Wall clock time and date at job start Wed Apr 1 2020 04:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30014 * 127.33589 * 2 1 4 4 O 1.20659 * 112.30397 * 179.97438 * 3 2 1 5 5 C 1.33494 * 113.15769 * 359.71650 * 4 3 2 6 6 C 1.50696 * 126.83003 * 180.31530 * 5 4 3 7 7 C 1.53003 * 109.46892 * 300.16381 * 6 5 4 8 8 C 1.52995 * 109.47394 * 60.16474 * 6 5 4 9 9 C 1.37357 * 106.33719 * 0.45126 * 5 4 3 10 10 C 1.47396 * 128.56471 * 179.85826 * 9 5 4 11 11 O 1.21612 * 120.00078 * 269.70389 * 10 9 5 12 12 N 1.34779 * 120.00074 * 89.69991 * 10 9 5 13 13 C 1.47153 * 121.21925 * 359.72172 * 12 10 9 14 14 C 1.52831 * 107.98095 * 122.98354 * 13 12 10 15 15 C 1.53092 * 110.57956 * 57.34400 * 14 13 12 16 16 H 1.08997 * 112.49637 * 70.55771 * 15 14 13 17 17 C 1.56034 * 106.38497 * 195.43789 * 15 14 13 18 18 C 1.54503 * 102.60864 * 78.37065 * 17 15 14 19 19 N 1.47424 * 107.15059 * 22.85381 * 18 17 15 20 20 C 1.36938 * 126.05865 * 181.65340 * 19 18 17 21 21 H 1.08007 * 119.99643 * 179.97438 * 20 19 18 22 22 C 1.38808 * 120.00491 * 359.95434 * 20 19 18 23 23 N 1.31624 * 119.99588 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00643 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46947 * 89.99860 * 24 22 20 26 26 H 1.48495 * 109.47665 * 210.00146 * 24 22 20 27 27 H 1.48499 * 109.47145 * 330.00410 * 24 22 20 28 28 C 1.46465 * 107.88108 * 1.61426 * 19 18 17 29 29 H 1.09001 * 107.86010 * 89.63938 * 28 19 18 30 30 C 1.46766 * 121.21692 * 180.02562 * 12 10 9 31 31 H 1.08995 * 109.47430 * 270.04347 * 1 2 3 32 32 H 1.09004 * 109.47304 * 30.04813 * 1 2 3 33 33 H 1.09001 * 109.47233 * 150.04375 * 1 2 3 34 34 H 1.09007 * 109.46940 * 180.16870 * 6 5 4 35 35 H 1.08997 * 109.46902 * 60.00441 * 7 6 5 36 36 H 1.08997 * 109.46753 * 180.02562 * 7 6 5 37 37 H 1.08995 * 109.47029 * 300.00118 * 7 6 5 38 38 H 1.08997 * 109.47181 * 179.97438 * 8 6 5 39 39 H 1.08997 * 109.47380 * 300.00160 * 8 6 5 40 40 H 1.09004 * 109.47255 * 60.00204 * 8 6 5 41 41 H 1.09003 * 109.75606 * 242.60647 * 13 12 10 42 42 H 1.09005 * 109.75396 * 3.35952 * 13 12 10 43 43 H 1.09000 * 109.25500 * 297.05850 * 14 13 12 44 44 H 1.09001 * 109.22346 * 177.60928 * 14 13 12 45 45 H 1.09008 * 110.77831 * 196.64931 * 17 15 14 46 46 H 1.08996 * 110.77902 * 319.89673 * 17 15 14 47 47 H 1.09003 * 109.90104 * 142.23561 * 18 17 15 48 48 H 1.08997 * 109.89878 * 263.46835 * 18 17 15 49 49 H 0.97001 * 119.99986 * 179.97438 * 23 22 20 50 50 H 1.09003 * 109.22633 * 352.57740 * 30 12 10 51 51 H 1.08998 * 109.22850 * 111.94107 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2954 1.0337 0.0000 4 8 3.4607 0.7208 0.0005 5 6 3.6494 -0.6007 0.0070 6 6 4.9712 -1.3245 0.0161 7 6 5.7722 -0.9389 -1.2292 8 6 5.7576 -0.9347 1.2692 9 6 2.3992 -1.1696 0.0006 10 6 2.0401 -2.5991 0.0010 11 8 1.8928 -3.1893 -1.0521 12 7 1.8750 -3.2523 1.1683 13 6 2.0526 -2.5661 2.4579 14 6 0.7569 -2.7162 3.2545 15 6 0.4073 -4.1951 3.4397 16 1 1.0855 -4.7011 4.1267 17 6 -1.0855 -4.2412 3.8917 18 6 -1.8465 -4.0241 2.5647 19 7 -0.9397 -4.4235 1.4731 20 6 -1.2131 -4.3568 0.1330 21 1 -0.4731 -4.6767 -0.5857 22 6 -2.4415 -3.8783 -0.3019 23 7 -3.3433 -3.4883 0.5740 24 14 -2.8142 -3.7866 -2.1299 25 1 -3.4335 -5.0614 -2.5734 26 1 -3.7520 -2.6646 -2.3883 27 1 -1.5535 -3.5611 -2.8815 28 6 0.3058 -4.9034 2.0760 29 1 0.2016 -5.9742 2.2510 30 6 1.5181 -4.6755 1.1998 31 1 -0.3634 0.0008 1.0276 32 1 -0.3634 0.8896 -0.5146 33 1 -0.3634 -0.8904 -0.5132 34 1 4.7963 -2.4004 0.0168 35 1 5.9471 0.1369 -1.2300 36 1 6.7280 -1.4628 -1.2229 37 1 5.2120 -1.2167 -2.1219 38 1 6.7134 -1.4585 1.2760 39 1 5.9324 0.1412 1.2684 40 1 5.1869 -1.2093 2.1564 41 1 2.8773 -3.0208 3.0067 42 1 2.2603 -1.5097 2.2876 43 1 -0.0530 -2.2194 2.7203 44 1 0.8809 -2.2509 4.2324 45 1 -1.3291 -5.2123 4.3229 46 1 -1.3001 -3.4406 4.5995 47 1 -2.7441 -4.6422 2.5464 48 1 -2.1147 -2.9730 2.4586 49 1 -4.2015 -3.1536 0.2702 50 1 1.2975 -5.0127 0.1870 51 1 2.3583 -5.2477 1.5929 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042100265.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:17 Heat of formation + Delta-G solvation = 47.256216 kcal Electronic energy + Delta-G solvation = -33796.685287 eV Core-core repulsion = 29699.887690 eV Total energy + Delta-G solvation = -4096.797597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.74411 -39.94597 -38.07269 -36.16562 -35.01274 -34.32935 -32.85109 -31.32853 -30.84789 -29.16625 -28.45512 -28.41448 -27.43716 -25.18158 -24.51775 -23.08378 -22.93190 -22.56504 -20.18453 -19.98063 -19.17582 -18.41492 -17.65468 -17.24994 -16.56935 -16.23081 -15.74860 -15.34550 -14.93332 -14.52152 -14.29315 -14.14351 -13.97122 -13.59341 -13.50563 -13.09177 -13.05724 -12.92381 -12.83293 -12.67524 -12.46041 -12.44800 -12.01863 -11.68066 -11.60443 -11.53253 -11.48169 -11.38971 -11.28100 -10.94763 -10.83702 -10.79832 -10.71003 -10.11322 -9.92790 -9.88887 -9.75736 -9.69148 -9.55505 -9.51635 -9.18314 -8.54182 -8.20340 -6.77782 -5.65345 -2.97285 1.41882 2.10144 2.75254 2.99337 3.43150 3.45418 3.51827 3.58901 4.21168 4.29786 4.56705 4.64203 4.78938 4.83167 4.92921 5.05037 5.10328 5.20239 5.31237 5.36259 5.45786 5.48676 5.51670 5.54212 5.62804 5.66392 5.69856 5.71046 5.75616 5.83445 5.84774 5.94077 5.95613 5.97262 5.99830 6.01815 6.10776 6.22268 6.27887 6.40230 6.43608 6.48503 6.59901 6.70434 6.90494 7.03596 7.61342 7.63013 7.77297 7.89828 8.28833 8.37070 8.54099 9.28271 9.88875 10.53355 11.46674 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011321 B = 0.004902 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.732605 B = 5710.050656 C = 6688.578510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.064 3.936 3 N -0.363 5.363 4 O 0.094 5.906 5 C 0.007 3.993 6 C -0.013 4.013 7 C -0.149 4.149 8 C -0.147 4.147 9 C -0.227 4.227 10 C 0.604 3.396 11 O -0.521 6.521 12 N -0.582 5.582 13 C 0.114 3.886 14 C -0.122 4.122 15 C -0.101 4.101 16 H 0.076 0.924 17 C -0.143 4.143 18 C 0.179 3.821 19 N -0.588 5.588 20 C -0.213 4.213 21 H 0.081 0.919 22 C -0.005 4.005 23 N -0.924 5.924 24 Si 0.897 3.103 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.277 1.277 28 C 0.154 3.846 29 H 0.029 0.971 30 C 0.114 3.886 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.054 0.946 46 H 0.058 0.942 47 H 0.041 0.959 48 H 0.045 0.955 49 H 0.249 0.751 50 H 0.097 0.903 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.750 4.279 6.544 18.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.098 4.098 3 N -0.070 5.070 4 O 0.033 5.967 5 C -0.057 4.057 6 C -0.032 4.032 7 C -0.206 4.206 8 C -0.205 4.205 9 C -0.234 4.234 10 C 0.389 3.611 11 O -0.396 6.396 12 N -0.314 5.314 13 C -0.009 4.009 14 C -0.160 4.160 15 C -0.120 4.120 16 H 0.094 0.906 17 C -0.182 4.182 18 C 0.055 3.945 19 N -0.314 5.314 20 C -0.341 4.341 21 H 0.099 0.901 22 C -0.201 4.201 23 N -0.572 5.572 24 Si 0.727 3.273 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.203 1.203 28 C 0.045 3.955 29 H 0.046 0.954 30 C -0.009 4.009 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.077 0.923 47 H 0.059 0.941 48 H 0.063 0.937 49 H 0.060 0.940 50 H 0.115 0.885 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 16.281 5.344 5.803 18.092 hybrid contribution -0.650 -0.642 -0.894 1.278 sum 15.631 4.702 4.909 17.045 Atomic orbital electron populations 1.20261 0.84532 1.04632 1.04169 1.24862 0.98809 0.86287 0.99844 1.73601 0.89090 1.23370 1.20967 1.84466 1.21558 1.22423 1.68235 1.24500 0.96663 0.83885 1.00645 1.19828 0.87090 0.98645 0.97639 1.21870 0.99872 1.02383 0.96480 1.21874 0.99990 1.02497 0.96116 1.22030 0.92487 0.95824 1.13098 1.16716 0.77037 0.83571 0.83774 1.90817 1.50323 1.67605 1.30874 1.47696 1.67599 1.11217 1.04877 1.21618 0.98017 0.96999 0.84305 1.21828 0.97759 0.97246 0.99178 1.22367 0.96960 0.95313 0.97410 0.90615 1.23159 0.95096 1.00217 0.99701 1.21202 0.91424 0.99488 0.82407 1.44287 1.09972 1.75006 1.02116 1.19021 0.98687 1.35618 0.80760 0.90150 1.24653 0.96635 1.01647 0.97139 1.69955 1.06644 1.49434 1.31208 0.86312 0.77999 0.77237 0.85714 1.21746 1.21835 1.20264 1.20724 0.87724 0.96192 0.90859 0.95417 1.21476 0.96363 0.79520 1.03553 0.89549 0.90503 0.88671 0.88140 0.91699 0.91194 0.91843 0.91180 0.91652 0.92000 0.91710 0.90999 0.90056 0.92072 0.92743 0.92335 0.94104 0.93702 0.94045 0.88521 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 10.49 36.00 0.38 -0.97 16 2 C 0.06 1.10 7.59 -79.77 -0.61 0.49 16 3 N -0.36 -5.94 12.01 34.78 0.42 -5.52 16 4 O 0.09 1.37 11.06 18.65 0.21 1.58 16 5 C 0.01 0.09 6.06 -34.63 -0.21 -0.12 16 6 C -0.01 -0.13 3.33 -91.77 -0.31 -0.43 16 7 C -0.15 -1.33 9.18 37.16 0.34 -0.99 16 8 C -0.15 -1.14 9.18 37.16 0.34 -0.80 16 9 C -0.23 -3.83 4.23 -102.89 -0.44 -4.26 16 10 C 0.60 11.50 7.20 -12.53 -0.09 11.41 16 11 O -0.52 -11.99 16.56 5.27 0.09 -11.90 16 12 N -0.58 -9.87 2.97 -175.34 -0.52 -10.39 16 13 C 0.11 1.57 6.35 -3.77 -0.02 1.54 16 14 C -0.12 -1.82 5.04 -26.77 -0.13 -1.95 16 15 C -0.10 -1.57 3.68 -88.43 -0.33 -1.90 16 16 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 17 C -0.14 -2.48 6.32 -24.32 -0.15 -2.63 16 18 C 0.18 4.10 4.61 -2.75 -0.01 4.09 16 19 N -0.59 -13.93 3.20 -164.41 -0.53 -14.46 16 20 C -0.21 -5.74 9.70 -15.06 -0.15 -5.88 16 21 H 0.08 2.25 6.51 -52.48 -0.34 1.90 16 22 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 23 N -0.92 -26.54 10.38 55.49 0.58 -25.97 16 24 Si 0.90 22.87 29.55 -169.99 -5.02 17.85 16 25 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 27 H -0.28 -7.22 7.11 56.52 0.40 -6.82 16 28 C 0.15 2.90 2.97 -68.28 -0.20 2.70 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 30 C 0.11 2.02 5.68 -4.75 -0.03 1.99 16 31 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 32 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 34 H 0.10 1.10 7.71 -51.92 -0.40 0.70 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.98 6.39 -51.93 -0.33 0.65 16 43 H 0.08 1.52 6.85 -51.93 -0.36 1.16 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.05 0.90 8.14 -51.92 -0.42 0.47 16 46 H 0.06 0.92 7.98 -51.93 -0.41 0.51 16 47 H 0.04 1.06 7.57 -51.93 -0.39 0.67 16 48 H 0.04 1.14 7.04 -51.93 -0.37 0.78 16 49 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 50 H 0.10 2.02 5.54 -51.93 -0.29 1.74 16 51 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 400.17 15.07 6.03 6.03 Total: -1.00 -31.93 400.17 -8.83 -40.76 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -8.37 Total: -0.02 kcal Atomic # 6 Polarization: 3.75 SS G_CDS: -1.71 Total: 2.05 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.05 Total: -56.33 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.29 Total: -10.33 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -31.93 -8.83 -40.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042100265.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.017 kcal (2) G-P(sol) polarization free energy of solvation -31.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds