Wall clock time and date at job start Wed Apr 1 2020 05:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.34257 * 126.53114 * 2 1 4 4 C 1.34047 * 108.23254 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.38215 * 179.97438 * 4 3 2 6 6 C 1.53000 * 109.46978 * 299.98038 * 5 4 3 7 7 C 1.53000 * 109.46782 * 59.97546 * 5 4 3 8 8 N 1.29938 * 109.23820 * 359.72109 * 4 3 2 9 9 C 1.36061 * 108.48006 * 0.44812 * 8 4 3 10 10 C 1.47418 * 126.45146 * 179.82752 * 9 8 4 11 11 O 1.21609 * 120.00404 * 185.79350 * 10 9 8 12 12 N 1.34782 * 120.00070 * 5.78913 * 10 9 8 13 13 C 1.44456 * 117.11683 * 6.09786 * 12 10 9 14 14 C 1.50920 * 113.26031 * 149.63407 * 13 12 10 15 15 C 1.48841 * 116.03936 * 32.30549 * 14 13 12 16 16 H 1.09001 * 107.13665 * 200.37582 * 15 14 13 17 17 C 1.54567 * 113.99133 * 83.40555 * 15 14 13 18 18 C 1.55321 * 100.23376 * 191.26250 * 17 15 14 19 19 N 1.47471 * 105.22248 * 36.14653 * 18 17 15 20 20 C 1.36938 * 125.62930 * 159.84835 * 19 18 17 21 21 H 1.07998 * 119.99731 * 175.51973 * 20 19 18 22 22 C 1.38811 * 119.99985 * 355.51391 * 20 19 18 23 23 N 1.31613 * 120.00015 * 355.06470 * 22 20 19 24 24 Si 1.86798 * 120.00098 * 175.06682 * 22 20 19 25 25 H 1.48500 * 109.47015 * 94.99981 * 24 22 20 26 26 H 1.48494 * 109.47507 * 214.99991 * 24 22 20 27 27 H 1.48500 * 109.46862 * 335.00162 * 24 22 20 28 28 C 1.48453 * 108.73807 * 339.86714 * 19 18 17 29 29 H 1.08998 * 109.94574 * 235.83175 * 28 19 18 30 30 C 1.43920 * 117.12389 * 186.11807 * 12 10 9 31 31 H 1.09002 * 109.46988 * 269.97786 * 1 2 3 32 32 H 1.09007 * 109.46924 * 29.97371 * 1 2 3 33 33 H 1.08993 * 109.47580 * 149.97367 * 1 2 3 34 34 H 1.08992 * 109.47295 * 179.97438 * 5 4 3 35 35 H 1.08997 * 109.47315 * 60.00025 * 6 5 4 36 36 H 1.08999 * 109.46692 * 179.97438 * 6 5 4 37 37 H 1.08999 * 109.46988 * 299.99360 * 6 5 4 38 38 H 1.08999 * 109.47500 * 60.00258 * 7 5 4 39 39 H 1.08999 * 109.47004 * 179.97438 * 7 5 4 40 40 H 1.08997 * 109.47618 * 300.00041 * 7 5 4 41 41 H 1.09008 * 108.72573 * 270.60738 * 13 12 10 42 42 H 1.09000 * 108.72953 * 28.77851 * 13 12 10 43 43 H 1.08995 * 108.16867 * 154.02076 * 14 13 12 44 44 H 1.09006 * 108.16408 * 270.81769 * 14 13 12 45 45 H 1.09000 * 111.33787 * 73.50639 * 17 15 14 46 46 H 1.09004 * 111.24568 * 308.97432 * 17 15 14 47 47 H 1.09008 * 110.30370 * 277.18610 * 18 17 15 48 48 H 1.08992 * 110.31611 * 155.11643 * 18 17 15 49 49 H 0.97001 * 120.00261 * 179.97438 * 23 22 20 50 50 H 1.09000 * 108.41739 * 89.61782 * 30 12 10 51 51 H 1.09003 * 108.28416 * 332.28553 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3061 1.0788 0.0000 4 6 3.5788 0.6579 -0.0006 5 6 4.7930 1.5505 -0.0013 6 6 4.7764 2.4331 -1.2509 7 6 4.7770 2.4343 1.2475 8 7 3.6001 -0.6413 0.0050 9 6 2.3169 -1.0937 -0.0007 10 6 1.8852 -2.5032 -0.0008 11 8 0.7058 -2.7780 -0.1126 12 7 2.7976 -3.4875 0.1228 13 6 4.1615 -3.0917 0.3868 14 6 4.9307 -4.1071 1.1961 15 6 4.5597 -5.5321 0.9793 16 1 4.9057 -6.0900 1.8495 17 6 5.2459 -6.1810 -0.2443 18 6 4.4356 -7.5021 -0.3467 19 7 3.0563 -7.1405 0.0296 20 6 1.9314 -7.8583 -0.2778 21 1 0.9709 -7.5474 0.1058 22 6 2.0255 -8.9853 -1.0827 23 7 3.1781 -9.3090 -1.6295 24 14 0.5165 -10.0426 -1.3896 25 1 -0.1306 -9.6250 -2.6593 26 1 0.9219 -11.4679 -1.4861 27 1 -0.4416 -9.8754 -0.2674 28 6 3.0887 -5.8696 0.7962 29 1 2.6064 -6.0068 1.7640 30 6 2.3271 -4.8401 -0.0204 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8903 -0.5135 33 1 -0.3634 -0.8897 -0.5142 34 1 5.6944 0.9378 -0.0012 35 1 3.8750 3.0460 -1.2510 36 1 5.6544 3.0790 -1.2512 37 1 4.7878 1.8035 -2.1406 38 1 4.7888 1.8056 2.1378 39 1 5.6555 3.0796 1.2472 40 1 3.8756 3.0471 1.2475 41 1 4.6729 -2.9422 -0.5642 42 1 4.1528 -2.1472 0.9309 43 1 5.9901 -3.9929 0.9664 44 1 4.7877 -3.8787 2.2524 45 1 6.3000 -6.3785 -0.0494 46 1 5.1195 -5.5701 -1.1381 47 1 4.8340 -8.2448 0.3447 48 1 4.4616 -7.8839 -1.3672 49 1 3.2440 -10.0968 -2.1916 50 1 2.3927 -5.1180 -1.0723 51 1 1.2790 -4.8710 0.2776 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042059708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:17 Heat of formation + Delta-G solvation = 23.973641 kcal Electronic energy + Delta-G solvation = -32020.046382 eV Core-core repulsion = 27922.239177 eV Total energy + Delta-G solvation = -4097.807205 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.62879 -40.13849 -38.16665 -36.15069 -35.50882 -34.74419 -33.08699 -32.09212 -31.46847 -29.42015 -28.51038 -27.66093 -27.33611 -24.95025 -24.50825 -23.30952 -22.63945 -22.39175 -21.19764 -20.24295 -19.35555 -17.80032 -17.13755 -17.06975 -16.73052 -16.39904 -15.60996 -15.42068 -15.18027 -14.79182 -14.67519 -14.56906 -13.97018 -13.88979 -13.75260 -13.48524 -13.41453 -13.09644 -12.85616 -12.65157 -12.60624 -12.36529 -12.17905 -12.00066 -11.79438 -11.67712 -11.54537 -11.48535 -11.41287 -11.20439 -10.97026 -10.74132 -10.72023 -10.46447 -10.06568 -9.94581 -9.74258 -9.64585 -9.53072 -9.36892 -8.91960 -8.67278 -8.05075 -6.85451 -5.59677 -3.05903 1.01489 1.92819 2.30220 3.25328 3.38373 3.43804 3.49068 3.51193 3.65203 4.34620 4.50116 4.52810 4.56710 4.62741 4.83105 5.05553 5.11893 5.15121 5.16890 5.18976 5.28738 5.31690 5.33146 5.38770 5.43934 5.48412 5.62870 5.70992 5.72611 5.74263 5.75196 5.80804 5.85572 5.93617 5.95929 6.11298 6.23071 6.25540 6.35357 6.42342 6.56037 6.64073 6.70614 6.94884 7.04043 7.14288 7.37239 7.52084 7.66899 7.73299 7.89001 8.38575 8.42165 9.24258 9.84043 10.48117 11.40613 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016803 B = 0.002865 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.944975 B = 9769.227290 C =10883.487239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.035 3.965 3 O -0.195 6.195 4 C 0.191 3.809 5 C 0.004 3.996 6 C -0.150 4.150 7 C -0.150 4.150 8 N -0.450 5.450 9 C -0.067 4.067 10 C 0.583 3.417 11 O -0.539 6.539 12 N -0.570 5.570 13 C 0.112 3.888 14 C -0.109 4.109 15 C -0.094 4.094 16 H 0.060 0.940 17 C -0.138 4.138 18 C 0.145 3.855 19 N -0.596 5.596 20 C -0.221 4.221 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.164 3.836 29 H 0.043 0.957 30 C 0.102 3.898 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.103 0.897 43 H 0.073 0.927 44 H 0.055 0.945 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.010 0.990 48 H 0.110 0.890 49 H 0.251 0.749 50 H 0.069 0.931 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.142 25.169 4.663 26.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.021 4.021 3 O -0.083 6.083 4 C -0.017 4.017 5 C -0.016 4.016 6 C -0.208 4.208 7 C -0.208 4.208 8 N -0.179 5.179 9 C -0.187 4.187 10 C 0.370 3.630 11 O -0.417 6.417 12 N -0.300 5.300 13 C -0.011 4.011 14 C -0.148 4.148 15 C -0.113 4.113 16 H 0.079 0.921 17 C -0.176 4.176 18 C 0.021 3.979 19 N -0.320 5.320 20 C -0.350 4.350 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.569 5.569 24 Si 0.744 3.256 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 C 0.056 3.944 29 H 0.061 0.939 30 C -0.022 4.022 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.121 0.879 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.028 0.972 48 H 0.128 0.872 49 H 0.062 0.938 50 H 0.088 0.912 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.048 24.340 4.505 25.263 hybrid contribution -1.168 -0.284 -0.121 1.208 sum 3.880 24.056 4.384 24.758 Atomic orbital electron populations 1.20610 0.82589 1.05516 1.04567 1.23716 0.95053 0.83235 1.00094 1.84267 1.17930 1.36287 1.69769 1.26326 0.84032 0.90508 1.00882 1.19766 0.89938 0.94284 0.97574 1.21896 1.03091 0.99531 0.96298 1.21901 1.03105 0.99538 0.96266 1.71048 1.21394 1.08146 1.17349 1.21581 0.88618 0.95802 1.12656 1.16976 0.85554 0.82692 0.77815 1.90750 1.16472 1.82909 1.51596 1.46640 1.08567 1.06633 1.68148 1.21114 0.81200 0.98309 1.00440 1.20413 1.00188 0.94337 0.99822 1.20550 0.96333 0.94573 0.99885 0.92108 1.23031 0.98206 0.99728 0.96651 1.22091 0.82093 0.90553 1.03193 1.45010 1.03518 1.21245 1.62269 1.19094 0.86297 1.05043 1.24539 0.90402 1.24774 0.97181 0.98989 0.99617 1.69748 1.22798 1.27703 1.36626 0.86060 0.81786 0.79682 0.78053 1.21624 1.21711 1.20634 1.20526 0.92756 0.87067 0.94077 0.93899 1.21700 0.99697 0.78731 1.02083 0.89198 0.90333 0.86605 0.86664 0.91878 0.90799 0.91797 0.91851 0.90807 0.91874 0.92563 0.87916 0.90880 0.92664 0.92284 0.92317 0.97187 0.87247 0.93799 0.91248 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 9.94 36.00 0.36 -0.43 16 2 C 0.04 0.45 7.44 -35.08 -0.26 0.19 16 3 O -0.20 -2.27 10.73 6.52 0.07 -2.20 16 4 C 0.19 2.11 6.81 -13.08 -0.09 2.02 16 5 C 0.00 0.03 3.39 -91.77 -0.31 -0.29 16 6 C -0.15 -0.87 9.18 37.16 0.34 -0.53 16 7 C -0.15 -0.83 9.18 37.16 0.34 -0.49 16 8 N -0.45 -6.11 7.79 -7.66 -0.06 -6.17 16 9 C -0.07 -1.02 6.49 -83.02 -0.54 -1.56 16 10 C 0.58 10.55 7.54 -12.52 -0.09 10.46 16 11 O -0.54 -10.78 13.95 5.27 0.07 -10.70 16 12 N -0.57 -10.39 3.14 -180.52 -0.57 -10.95 16 13 C 0.11 1.73 5.15 -6.18 -0.03 1.70 16 14 C -0.11 -1.59 5.46 -29.81 -0.16 -1.76 16 15 C -0.09 -1.70 2.34 -92.33 -0.22 -1.91 16 16 H 0.06 1.09 8.10 -51.93 -0.42 0.67 16 17 C -0.14 -2.65 6.59 -24.68 -0.16 -2.81 16 18 C 0.15 3.56 6.00 -2.28 -0.01 3.54 16 19 N -0.60 -15.29 2.91 -163.16 -0.47 -15.77 16 20 C -0.22 -6.21 9.90 -15.06 -0.15 -6.36 16 21 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 22 C -0.01 -0.29 5.47 -17.43 -0.10 -0.38 16 23 N -0.92 -27.00 10.10 55.49 0.56 -26.44 16 24 Si 0.91 22.56 29.56 -169.99 -5.02 17.54 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 28 C 0.16 3.51 3.56 -67.91 -0.24 3.26 16 29 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 30 C 0.10 2.15 5.45 -5.98 -0.03 2.12 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.12 1.41 6.37 -51.93 -0.33 1.08 16 34 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 42 H 0.10 1.50 5.02 -51.93 -0.26 1.23 16 43 H 0.07 0.92 8.00 -51.93 -0.42 0.51 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.01 0.26 8.14 -51.92 -0.42 -0.16 16 48 H 0.11 3.02 5.73 -51.93 -0.30 2.73 16 49 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 50 H 0.07 1.66 7.87 -51.93 -0.41 1.25 16 51 H 0.08 1.74 6.90 -51.93 -0.36 1.39 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -32.40 395.62 -9.20 -41.60 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -8.38 Total: 0.36 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -1.36 Total: 6.77 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.54 Total: -59.33 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.14 Total: -12.90 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.40 -9.20 -41.60 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042059708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.576 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds