 1.48500 * 109.47405 * 209.99586 * 24 22 20 27 27 H 1.48507 * 109.46972 * 329.99617 * 24 22 20 28 28 C 1.45509 * 107.20055 * 5.00593 * 19 18 17 29 29 H 1.08994 * 109.56774 * 86.62438 * 28 19 18 30 30 C 1.47794 * 119.75421 * 6.94706 * 12 10 9 31 31 H 1.08996 * 109.47001 * 270.02194 * 1 2 3 32 32 H 1.09008 * 109.46976 * 30.02068 * 1 2 3 33 33 H 1.08996 * 109.47027 * 150.01971 * 1 2 3 34 34 H 1.08999 * 109.47557 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.46830 * 299.99930 * 6 5 4 36 36 H 1.08999 * 109.46910 * 59.99347 * 6 5 4 37 37 H 1.08993 * 109.47710 * 180.02562 * 6 5 4 38 38 H 1.09000 * 109.47328 * 59.99804 * 7 5 4 39 39 H 1.09000 * 109.47638 * 180.02562 * 7 5 4 40 40 H 1.09001 * 109.47216 * 299.99953 * 7 5 4 41 41 H 1.09005 * 109.23296 * 348.07415 * 13 12 10 42 42 H 1.09004 * 109.22801 * 107.47436 * 13 12 10 43 43 H 1.09000 * 109.89273 * 67.62925 * 14 13 12 44 44 H 1.09002 * 109.89149 * 188.66212 * 14 13 12 45 45 H 1.09000 * 110.96241 * 324.66784 * 17 15 14 46 46 H 1.09008 * 110.96041 * 88.40718 * 17 15 14 47 47 H 1.08995 * 109.91711 * 263.09483 * 18 17 15 48 48 H 1.08997 * 110.08541 * 141.89031 * 18 17 15 49 49 H 0.96996 * 119.99932 * 180.02562 * 23 22 20 50 50 H 1.08997 * 110.06562 * 247.95959 * 30 12 10 51 51 H 1.09005 * 110.06719 * 9.52516 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6580 0.0006 5 6 4.7930 1.5506 0.0013 6 6 4.7778 2.4335 -1.2482 7 6 4.7756 2.4343 1.2503 8 7 3.6002 -0.6411 0.0004 9 6 2.3170 -1.0936 0.0002 10 6 1.8853 -2.5032 -0.0005 11 8 0.7068 -2.7782 -0.1208 12 7 2.7968 -3.4872 0.1321 13 6 2.3864 -4.8853 -0.0276 14 6 2.9299 -5.7472 1.1256 15 6 4.4238 -5.4843 1.2208 16 1 4.9185 -5.6923 0.2721 17 6 5.1320 -6.1783 2.3951 18 6 6.3411 -5.2347 2.6396 19 7 5.9802 -3.9121 2.0781 20 6 6.7956 -2.8152 1.9937 21 1 6.4237 -1.8978 1.5622 22 6 8.1006 -2.8830 2.4620 23 7 8.5541 -4.0013 2.9875 24 14 9.2128 -1.3865 2.3476 25 1 9.0754 -0.5721 3.5818 26 1 10.6230 -1.8279 2.2003 27 1 8.8241 -0.5698 1.1698 28 6 4.5974 -3.9963 1.6330 29 1 3.9316 -3.7685 2.4653 30 6 4.2038 -3.1481 0.4316 31 1 -0.3633 0.0004 1.0276 32 1 -0.3633 0.8899 -0.5142 33 1 -0.3633 -0.8901 -0.5135 34 1 5.6945 0.9380 0.0021 35 1 4.7902 1.8040 -2.1380 36 1 3.8763 3.0462 -1.2492 37 1 5.6562 3.0788 -1.2479 38 1 4.7864 1.8054 2.1405 39 1 5.6535 3.0803 1.2506 40 1 3.8741 3.0471 1.2493 41 1 1.2978 -4.9414 -0.0355 42 1 2.7722 -5.2670 -0.9729 43 1 2.4436 -5.4661 2.0598 44 1 2.7503 -6.8019 0.9170 45 1 4.4854 -6.2186 3.2716 46 1 5.4672 -7.1765 2.1134 47 1 7.2244 -5.6245 2.1339 48 1 6.5350 -5.1441 3.7084 49 1 9.4659 -4.0484 3.3151 50 1 4.8364 -3.3884 -0.4228 51 1 4.2895 -2.0892 0.6758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042059706.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:11 Heat of formation + Delta-G solvation = 19.288375 kcal Electronic energy + Delta-G solvation = -32736.776157 eV Core-core repulsion = 28638.765784 eV Total energy + Delta-G solvation = -4098.010373 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.46495 -39.96360 -38.17523 -35.87976 -35.18875 -34.81247 -32.87902 -31.99213 -31.25681 -29.26124 -28.42318 -27.37715 -27.26314 -24.90359 -24.13084 -23.08371 -22.81886 -21.87369 -20.82030 -19.88822 -19.65675 -18.78260 -17.17666 -16.93396 -16.65373 -16.13302 -15.55147 -15.17568 -14.92876 -14.72019 -14.44163 -14.21918 -14.03319 -13.60259 -13.56871 -13.46425 -13.16902 -13.12670 -12.97320 -12.69407 -12.43572 -12.38064 -12.05033 -11.83692 -11.75747 -11.53515 -11.47205 -11.24046 -11.17151 -11.14902 -10.84467 -10.80330 -10.70408 -10.53648 -10.12669 -10.01145 -9.82250 -9.73058 -9.55582 -9.03681 -8.78123 -8.58803 -8.28204 -6.80202 -5.67495 -3.00306 1.12649 2.06726 2.45948 3.15319 3.40316 3.42214 3.44352 3.47476 3.80675 4.49157 4.54723 4.63826 4.77363 4.85724 5.06127 5.10418 5.14833 5.21955 5.26640 5.35500 5.39037 5.42588 5.48897 5.58822 5.63634 5.68355 5.73163 5.75825 5.80044 5.85205 5.87345 5.92283 6.00692 6.03796 6.04976 6.09165 6.15332 6.22840 6.25561 6.30280 6.53979 6.62869 6.72148 6.75344 7.06804 7.14465 7.48504 7.60363 7.65581 7.72186 7.85823 8.26896 8.32023 9.23720 9.86862 10.54982 11.45218 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008005 B = 0.005444 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3497.015192 B = 5141.882908 C = 8270.492764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.031 3.969 3 O -0.195 6.195 4 C 0.202 3.798 5 C -0.002 4.002 6 C -0.148 4.148 7 C -0.150 4.150 8 N -0.442 5.442 9 C -0.068 4.068 10 C 0.601 3.399 11 O -0.552 6.552 12 N -0.587 5.587 13 C 0.112 3.888 14 C -0.118 4.118 15 C -0.114 4.114 16 H 0.076 0.924 17 C -0.138 4.138 18 C 0.177 3.823 19 N -0.591 5.591 20 C -0.220 4.220 21 H 0.081 0.919 22 C -0.009 4.009 23 N -0.923 5.923 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.280 1.280 28 C 0.157 3.843 29 H 0.020 0.980 30 C 0.086 3.914 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.037 0.963 49 H 0.251 0.749 50 H 0.066 0.934 51 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.575 7.810 -6.917 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.026 4.026 3 O -0.082 6.082 4 C -0.006 4.006 5 C -0.021 4.021 6 C -0.206 4.206 7 C -0.208 4.208 8 N -0.171 5.171 9 C -0.188 4.188 10 C 0.389 3.611 11 O -0.432 6.432 12 N -0.318 5.318 13 C -0.010 4.010 14 C -0.156 4.156 15 C -0.134 4.134 16 H 0.094 0.906 17 C -0.176 4.176 18 C 0.053 3.947 19 N -0.316 5.316 20 C -0.348 4.348 21 H 0.098 0.902 22 C -0.205 4.205 23 N -0.571 5.571 24 Si 0.737 3.263 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.205 1.205 28 C 0.048 3.952 29 H 0.037 0.963 30 C -0.036 4.036 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.074 0.926 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.055 0.945 49 H 0.061 0.939 50 H 0.084 0.916 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -12.381 7.350 -6.925 15.977 hybrid contribution 0.341 0.989 0.071 1.049 sum -12.040 8.339 -6.853 16.170 Atomic orbital electron populations 1.20563 0.82762 1.05231 1.04461 1.23633 0.94952 0.83389 1.00582 1.84278 1.18012 1.36153 1.69796 1.26416 0.83810 0.90459 0.99894 1.19852 0.90192 0.94476 0.97558 1.21880 1.02943 0.99460 0.96272 1.21898 1.02860 0.99534 0.96540 1.70857 1.20762 1.08170 1.17287 1.21471 0.88880 0.95496 1.12950 1.16800 0.84983 0.82758 0.76593 1.90703 1.16479 1.83149 1.52858 1.48090 1.10284 1.05584 1.67799 1.21610 1.00912 0.80189 0.98304 1.21790 0.96454 0.98960 0.98423 1.22283 0.93699 0.98295 0.99088 0.90560 1.22715 0.99209 0.98799 0.96862 1.21536 0.92557 0.82825 0.97778 1.44158 1.07218 1.10094 1.70102 1.19054 0.92071 0.89753 1.33966 0.90157 1.24771 0.97233 0.97236 1.01238 1.69943 1.16162 1.24759 1.46208 0.86194 0.80295 0.82118 0.77682 1.21744 1.21809 1.20532 1.21080 0.88488 0.92282 0.93374 0.96285 1.22843 0.77891 1.04731 0.98171 0.89309 0.90397 0.86898 0.86151 0.91920 0.92028 0.90773 0.91472 0.90743 0.92066 0.89372 0.91901 0.91557 0.90940 0.92634 0.92308 0.92688 0.94490 0.93875 0.91558 0.84621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.78 9.95 36.01 0.36 -0.42 16 2 C 0.03 0.44 7.44 -35.08 -0.26 0.18 16 3 O -0.19 -2.69 10.73 6.49 0.07 -2.62 16 4 C 0.20 2.94 6.81 -13.08 -0.09 2.85 16 5 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 6 C -0.15 -1.34 9.18 37.16 0.34 -1.00 16 7 C -0.15 -1.54 9.18 37.16 0.34 -1.20 16 8 N -0.44 -7.62 7.76 -7.66 -0.06 -7.68 16 9 C -0.07 -1.15 6.65 -83.02 -0.55 -1.71 16 10 C 0.60 10.66 7.65 -12.52 -0.10 10.56 16 11 O -0.55 -9.93 14.12 5.27 0.07 -9.86 16 12 N -0.59 -10.33 3.00 -173.74 -0.52 -10.86 16 13 C 0.11 1.70 6.36 -3.53 -0.02 1.67 16 14 C -0.12 -1.76 5.72 -26.79 -0.15 -1.91 16 15 C -0.11 -2.07 2.61 -89.52 -0.23 -2.30 16 16 H 0.08 1.43 8.13 -51.93 -0.42 1.01 16 17 C -0.14 -2.61 6.54 -25.15 -0.16 -2.78 16 18 C 0.18 4.32 5.45 -1.91 -0.01 4.31 16 19 N -0.59 -14.97 3.35 -162.65 -0.54 -15.51 16 20 C -0.22 -5.99 9.88 -15.06 -0.15 -6.14 16 21 H 0.08 2.12 7.42 -52.49 -0.39 1.73 16 22 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 23 N -0.92 -26.90 10.43 55.49 0.58 -26.32 16 24 Si 0.91 21.66 29.55 -169.99 -5.02 16.64 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 C 0.16 3.34 2.77 -67.59 -0.19 3.16 16 29 H 0.02 0.45 7.93 -51.93 -0.41 0.04 16 30 C 0.09 1.69 5.30 -3.72 -0.02 1.67 16 31 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.63 8.14 -51.92 -0.42 0.20 16 33 H 0.11 1.30 6.37 -51.93 -0.33 0.97 16 34 H 0.12 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.09 1.30 6.92 -51.93 -0.36 0.94 16 42 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.07 1.03 7.98 -51.93 -0.41 0.62 16 44 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.05 1.00 8.12 -51.93 -0.42 0.58 16 46 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 47 H 0.05 1.47 7.21 -51.93 -0.37 1.10 16 48 H 0.04 0.99 7.76 -51.93 -0.40 0.59 16 49 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 50 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 51 H 0.14 2.82 3.93 -60.83 -0.24 2.58 16 LS Contribution 396.55 15.07 5.98 5.98 Total: -1.00 -31.73 396.55 -9.15 -40.88 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.40 Total: 3.07 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: -1.30 Total: 6.27 kcal Atomic # 7 Polarization: -59.81 SS G_CDS: -0.55 Total: -60.36 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.14 Total: -12.48 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.73 -9.15 -40.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042059706.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.171 kcal (2) G-P(sol) polarization free energy of solvation -31.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds