Wall clock time and date at job start Wed Apr 1 2020 05:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.34261 * 126.52430 * 2 1 4 4 C 1.34046 * 108.22637 * 180.26357 * 3 2 1 5 5 C 1.50699 * 125.37769 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47433 * 299.97735 * 5 4 3 7 7 C 1.52997 * 109.47013 * 59.97934 * 5 4 3 8 8 N 1.29941 * 109.24731 * 359.97438 * 4 3 2 9 9 C 1.36069 * 108.47397 * 0.02562 * 8 4 3 10 10 C 1.47415 * 126.45048 * 180.02562 * 9 8 4 11 11 O 1.21614 * 120.00567 * 186.16066 * 10 9 8 12 12 N 1.34782 * 119.99897 * 6.15089 * 10 9 8 13 13 C 1.47158 * 121.21748 * 6.91840 * 12 10 9 14 14 C 1.52839 * 107.97844 * 122.70050 * 13 12 10 15 15 C 1.53089 * 110.58457 * 57.33788 * 14 13 12 16 16 H 1.09000 * 112.49317 * 71.39313 * 15 14 13 17 17 C 1.56029 * 106.38536 * 195.44805 * 15 14 13 18 18 C 1.54495 * 102.61293 * 78.38961 * 17 15 14 19 19 N 1.47433 * 107.15239 * 22.84723 * 18 17 15 20 20 C 1.36935 * 126.06152 * 181.58164 * 19 18 17 21 21 H 1.07999 * 120.00204 * 180.02562 * 20 19 18 22 22 C 1.38808 * 119.99986 * 0.02562 * 20 19 18 23 23 N 1.31620 * 120.00258 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00077 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46869 * 90.00206 * 24 22 20 26 26 H 1.48492 * 109.47316 * 210.00065 * 24 22 20 27 27 H 1.48500 * 109.46922 * 330.00511 * 24 22 20 28 28 C 1.46474 * 107.87906 * 1.61539 * 19 18 17 29 29 H 1.08995 * 108.42244 * 89.91123 * 28 19 18 30 30 C 1.46759 * 121.22154 * 186.63007 * 12 10 9 31 31 H 1.09001 * 109.46778 * 269.68687 * 1 2 3 32 32 H 1.08994 * 109.47363 * 29.68539 * 1 2 3 33 33 H 1.09000 * 109.47037 * 149.69273 * 1 2 3 34 34 H 1.09003 * 109.47108 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.47035 * 179.97438 * 6 5 4 36 36 H 1.09005 * 109.46908 * 299.99721 * 6 5 4 37 37 H 1.08994 * 109.46865 * 59.99758 * 6 5 4 38 38 H 1.09003 * 109.47746 * 59.99680 * 7 5 4 39 39 H 1.08997 * 109.47354 * 179.97438 * 7 5 4 40 40 H 1.09003 * 109.46967 * 299.99821 * 7 5 4 41 41 H 1.09002 * 109.75577 * 242.31479 * 13 12 10 42 42 H 1.08994 * 109.76345 * 3.07252 * 13 12 10 43 43 H 1.09002 * 109.25113 * 177.62514 * 14 13 12 44 44 H 1.08996 * 109.24958 * 297.08784 * 14 13 12 45 45 H 1.09008 * 110.77844 * 196.66461 * 17 15 14 46 46 H 1.08995 * 110.78398 * 319.91186 * 17 15 14 47 47 H 1.09002 * 109.90672 * 142.23206 * 18 17 15 48 48 H 1.09006 * 109.89949 * 263.28870 * 18 17 15 49 49 H 0.96998 * 120.00334 * 180.02562 * 23 22 20 50 50 H 1.09002 * 109.22579 * 352.86752 * 30 12 10 51 51 H 1.09002 * 109.22445 * 112.22743 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5787 0.6581 -0.0059 5 6 4.7929 1.5508 -0.0074 6 6 4.7725 2.4375 -1.2540 7 6 4.7807 2.4303 1.2444 8 7 3.6003 -0.6411 -0.0089 9 6 2.3170 -1.0936 -0.0056 10 6 1.8853 -2.5032 -0.0069 11 8 0.7057 -2.7779 -0.1166 12 7 2.7981 -3.4876 0.1133 13 6 4.2104 -3.1876 0.3977 14 6 4.6003 -3.9240 1.6790 15 6 4.3561 -5.4280 1.5310 16 1 5.0700 -5.9021 0.8574 17 6 4.3949 -6.0242 2.9724 18 6 3.0020 -5.6533 3.5285 19 7 2.1137 -5.4427 2.3708 20 6 0.7974 -5.0689 2.4224 21 1 0.2357 -4.9425 1.5086 22 6 0.1849 -4.8522 3.6490 23 7 0.8695 -5.0056 4.7627 24 14 -1.6106 -4.3414 3.7193 25 1 -2.4674 -5.5525 3.7855 26 1 -1.8407 -3.5058 4.9251 27 1 -1.9509 -3.5601 2.5032 28 6 2.8885 -5.7052 1.1558 29 1 2.7904 -6.7616 0.9062 30 6 2.4187 -4.8982 -0.0284 31 1 -0.3633 -0.0056 1.0277 32 1 -0.3634 0.8927 -0.5089 33 1 -0.3633 -0.8872 -0.5186 34 1 5.6944 0.9380 -0.0120 35 1 5.6504 3.0835 -1.2547 36 1 4.7812 1.8108 -2.1458 37 1 3.8710 3.0502 -1.2492 38 1 4.7952 1.7986 2.1327 39 1 5.6591 3.0757 1.2437 40 1 3.8792 3.0431 1.2492 41 1 4.8335 -3.5304 -0.4284 42 1 4.3386 -2.1141 0.5360 43 1 5.6562 -3.7499 1.8865 44 1 4.0037 -3.5433 2.5080 45 1 4.5228 -7.1062 2.9400 46 1 5.1859 -5.5603 3.5616 47 1 2.6204 -6.4664 4.1460 48 1 3.0695 -4.7395 4.1189 49 1 0.4415 -4.8546 5.6199 50 1 1.3338 -4.9723 -0.1039 51 1 2.8694 -5.3017 -0.9352 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042059707.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:13 Heat of formation + Delta-G solvation = -1.673474 kcal Electronic energy + Delta-G solvation = -33102.876404 eV Core-core repulsion = 29003.957057 eV Total energy + Delta-G solvation = -4098.919347 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.58822 -41.30947 -39.57474 -36.87213 -36.53228 -35.79492 -34.65920 -33.01516 -32.80040 -30.94485 -30.06069 -28.35021 -28.09070 -26.50740 -25.95259 -24.40711 -23.93446 -23.42775 -22.23974 -21.75063 -20.62469 -19.72374 -18.56637 -18.36417 -18.04383 -17.26649 -17.01240 -16.59616 -16.27905 -16.05150 -15.91669 -15.57499 -15.38851 -15.09041 -14.58775 -14.55499 -14.36423 -14.28997 -14.18297 -13.83663 -13.75024 -13.54960 -13.21007 -13.11619 -13.03984 -12.96352 -12.68433 -12.66263 -12.56201 -12.42066 -12.35988 -12.12679 -12.06527 -11.97275 -11.75727 -11.66281 -11.38173 -11.26355 -11.16499 -10.67127 -10.53557 -9.93613 -9.45333 -8.80342 -7.82166 -5.12635 0.00422 0.92910 1.36448 1.37535 1.37977 1.49580 1.98133 2.30825 2.49242 2.72668 3.36363 3.44962 3.55086 3.64242 3.88164 3.91259 3.99404 4.06677 4.09853 4.13442 4.22470 4.31584 4.37387 4.46469 4.48364 4.51126 4.61091 4.67387 4.72073 4.75198 4.77266 4.82135 4.87643 4.88087 4.92004 4.98913 5.03790 5.08350 5.13371 5.15200 5.27461 5.31147 5.32496 5.40306 5.54753 5.63356 5.70819 5.79369 5.82290 6.23689 6.33285 6.56443 7.15436 7.17493 7.83880 8.47570 9.28872 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010887 B = 0.004368 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.168155 B = 6409.144031 C = 7609.509762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.034 3.966 3 O -0.191 6.191 4 C 0.204 3.796 5 C 0.004 3.996 6 C -0.144 4.144 7 C -0.149 4.149 8 N -0.467 5.467 9 C -0.091 4.091 10 C 0.591 3.409 11 O -0.568 6.568 12 N -0.580 5.580 13 C 0.082 3.918 14 C -0.113 4.113 15 C -0.086 4.086 16 H 0.123 0.877 17 C -0.129 4.129 18 C 0.188 3.812 19 N -0.606 5.606 20 C -0.201 4.201 21 H 0.071 0.929 22 C -0.068 4.068 23 N -0.953 5.953 24 Si 0.955 3.045 25 H -0.285 1.285 26 H -0.294 1.294 27 H -0.279 1.279 28 C 0.143 3.857 29 H 0.032 0.968 30 C 0.115 3.885 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.103 0.897 40 H 0.058 0.942 41 H 0.087 0.913 42 H 0.133 0.867 43 H 0.096 0.904 44 H 0.025 0.975 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.000 1.000 48 H 0.002 0.998 49 H 0.241 0.759 50 H 0.059 0.941 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.921 14.590 -12.979 23.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.023 4.023 3 O -0.078 6.078 4 C -0.005 4.005 5 C -0.015 4.015 6 C -0.202 4.202 7 C -0.206 4.206 8 N -0.196 5.196 9 C -0.209 4.209 10 C 0.379 3.621 11 O -0.448 6.448 12 N -0.310 5.310 13 C -0.040 4.040 14 C -0.152 4.152 15 C -0.105 4.105 16 H 0.141 0.859 17 C -0.167 4.167 18 C 0.063 3.937 19 N -0.331 5.331 20 C -0.330 4.330 21 H 0.089 0.911 22 C -0.260 4.260 23 N -0.604 5.604 24 Si 0.786 3.214 25 H -0.212 1.212 26 H -0.221 1.221 27 H -0.205 1.205 28 C 0.036 3.964 29 H 0.049 0.951 30 C -0.008 4.008 31 H 0.105 0.895 32 H 0.131 0.869 33 H 0.114 0.886 34 H 0.146 0.854 35 H 0.120 0.880 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.121 0.879 40 H 0.077 0.923 41 H 0.105 0.895 42 H 0.150 0.850 43 H 0.114 0.886 44 H 0.044 0.956 45 H 0.089 0.911 46 H 0.097 0.903 47 H 0.018 0.982 48 H 0.021 0.979 49 H 0.050 0.950 50 H 0.077 0.923 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.678 14.114 -12.904 23.512 hybrid contribution -2.255 0.102 0.919 2.437 sum 11.422 14.216 -11.985 21.822 Atomic orbital electron populations 1.20611 0.81626 1.06019 1.04787 1.23966 0.95868 0.83174 0.99245 1.84293 1.18175 1.35471 1.69876 1.27378 0.84776 0.90421 0.97890 1.20129 0.88109 0.94254 0.99056 1.21889 1.04273 0.99251 0.94811 1.21917 1.04312 0.99427 0.94991 1.70443 1.20290 1.09334 1.19523 1.21416 0.89980 0.95079 1.14459 1.17038 0.84940 0.83499 0.76648 1.90728 1.17585 1.83440 1.53047 1.47710 1.09798 1.05427 1.68016 1.22716 0.79151 1.05005 0.97084 1.21758 1.01476 0.94730 0.97197 1.22444 0.95301 0.95973 0.96807 0.85944 1.23030 0.96496 1.00578 0.96643 1.20928 0.87843 0.96268 0.88666 1.44509 1.07210 1.79842 1.01525 1.19166 0.85990 1.35669 0.92210 0.91083 1.25358 1.01352 1.03847 0.95443 1.70168 1.35696 1.58084 0.96454 0.85378 0.81744 0.77816 0.76508 1.21191 1.22074 1.20480 1.20907 0.92070 0.96149 0.87260 0.95052 1.21291 1.01022 0.80267 0.98210 0.89474 0.86852 0.88566 0.85351 0.88041 0.92420 0.92242 0.93230 0.87857 0.92265 0.89465 0.85018 0.88604 0.95635 0.91082 0.90255 0.98192 0.97930 0.94995 0.92260 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.08 9.94 71.24 0.71 -1.38 16 2 C 0.03 1.09 7.44 25.19 0.19 1.28 16 3 O -0.19 -5.18 10.73 0.38 0.00 -5.17 16 4 C 0.20 5.05 6.81 88.39 0.60 5.65 16 5 C 0.00 0.05 3.39 -11.54 -0.04 0.01 16 6 C -0.14 -1.49 9.18 71.98 0.66 -0.83 16 7 C -0.15 -1.86 9.17 71.98 0.66 -1.20 16 8 N -0.47 -14.27 7.82 -293.03 -2.29 -16.56 16 9 C -0.09 -3.32 6.71 40.41 0.27 -3.05 16 10 C 0.59 25.27 7.69 86.66 0.67 25.94 16 11 O -0.57 -27.62 14.25 -4.07 -0.06 -27.68 16 12 N -0.58 -22.55 2.98 -827.80 -2.46 -25.01 16 13 C 0.08 2.57 6.20 86.20 0.53 3.11 16 14 C -0.11 -3.70 5.04 30.57 0.15 -3.55 16 15 C -0.09 -2.78 3.68 -9.38 -0.03 -2.82 16 16 H 0.12 2.95 8.14 -2.39 -0.02 2.94 16 17 C -0.13 -4.69 6.32 32.15 0.20 -4.49 16 18 C 0.19 9.63 4.61 86.71 0.40 10.03 16 19 N -0.61 -32.05 3.19 -674.92 -2.16 -34.20 16 20 C -0.20 -12.02 9.69 84.03 0.81 -11.20 16 21 H 0.07 4.37 6.49 -2.91 -0.02 4.35 16 22 C -0.07 -4.19 5.49 84.86 0.47 -3.73 16 23 N -0.95 -60.94 10.38 21.65 0.22 -60.72 16 24 Si 0.96 50.72 29.55 68.60 2.03 52.75 16 25 H -0.28 -14.67 7.11 99.48 0.71 -13.97 16 26 H -0.29 -15.47 7.11 99.48 0.71 -14.76 16 27 H -0.28 -14.77 7.11 99.48 0.71 -14.07 16 28 C 0.14 5.87 2.97 44.62 0.13 6.00 16 29 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 30 C 0.12 4.52 5.66 85.62 0.48 5.00 16 31 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.10 3.12 6.39 -2.39 -0.02 3.10 16 34 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 0.67 8.14 -2.38 -0.02 0.66 16 37 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 40 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.13 4.21 4.04 -22.10 -0.09 4.13 16 43 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.02 1.09 6.85 -2.39 -0.02 1.07 16 45 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 46 H 0.08 2.56 7.98 -2.39 -0.02 2.54 16 47 H 0.00 -0.01 7.57 -2.39 -0.02 -0.03 16 48 H 0.00 0.14 7.05 -2.38 -0.02 0.13 16 49 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 50 H 0.06 2.76 5.49 -2.39 -0.01 2.74 16 51 H 0.09 2.91 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -80.97 392.50 3.01 -77.96 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.85 Total: 13.85 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: 6.87 Total: 24.78 kcal Atomic # 7 Polarization: -129.81 SS G_CDS: -6.69 Total: -136.50 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: -0.05 Total: -32.85 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 2.03 Total: 52.75 kcal Total: -80.97 3.01 -77.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042059707.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.287 kcal (2) G-P(sol) polarization free energy of solvation -80.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds