Wall clock time and date at job start Wed Apr 1 2020 05:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34261 * 126.52430 * 2 1 4 4 C 1.34046 * 108.22637 * 180.26357 * 3 2 1 5 5 C 1.50699 * 125.37769 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47433 * 299.97735 * 5 4 3 7 7 C 1.52997 * 109.47013 * 59.97934 * 5 4 3 8 8 N 1.29941 * 109.24731 * 359.97438 * 4 3 2 9 9 C 1.36069 * 108.47397 * 0.02562 * 8 4 3 10 10 C 1.47415 * 126.45048 * 180.02562 * 9 8 4 11 11 O 1.21614 * 120.00567 * 186.16066 * 10 9 8 12 12 N 1.34782 * 119.99897 * 6.15089 * 10 9 8 13 13 C 1.47158 * 121.21748 * 6.91840 * 12 10 9 14 14 C 1.52839 * 107.97844 * 122.70050 * 13 12 10 15 15 C 1.53089 * 110.58457 * 57.33788 * 14 13 12 16 16 H 1.09000 * 112.49317 * 71.39313 * 15 14 13 17 17 C 1.56029 * 106.38536 * 195.44805 * 15 14 13 18 18 C 1.54495 * 102.61293 * 78.38961 * 17 15 14 19 19 N 1.47433 * 107.15239 * 22.84723 * 18 17 15 20 20 C 1.36935 * 126.06152 * 181.58164 * 19 18 17 21 21 H 1.07999 * 120.00204 * 180.02562 * 20 19 18 22 22 C 1.38808 * 119.99986 * 0.02562 * 20 19 18 23 23 N 1.31620 * 120.00258 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00077 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46869 * 90.00206 * 24 22 20 26 26 H 1.48492 * 109.47316 * 210.00065 * 24 22 20 27 27 H 1.48500 * 109.46922 * 330.00511 * 24 22 20 28 28 C 1.46474 * 107.87906 * 1.61539 * 19 18 17 29 29 H 1.08995 * 108.42244 * 89.91123 * 28 19 18 30 30 C 1.46759 * 121.22154 * 186.63007 * 12 10 9 31 31 H 1.09001 * 109.46778 * 269.68687 * 1 2 3 32 32 H 1.08994 * 109.47363 * 29.68539 * 1 2 3 33 33 H 1.09000 * 109.47037 * 149.69273 * 1 2 3 34 34 H 1.09003 * 109.47108 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.47035 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.46908 * 299.99721 * 6 5 4 37 37 H 1.08994 * 109.46865 * 59.99758 * 6 5 4 38 38 H 1.09003 * 109.47746 * 59.99680 * 7 5 4 39 39 H 1.08997 * 109.47354 * 179.97438 * 7 5 4 40 40 H 1.09003 * 109.46967 * 299.99821 * 7 5 4 41 41 H 1.09002 * 109.75577 * 242.31479 * 13 12 10 42 42 H 1.08994 * 109.76345 * 3.07252 * 13 12 10 43 43 H 1.09002 * 109.25113 * 177.62514 * 14 13 12 44 44 H 1.08996 * 109.24958 * 297.08784 * 14 13 12 45 45 H 1.09008 * 110.77844 * 196.66461 * 17 15 14 46 46 H 1.08995 * 110.78398 * 319.91186 * 17 15 14 47 47 H 1.09002 * 109.90672 * 142.23206 * 18 17 15 48 48 H 1.09006 * 109.89949 * 263.28870 * 18 17 15 49 49 H 0.96998 * 120.00334 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.22579 * 352.86752 * 30 12 10 51 51 H 1.09002 * 109.22445 * 112.22743 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5787 0.6581 -0.0059 5 6 4.7929 1.5508 -0.0074 6 6 4.7725 2.4375 -1.2540 7 6 4.7807 2.4303 1.2444 8 7 3.6003 -0.6411 -0.0089 9 6 2.3170 -1.0936 -0.0056 10 6 1.8853 -2.5032 -0.0069 11 8 0.7057 -2.7779 -0.1166 12 7 2.7981 -3.4876 0.1133 13 6 4.2104 -3.1876 0.3977 14 6 4.6003 -3.9240 1.6790 15 6 4.3561 -5.4280 1.5310 16 1 5.0700 -5.9021 0.8574 17 6 4.3949 -6.0242 2.9724 18 6 3.0020 -5.6533 3.5285 19 7 2.1137 -5.4427 2.3708 20 6 0.7974 -5.0689 2.4224 21 1 0.2357 -4.9425 1.5086 22 6 0.1849 -4.8522 3.6490 23 7 0.8695 -5.0056 4.7627 24 14 -1.6106 -4.3414 3.7193 25 1 -2.4674 -5.5525 3.7855 26 1 -1.8407 -3.5058 4.9251 27 1 -1.9509 -3.5601 2.5032 28 6 2.8885 -5.7052 1.1558 29 1 2.7904 -6.7616 0.9062 30 6 2.4187 -4.8982 -0.0284 31 1 -0.3633 -0.0056 1.0277 32 1 -0.3634 0.8927 -0.5089 33 1 -0.3633 -0.8872 -0.5186 34 1 5.6944 0.9380 -0.0120 35 1 5.6504 3.0835 -1.2547 36 1 4.7812 1.8108 -2.1458 37 1 3.8710 3.0502 -1.2492 38 1 4.7952 1.7986 2.1327 39 1 5.6591 3.0757 1.2437 40 1 3.8792 3.0431 1.2492 41 1 4.8335 -3.5304 -0.4284 42 1 4.3386 -2.1141 0.5360 43 1 5.6562 -3.7499 1.8865 44 1 4.0037 -3.5433 2.5080 45 1 4.5228 -7.1062 2.9400 46 1 5.1859 -5.5603 3.5616 47 1 2.6204 -6.4664 4.1460 48 1 3.0695 -4.7395 4.1189 49 1 0.4415 -4.8546 5.6199 50 1 1.3338 -4.9723 -0.1039 51 1 2.8694 -5.3017 -0.9352 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042059707.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:14 Heat of formation + Delta-G solvation = 20.673434 kcal Electronic energy + Delta-G solvation = -33101.907369 eV Core-core repulsion = 29003.957057 eV Total energy + Delta-G solvation = -4097.950313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.42575 -39.73922 -37.93669 -36.00811 -35.08747 -34.47165 -32.75118 -31.85822 -31.03594 -29.26366 -28.25568 -27.54622 -27.12904 -24.70385 -24.29994 -23.17319 -22.46966 -22.23560 -21.06771 -19.87970 -19.26568 -18.23741 -17.07322 -16.89530 -16.44074 -16.19988 -15.37666 -15.15837 -14.78636 -14.54256 -14.50716 -14.13343 -13.82890 -13.62315 -13.61990 -13.23784 -13.01339 -12.88034 -12.83410 -12.56715 -12.53129 -12.38623 -11.89189 -11.88561 -11.65277 -11.55137 -11.36862 -11.36340 -11.23930 -11.08310 -10.76555 -10.73029 -10.68727 -10.24366 -10.00456 -9.74985 -9.71063 -9.57419 -9.40465 -9.12190 -8.68820 -8.45194 -7.95470 -6.68105 -5.56095 -2.87486 1.25140 2.12194 2.48456 3.39778 3.50689 3.55702 3.62604 3.71325 3.85338 4.48594 4.64675 4.68580 4.72192 4.82452 4.98779 5.23358 5.25637 5.26189 5.33749 5.39109 5.44438 5.49066 5.55231 5.58228 5.60714 5.65535 5.73617 5.82544 5.85721 5.87146 5.90611 5.93472 5.95504 6.08698 6.12616 6.17549 6.26115 6.37143 6.39278 6.53659 6.63876 6.68992 6.73796 6.84671 7.09747 7.26134 7.54990 7.70657 7.72996 7.98943 8.02534 8.38384 8.70640 9.37542 9.98465 10.63379 11.56504 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010887 B = 0.004368 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.168155 B = 6409.144031 C = 7609.509762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.035 3.965 3 O -0.196 6.196 4 C 0.190 3.810 5 C 0.004 3.996 6 C -0.149 4.149 7 C -0.151 4.151 8 N -0.451 5.451 9 C -0.059 4.059 10 C 0.604 3.396 11 O -0.529 6.529 12 N -0.575 5.575 13 C 0.082 3.918 14 C -0.120 4.120 15 C -0.102 4.102 16 H 0.074 0.926 17 C -0.144 4.144 18 C 0.180 3.820 19 N -0.588 5.588 20 C -0.208 4.208 21 H 0.083 0.917 22 C -0.010 4.010 23 N -0.928 5.928 24 Si 0.902 3.098 25 H -0.291 1.291 26 H -0.294 1.294 27 H -0.277 1.277 28 C 0.155 3.845 29 H 0.026 0.974 30 C 0.113 3.887 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.132 0.868 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.053 0.947 46 H 0.057 0.943 47 H 0.040 0.960 48 H 0.043 0.957 49 H 0.248 0.752 50 H 0.095 0.905 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.839 13.201 -11.088 20.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.021 4.021 3 O -0.083 6.083 4 C -0.018 4.018 5 C -0.015 4.015 6 C -0.207 4.207 7 C -0.209 4.209 8 N -0.181 5.181 9 C -0.179 4.179 10 C 0.390 3.610 11 O -0.406 6.406 12 N -0.306 5.306 13 C -0.041 4.041 14 C -0.158 4.158 15 C -0.122 4.122 16 H 0.092 0.908 17 C -0.182 4.182 18 C 0.055 3.945 19 N -0.314 5.314 20 C -0.336 4.336 21 H 0.101 0.899 22 C -0.205 4.205 23 N -0.576 5.576 24 Si 0.733 3.267 25 H -0.219 1.219 26 H -0.221 1.221 27 H -0.202 1.202 28 C 0.047 3.953 29 H 0.043 0.957 30 C -0.010 4.010 31 H 0.110 0.890 32 H 0.095 0.905 33 H 0.134 0.866 34 H 0.132 0.868 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.149 0.851 43 H 0.076 0.924 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.076 0.924 47 H 0.058 0.942 48 H 0.062 0.938 49 H 0.058 0.942 50 H 0.113 0.887 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.551 12.748 -10.982 19.861 hybrid contribution -1.356 0.487 0.383 1.491 sum 9.194 13.235 -10.599 19.288 Atomic orbital electron populations 1.20610 0.82580 1.05149 1.04923 1.23705 0.95049 0.83146 1.00173 1.84258 1.17810 1.36296 1.69914 1.26265 0.84119 0.90469 1.00928 1.19745 0.89943 0.94266 0.97541 1.21890 1.03051 0.99472 0.96298 1.21906 1.03029 0.99607 0.96374 1.70534 1.21506 1.08105 1.17952 1.21622 0.88334 0.95954 1.12004 1.16563 0.85151 0.82115 0.77130 1.90765 1.16067 1.82552 1.51191 1.47516 1.08692 1.05801 1.68566 1.22526 0.80493 1.04647 0.96402 1.21813 1.00195 0.95103 0.98701 1.22387 0.96970 0.95593 0.97241 0.90786 1.23166 1.00143 0.99183 0.95750 1.21184 0.84552 0.99634 0.89131 1.44304 1.07585 1.80291 0.99190 1.19078 0.84328 1.37355 0.92863 0.89908 1.24691 0.97959 1.02462 0.95418 1.69966 1.34748 1.56434 0.96492 0.86223 0.85334 0.78162 0.76998 1.21880 1.22076 1.20200 1.20589 0.90307 0.95804 0.88640 0.95663 1.21363 1.02830 0.79692 0.97144 0.88987 0.90529 0.86641 0.86794 0.90893 0.91911 0.91870 0.91689 0.90875 0.91844 0.92751 0.85127 0.92361 0.90590 0.92869 0.92411 0.94202 0.93841 0.94194 0.88664 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 9.94 36.00 0.36 -0.69 16 2 C 0.04 0.56 7.44 -35.08 -0.26 0.30 16 3 O -0.20 -2.75 10.73 6.51 0.07 -2.68 16 4 C 0.19 2.50 6.81 -13.08 -0.09 2.41 16 5 C 0.00 0.04 3.39 -91.78 -0.31 -0.27 16 6 C -0.15 -1.02 9.18 37.16 0.34 -0.68 16 7 C -0.15 -1.15 9.17 37.16 0.34 -0.81 16 8 N -0.45 -7.10 7.82 -7.65 -0.06 -7.16 16 9 C -0.06 -1.07 6.71 -83.02 -0.56 -1.63 16 10 C 0.60 12.53 7.69 -12.52 -0.10 12.44 16 11 O -0.53 -12.18 14.25 5.27 0.08 -12.11 16 12 N -0.58 -11.26 2.98 -175.62 -0.52 -11.78 16 13 C 0.08 1.38 6.20 -3.77 -0.02 1.36 16 14 C -0.12 -2.10 5.04 -26.77 -0.13 -2.24 16 15 C -0.10 -1.82 3.68 -88.43 -0.33 -2.15 16 16 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 17 C -0.14 -2.75 6.32 -24.33 -0.15 -2.91 16 18 C 0.18 4.45 4.61 -2.75 -0.01 4.44 16 19 N -0.59 -15.11 3.19 -164.68 -0.53 -15.64 16 20 C -0.21 -5.95 9.69 -15.06 -0.15 -6.10 16 21 H 0.08 2.41 6.49 -52.49 -0.34 2.07 16 22 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 23 N -0.93 -28.20 10.38 55.49 0.58 -27.63 16 24 Si 0.90 23.58 29.55 -169.99 -5.02 18.56 16 25 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 26 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 27 H -0.28 -7.22 7.11 56.52 0.40 -6.81 16 28 C 0.16 3.25 2.97 -68.52 -0.20 3.05 16 29 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 30 C 0.11 2.24 5.66 -5.00 -0.03 2.21 16 31 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.12 1.77 6.39 -51.93 -0.33 1.44 16 34 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.13 2.20 4.04 -61.91 -0.25 1.95 16 43 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.08 1.64 6.85 -51.93 -0.36 1.29 16 45 H 0.05 0.96 8.14 -51.92 -0.42 0.53 16 46 H 0.06 1.01 7.98 -51.93 -0.41 0.59 16 47 H 0.04 1.10 7.57 -51.93 -0.39 0.71 16 48 H 0.04 1.20 7.05 -51.93 -0.37 0.84 16 49 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 50 H 0.10 2.14 5.49 -51.93 -0.29 1.85 16 51 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 392.50 15.07 5.91 5.91 Total: -1.00 -34.03 392.50 -9.11 -43.14 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -8.21 Total: 1.06 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: -1.40 Total: 8.33 kcal Atomic # 7 Polarization: -61.68 SS G_CDS: -0.53 Total: -62.21 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.14 Total: -14.79 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.02 Total: 18.56 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.03 -9.11 -43.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042059707.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.812 kcal (2) G-P(sol) polarization free energy of solvation -34.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds