Wall clock time and date at job start Wed Apr 1 2020 05:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.34264 * 126.52468 * 2 1 4 4 C 1.34051 * 108.22435 * 179.97438 * 3 2 1 5 5 C 1.50696 * 125.37681 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47530 * 299.96711 * 5 4 3 7 7 C 1.53001 * 109.47113 * 59.96430 * 5 4 3 8 8 N 1.29935 * 109.24438 * 0.02562 * 4 3 2 9 9 C 1.36070 * 108.47835 * 359.97438 * 8 4 3 10 10 C 1.47421 * 126.44891 * 179.97438 * 9 8 4 11 11 O 1.21611 * 120.00111 * 186.55387 * 10 9 8 12 12 N 1.34778 * 119.99847 * 6.55758 * 10 9 8 13 13 C 1.46589 * 119.75448 * 187.21516 * 12 10 9 14 14 C 1.53885 * 110.71185 * 227.75458 * 13 12 10 15 15 C 1.51980 * 107.29082 * 308.18076 * 14 13 12 16 16 H 1.08997 * 111.01985 * 303.48256 * 15 14 13 17 17 C 1.53692 * 115.00609 * 175.44066 * 15 14 13 18 18 C 1.55303 * 101.81545 * 206.53613 * 17 15 14 19 19 N 1.48152 * 107.04312 * 22.44531 * 18 17 15 20 20 C 1.36931 * 126.40135 * 185.00387 * 19 18 17 21 21 H 1.07997 * 120.00598 * 179.97438 * 20 19 18 22 22 C 1.38816 * 119.99638 * 0.02562 * 20 19 18 23 23 N 1.31621 * 120.00267 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99925 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.47357 * 89.99409 * 24 22 20 26 26 H 1.48500 * 109.47405 * 209.99586 * 24 22 20 27 27 H 1.48507 * 109.46972 * 329.99617 * 24 22 20 28 28 C 1.45509 * 107.20055 * 5.00593 * 19 18 17 29 29 H 1.08994 * 109.56774 * 86.62438 * 28 19 18 30 30 C 1.47794 * 119.75421 * 6.94706 * 12 10 9 31 31 H 1.08996 * 109.47001 * 270.02194 * 1 2 3 32 32 H 1.09008 * 109.46976 * 30.02068 * 1 2 3 33 33 H 1.08996 * 109.47027 * 150.01971 * 1 2 3 34 34 H 1.08999 * 109.47557 * 179.97438 * 5 4 3 35 35 H 1.09000 * 109.46830 * 299.99930 * 6 5 4 36 36 H 1.08999 * 109.46910 * 59.99347 * 6 5 4 37 37 H 1.08993 * 109.47710 * 180.02562 * 6 5 4 38 38 H 1.09000 * 109.47328 * 59.99804 * 7 5 4 39 39 H 1.09000 * 109.47638 * 180.02562 * 7 5 4 40 40 H 1.09001 * 109.47216 * 299.99953 * 7 5 4 41 41 H 1.09005 * 109.23296 * 348.07415 * 13 12 10 42 42 H 1.09004 * 109.22801 * 107.47436 * 13 12 10 43 43 H 1.09000 * 109.89273 * 67.62925 * 14 13 12 44 44 H 1.09002 * 109.89149 * 188.66212 * 14 13 12 45 45 H 1.09000 * 110.96241 * 324.66784 * 17 15 14 46 46 H 1.09008 * 110.96041 * 88.40718 * 17 15 14 47 47 H 1.08995 * 109.91711 * 263.09483 * 18 17 15 48 48 H 1.08997 * 110.08541 * 141.89031 * 18 17 15 49 49 H 0.96996 * 119.99932 * 180.02562 * 23 22 20 50 50 H 1.08997 * 110.06562 * 247.95959 * 30 12 10 51 51 H 1.09005 * 110.06719 * 9.52516 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6580 0.0006 5 6 4.7930 1.5506 0.0013 6 6 4.7778 2.4335 -1.2482 7 6 4.7756 2.4343 1.2503 8 7 3.6002 -0.6411 0.0004 9 6 2.3170 -1.0936 0.0002 10 6 1.8853 -2.5032 -0.0005 11 8 0.7068 -2.7782 -0.1208 12 7 2.7968 -3.4872 0.1321 13 6 2.3864 -4.8853 -0.0276 14 6 2.9299 -5.7472 1.1256 15 6 4.4238 -5.4843 1.2208 16 1 4.9185 -5.6923 0.2721 17 6 5.1320 -6.1783 2.3951 18 6 6.3411 -5.2347 2.6396 19 7 5.9802 -3.9121 2.0781 20 6 6.7956 -2.8152 1.9937 21 1 6.4237 -1.8978 1.5622 22 6 8.1006 -2.8830 2.4620 23 7 8.5541 -4.0013 2.9875 24 14 9.2128 -1.3865 2.3476 25 1 9.0754 -0.5721 3.5818 26 1 10.6230 -1.8279 2.2003 27 1 8.8241 -0.5698 1.1698 28 6 4.5974 -3.9963 1.6330 29 1 3.9316 -3.7685 2.4653 30 6 4.2038 -3.1481 0.4316 31 1 -0.3633 0.0004 1.0276 32 1 -0.3633 0.8899 -0.5142 33 1 -0.3633 -0.8901 -0.5135 34 1 5.6945 0.9380 0.0021 35 1 4.7902 1.8040 -2.1380 36 1 3.8763 3.0462 -1.2492 37 1 5.6562 3.0788 -1.2479 38 1 4.7864 1.8054 2.1405 39 1 5.6535 3.0803 1.2506 40 1 3.8741 3.0471 1.2493 41 1 1.2978 -4.9414 -0.0355 42 1 2.7722 -5.2670 -0.9729 43 1 2.4436 -5.4661 2.0598 44 1 2.7503 -6.8019 0.9170 45 1 4.4854 -6.2186 3.2716 46 1 5.4672 -7.1765 2.1134 47 1 7.2244 -5.6245 2.1339 48 1 6.5350 -5.1441 3.7084 49 1 9.4659 -4.0484 3.3151 50 1 4.8364 -3.3884 -0.4228 51 1 4.2895 -2.0892 0.6758 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042059706.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:10 Heat of formation + Delta-G solvation = -0.050522 kcal Electronic energy + Delta-G solvation = -32737.614754 eV Core-core repulsion = 28638.765784 eV Total energy + Delta-G solvation = -4098.848971 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.60397 -41.39586 -39.72012 -36.91212 -36.63828 -36.02363 -34.63019 -33.01906 -32.93575 -30.89798 -30.15266 -28.38382 -28.13909 -26.57614 -25.70563 -24.53229 -23.97674 -23.05878 -22.10655 -21.67867 -21.13162 -20.07952 -18.58335 -18.47268 -18.06873 -17.29492 -16.90396 -16.75356 -16.33193 -16.11225 -15.82579 -15.69152 -15.38647 -15.08733 -14.76985 -14.67741 -14.53136 -14.34734 -13.95662 -13.77860 -13.74536 -13.62107 -13.36900 -13.10735 -13.07880 -13.06234 -12.71188 -12.61443 -12.52374 -12.49873 -12.21554 -12.11105 -12.04201 -12.00617 -11.90418 -11.63961 -11.52357 -11.35000 -11.27490 -10.69791 -10.47818 -9.98232 -9.63161 -8.87698 -7.80478 -5.15703 -0.02536 0.86549 1.37832 1.46481 1.48944 1.57619 1.84187 2.12565 2.53031 2.70637 3.31008 3.38178 3.52972 3.57177 3.84377 3.88637 3.93802 4.00840 4.02194 4.13698 4.22564 4.27778 4.29915 4.35239 4.40544 4.51214 4.56360 4.61762 4.69333 4.72884 4.75932 4.83472 4.84939 4.86145 4.87103 4.92556 5.04216 5.06313 5.07784 5.12256 5.15303 5.25333 5.27006 5.32933 5.48123 5.53530 5.64011 5.68859 5.78912 6.16113 6.22660 6.46394 6.96756 7.11897 7.80657 8.48837 9.31120 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008005 B = 0.005444 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3497.015192 B = 5141.882908 C = 8270.492764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.047 3.953 3 O -0.188 6.188 4 C 0.205 3.795 5 C -0.005 4.005 6 C -0.140 4.140 7 C -0.146 4.146 8 N -0.479 5.479 9 C -0.109 4.109 10 C 0.598 3.402 11 O -0.558 6.558 12 N -0.591 5.591 13 C 0.108 3.892 14 C -0.106 4.106 15 C -0.100 4.100 16 H 0.073 0.927 17 C -0.122 4.122 18 C 0.182 3.818 19 N -0.610 5.610 20 C -0.227 4.227 21 H 0.082 0.918 22 C -0.066 4.066 23 N -0.953 5.953 24 Si 0.969 3.031 25 H -0.288 1.288 26 H -0.297 1.297 27 H -0.260 1.260 28 C 0.150 3.850 29 H 0.002 0.998 30 C 0.102 3.898 31 H 0.103 0.897 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.045 0.955 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.110 0.890 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.023 0.977 48 H 0.001 0.999 49 H 0.245 0.755 50 H 0.053 0.947 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.372 8.996 -8.026 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.010 4.010 3 O -0.075 6.075 4 C -0.004 4.004 5 C -0.025 4.025 6 C -0.198 4.198 7 C -0.204 4.204 8 N -0.208 5.208 9 C -0.228 4.228 10 C 0.387 3.613 11 O -0.438 6.438 12 N -0.322 5.322 13 C -0.013 4.013 14 C -0.144 4.144 15 C -0.120 4.120 16 H 0.092 0.908 17 C -0.160 4.160 18 C 0.057 3.943 19 N -0.334 5.334 20 C -0.356 4.356 21 H 0.100 0.900 22 C -0.259 4.259 23 N -0.603 5.603 24 Si 0.797 3.203 25 H -0.215 1.215 26 H -0.224 1.224 27 H -0.184 1.184 28 C 0.042 3.958 29 H 0.019 0.981 30 C -0.022 4.022 31 H 0.122 0.878 32 H 0.127 0.873 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.064 0.936 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.128 0.872 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.041 0.959 48 H 0.019 0.981 49 H 0.054 0.946 50 H 0.071 0.929 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.227 8.531 -8.055 18.441 hybrid contribution 0.847 0.671 0.432 1.164 sum -13.381 9.202 -7.622 17.939 Atomic orbital electron populations 1.20726 0.80060 1.06313 1.05640 1.24273 0.96259 0.82671 0.97845 1.84306 1.17748 1.35817 1.69641 1.26984 0.84694 0.90182 0.98530 1.20052 0.88273 0.94478 0.99651 1.21858 1.04498 0.99108 0.94339 1.21893 1.04563 0.99231 0.94712 1.70745 1.21481 1.09655 1.18873 1.21560 0.89493 0.95861 1.15844 1.16959 0.84919 0.83221 0.76234 1.90684 1.16405 1.83452 1.53289 1.48104 1.09243 1.06804 1.68052 1.21809 1.01532 0.78881 0.99076 1.21744 0.93253 1.01141 0.98253 1.22205 0.96164 0.95278 0.98344 0.90819 1.22592 0.96945 0.98647 0.97818 1.21340 0.94085 0.83816 0.95040 1.44424 1.08658 1.10000 1.70363 1.19360 0.92545 0.90560 1.33121 0.90030 1.25595 0.98717 1.00074 1.01500 1.70169 1.15975 1.26708 1.47429 0.85203 0.77762 0.79057 0.78257 1.21490 1.22361 1.18439 1.21177 0.86009 0.95302 0.93299 0.98094 1.22473 0.79066 1.03982 0.96645 0.87844 0.87276 0.87748 0.87730 0.92674 0.91022 0.88612 0.93620 0.88590 0.90808 0.88432 0.90429 0.91988 0.87207 0.91394 0.89696 0.95864 0.98117 0.94619 0.92899 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.34 9.95 71.24 0.71 -0.63 16 2 C 0.05 1.27 7.44 25.19 0.19 1.46 16 3 O -0.19 -4.93 10.73 0.30 0.00 -4.93 16 4 C 0.20 5.89 6.81 88.39 0.60 6.50 16 5 C -0.01 -0.12 3.39 -11.54 -0.04 -0.16 16 6 C -0.14 -2.28 9.18 71.98 0.66 -1.62 16 7 C -0.15 -2.79 9.18 71.98 0.66 -2.13 16 8 N -0.48 -16.79 7.76 -293.04 -2.27 -19.06 16 9 C -0.11 -3.68 6.65 40.41 0.27 -3.41 16 10 C 0.60 21.02 7.65 86.66 0.66 21.68 16 11 O -0.56 -19.48 14.12 -4.07 -0.06 -19.54 16 12 N -0.59 -20.61 3.00 -821.83 -2.47 -23.08 16 13 C 0.11 3.07 6.36 86.66 0.55 3.62 16 14 C -0.11 -2.88 5.72 30.56 0.17 -2.71 16 15 C -0.10 -3.54 2.61 -10.08 -0.03 -3.57 16 16 H 0.07 2.67 8.13 -2.39 -0.02 2.65 16 17 C -0.12 -4.54 6.54 31.62 0.21 -4.33 16 18 C 0.18 9.20 5.45 86.85 0.47 9.67 16 19 N -0.61 -32.01 3.35 -668.49 -2.24 -34.24 16 20 C -0.23 -12.78 9.88 84.04 0.83 -11.95 16 21 H 0.08 4.45 7.42 -2.91 -0.02 4.43 16 22 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 23 N -0.95 -57.90 10.43 21.65 0.23 -57.68 16 24 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 26 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 27 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 28 C 0.15 6.52 2.77 45.75 0.13 6.65 16 29 H 0.00 0.08 7.93 -2.39 -0.02 0.06 16 30 C 0.10 4.08 5.30 85.88 0.46 4.54 16 31 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.11 1.38 8.14 -2.38 -0.02 1.36 16 33 H 0.10 2.22 6.37 -2.39 -0.02 2.21 16 34 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 35 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.10 2.63 6.92 -2.38 -0.02 2.62 16 42 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 43 H 0.06 1.78 7.98 -2.39 -0.02 1.76 16 44 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.07 2.37 8.12 -2.39 -0.02 2.35 16 46 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 47 H 0.02 1.30 7.21 -2.39 -0.02 1.28 16 48 H 0.00 0.03 7.76 -2.39 -0.02 0.01 16 49 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 50 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 51 H 0.13 5.44 3.93 -19.97 -0.08 5.36 16 Total: -1.00 -72.31 396.55 3.04 -69.27 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: 0.85 Total: 21.52 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 6.97 Total: 20.27 kcal Atomic # 7 Polarization: -127.31 SS G_CDS: -6.75 Total: -134.06 kcal Atomic # 8 Polarization: -24.42 SS G_CDS: -0.05 Total: -24.47 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -72.31 3.04 -69.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042059706.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.218 kcal (2) G-P(sol) polarization free energy of solvation -72.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds