Wall clock time and date at job start Wed Apr 1 2020 04:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30012 * 127.33164 * 2 1 4 4 O 1.20661 * 112.30097 * 179.73412 * 3 2 1 5 5 C 1.33491 * 113.15580 * 0.50012 * 4 3 2 6 6 C 1.50698 * 126.83112 * 179.77772 * 5 4 3 7 7 C 1.52999 * 109.47450 * 299.69227 * 6 5 4 8 8 C 1.53006 * 109.47054 * 59.69296 * 6 5 4 9 9 C 1.37362 * 106.33978 * 359.51990 * 5 4 3 10 10 C 1.47402 * 128.56638 * 180.27825 * 9 5 4 11 11 O 1.21608 * 119.99723 * 89.99982 * 10 9 5 12 12 N 1.34777 * 119.99901 * 270.00660 * 10 9 5 13 13 C 1.46589 * 119.75193 * 359.97438 * 12 10 9 14 14 C 1.53891 * 110.71217 * 132.26831 * 13 12 10 15 15 C 1.51976 * 107.28866 * 51.80697 * 14 13 12 16 16 H 1.08994 * 111.01898 * 57.33047 * 15 14 13 17 17 C 1.53699 * 115.00393 * 184.55830 * 15 14 13 18 18 C 1.55303 * 101.81450 * 153.45815 * 17 15 14 19 19 N 1.48149 * 107.04468 * 337.55329 * 18 17 15 20 20 C 1.36936 * 126.40081 * 174.99535 * 19 18 17 21 21 H 1.08001 * 120.00479 * 187.58746 * 20 19 18 22 22 C 1.38821 * 119.99543 * 7.59392 * 20 19 18 23 23 N 1.31616 * 119.99976 * 8.10822 * 22 20 19 24 24 Si 1.86799 * 119.99737 * 188.10358 * 22 20 19 25 25 H 1.48502 * 109.47210 * 94.80457 * 24 22 20 26 26 H 1.48501 * 109.46840 * 214.80566 * 24 22 20 27 27 H 1.48496 * 109.47262 * 334.80180 * 24 22 20 28 28 C 1.45501 * 107.20614 * 355.00136 * 19 18 17 29 29 H 1.09008 * 109.57175 * 273.37212 * 28 19 18 30 30 C 1.47796 * 119.74880 * 179.72719 * 12 10 9 31 31 H 1.08999 * 109.47522 * 269.95880 * 1 2 3 32 32 H 1.09001 * 109.47297 * 29.96108 * 1 2 3 33 33 H 1.08999 * 109.46889 * 149.95997 * 1 2 3 34 34 H 1.09002 * 109.47461 * 179.68685 * 6 5 4 35 35 H 1.08999 * 109.47616 * 180.02562 * 7 6 5 36 36 H 1.09007 * 109.46749 * 299.99934 * 7 6 5 37 37 H 1.08997 * 109.46770 * 59.99424 * 7 6 5 38 38 H 1.09000 * 109.46774 * 59.99953 * 8 6 5 39 39 H 1.08999 * 109.46821 * 180.02562 * 8 6 5 40 40 H 1.09002 * 109.46488 * 299.99985 * 8 6 5 41 41 H 1.09006 * 109.23258 * 252.57881 * 13 12 10 42 42 H 1.08997 * 109.23138 * 11.99147 * 13 12 10 43 43 H 1.09001 * 109.89457 * 171.24996 * 14 13 12 44 44 H 1.09000 * 109.88870 * 292.28522 * 14 13 12 45 45 H 1.08998 * 110.95652 * 271.58843 * 17 15 14 46 46 H 1.08997 * 110.96285 * 35.28968 * 17 15 14 47 47 H 1.09009 * 109.91492 * 96.90356 * 18 17 15 48 48 H 1.09004 * 109.92024 * 217.99910 * 18 17 15 49 49 H 0.96997 * 119.99631 * 180.02562 * 23 22 20 50 50 H 1.09000 * 110.06854 * 350.46597 * 30 12 10 51 51 H 1.09005 * 110.06620 * 112.03427 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7209 0.0052 5 6 3.6495 -0.6006 -0.0011 6 6 4.9713 -1.3244 -0.0020 7 6 5.7645 -0.9363 -1.2514 8 6 5.7656 -0.9372 1.2471 9 6 2.3992 -1.1695 -0.0007 10 6 2.0401 -2.5992 -0.0006 11 8 1.8924 -3.1888 1.0526 12 7 1.8757 -3.2527 -1.1678 13 6 2.0548 -2.5364 -2.4341 14 6 2.9508 -3.3407 -3.3924 15 6 2.3726 -4.7434 -3.4811 16 1 1.3358 -4.7184 -3.8161 17 6 3.1997 -5.7356 -4.3140 18 6 2.8053 -7.0945 -3.6737 19 7 2.3148 -6.8041 -2.3063 20 6 1.7761 -7.7057 -1.4276 21 1 1.3386 -7.3624 -0.5018 22 6 1.7926 -9.0612 -1.7269 23 7 2.4633 -9.4962 -2.7725 24 14 0.8629 -10.2677 -0.6455 25 1 -0.4830 -10.5142 -1.2225 26 1 1.6128 -11.5475 -0.5739 27 1 0.7202 -9.7007 0.7195 28 6 2.5120 -5.3818 -2.0712 29 1 3.5195 -5.2107 -1.6917 30 6 1.5216 -4.6876 -1.1612 31 1 -0.3634 -0.0007 1.0276 32 1 -0.3634 0.8903 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 4.7964 -2.4003 -0.0022 35 1 6.7203 -1.4602 -1.2523 36 1 5.1985 -1.2123 -2.1413 37 1 5.9393 0.1395 -1.2511 38 1 5.2005 -1.2137 2.1372 39 1 6.7218 -1.4604 1.2462 40 1 5.9404 0.1387 1.2473 41 1 1.0813 -2.3803 -2.8991 42 1 2.5178 -1.5695 -2.2373 43 1 2.9501 -2.8763 -4.3786 44 1 3.9679 -3.3815 -3.0026 45 1 2.9092 -5.7004 -5.3639 46 1 4.2670 -5.5455 -4.2002 47 1 2.0158 -7.5656 -4.2593 48 1 3.6751 -7.7499 -3.6282 49 1 2.4744 -10.4432 -2.9818 50 1 1.6002 -5.0877 -0.1503 51 1 0.5092 -4.8248 -1.5412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042100267.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:23 Heat of formation + Delta-G solvation = 45.292288 kcal Electronic energy + Delta-G solvation = -32672.338752 eV Core-core repulsion = 28575.455993 eV Total energy + Delta-G solvation = -4096.882759 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.03251 -40.19934 -38.28326 -36.29039 -35.43729 -34.69007 -32.94502 -31.43625 -31.13884 -29.47217 -28.93804 -28.52329 -27.47771 -25.27416 -24.63069 -23.15540 -23.05930 -22.30655 -20.35780 -20.04490 -19.64195 -18.99209 -17.93221 -17.51914 -16.64720 -16.38642 -15.89489 -15.67502 -14.88814 -14.78418 -14.50973 -14.32974 -13.87871 -13.68985 -13.67094 -13.57189 -13.43854 -13.23664 -13.06269 -13.03139 -12.70131 -12.49700 -12.30874 -11.98084 -11.76375 -11.64575 -11.58712 -11.52399 -11.40323 -11.06367 -10.94992 -10.85585 -10.79886 -10.24368 -10.11941 -10.04395 -9.97679 -9.92554 -9.69753 -9.56456 -9.39427 -8.66192 -8.53247 -6.87066 -5.75177 -3.09820 1.16755 1.75935 2.42426 2.64910 3.11599 3.40077 3.46467 3.48054 3.90008 4.00236 4.45520 4.48602 4.55964 4.72304 4.75632 4.83439 4.91853 4.98618 5.11151 5.18734 5.25813 5.32481 5.33776 5.39312 5.44546 5.46571 5.50548 5.55465 5.56362 5.63544 5.71645 5.72119 5.81926 5.85557 5.90363 5.93145 5.96833 6.02232 6.06396 6.11203 6.30993 6.41523 6.49656 6.63284 6.68744 6.99155 7.40594 7.45789 7.61533 7.77033 8.06557 8.14936 8.20479 9.15087 9.78998 10.45705 11.37059 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013959 B = 0.003273 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.395197 B = 8552.393559 C = 8935.182043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.052 3.948 3 N -0.358 5.358 4 O 0.098 5.902 5 C 0.023 3.977 6 C -0.017 4.017 7 C -0.149 4.149 8 C -0.149 4.149 9 C -0.238 4.238 10 C 0.593 3.407 11 O -0.525 6.525 12 N -0.593 5.593 13 C 0.110 3.890 14 C -0.119 4.119 15 C -0.112 4.112 16 H 0.077 0.923 17 C -0.136 4.136 18 C 0.175 3.825 19 N -0.589 5.589 20 C -0.232 4.232 21 H 0.079 0.921 22 C -0.004 4.004 23 N -0.918 5.918 24 Si 0.908 3.092 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.279 1.279 28 C 0.157 3.843 29 H 0.024 0.976 30 C 0.115 3.885 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.036 0.964 48 H 0.055 0.945 49 H 0.252 0.748 50 H 0.094 0.906 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.449 20.331 -0.560 20.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.110 4.110 3 N -0.064 5.064 4 O 0.036 5.964 5 C -0.040 4.040 6 C -0.037 4.037 7 C -0.206 4.206 8 C -0.206 4.206 9 C -0.245 4.245 10 C 0.378 3.622 11 O -0.401 6.401 12 N -0.326 5.326 13 C -0.013 4.013 14 C -0.157 4.157 15 C -0.132 4.132 16 H 0.096 0.904 17 C -0.175 4.175 18 C 0.051 3.949 19 N -0.314 5.314 20 C -0.360 4.360 21 H 0.097 0.903 22 C -0.200 4.200 23 N -0.564 5.564 24 Si 0.738 3.262 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.204 1.204 28 C 0.048 3.952 29 H 0.041 0.959 30 C -0.006 4.006 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.055 0.945 48 H 0.073 0.927 49 H 0.063 0.937 50 H 0.113 0.887 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.148 21.051 0.015 21.285 hybrid contribution -0.662 -1.489 0.457 1.693 sum 2.486 19.561 0.472 19.724 Atomic orbital electron populations 1.20213 0.85206 1.04041 1.03962 1.24724 0.98536 0.86550 1.01178 1.73609 0.89183 1.23339 1.20297 1.84491 1.21352 1.22571 1.67949 1.24636 0.96902 0.83547 0.98959 1.19934 0.86923 0.98883 0.97947 1.21891 1.00286 1.02423 0.95995 1.21875 1.00190 1.02346 0.96193 1.21961 0.92722 0.95500 1.14304 1.16971 0.77340 0.83841 0.84023 1.90835 1.50581 1.67723 1.30950 1.48210 1.67905 1.11330 1.05119 1.21703 1.00219 0.94967 0.84394 1.21810 0.99161 0.96161 0.98605 1.22259 0.99821 0.92873 0.98245 0.90439 1.22707 0.98678 0.97788 0.98295 1.21527 0.98581 0.90781 0.84004 1.44132 1.72942 1.01078 1.13296 1.19037 1.30733 0.86591 0.99626 0.90293 1.24786 1.00183 0.96722 0.98351 1.69950 1.44041 1.13699 1.28746 0.86153 0.79300 0.80856 0.79845 1.21625 1.21745 1.20446 1.20854 0.95626 0.86390 0.92284 0.95907 1.21724 0.99108 0.76785 1.03016 0.89613 0.89961 0.89822 0.87765 0.90836 0.91846 0.91656 0.91865 0.90881 0.91697 0.91547 0.90803 0.90781 0.91316 0.92259 0.92373 0.94546 0.92726 0.93744 0.88734 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.49 36.01 0.38 -0.37 16 2 C 0.05 0.65 7.59 -79.77 -0.61 0.04 16 3 N -0.36 -4.59 12.01 34.78 0.42 -4.17 16 4 O 0.10 1.18 11.06 18.65 0.21 1.38 16 5 C 0.02 0.27 5.84 -34.63 -0.20 0.07 16 6 C -0.02 -0.17 3.33 -91.77 -0.31 -0.47 16 7 C -0.15 -1.13 9.18 37.16 0.34 -0.79 16 8 C -0.15 -1.25 9.18 37.16 0.34 -0.91 16 9 C -0.24 -3.20 4.21 -102.89 -0.43 -3.63 16 10 C 0.59 9.49 7.16 -12.53 -0.09 9.40 16 11 O -0.52 -10.43 16.48 5.27 0.09 -10.34 16 12 N -0.59 -8.91 3.02 -174.26 -0.53 -9.43 16 13 C 0.11 1.31 6.23 -3.53 -0.02 1.29 16 14 C -0.12 -1.43 5.72 -26.79 -0.15 -1.59 16 15 C -0.11 -1.79 2.61 -89.51 -0.23 -2.02 16 16 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 17 C -0.14 -2.35 6.54 -25.15 -0.16 -2.51 16 18 C 0.18 4.05 5.46 -1.91 -0.01 4.04 16 19 N -0.59 -14.38 3.35 -163.13 -0.55 -14.92 16 20 C -0.23 -6.28 9.88 -15.06 -0.15 -6.43 16 21 H 0.08 2.10 7.37 -52.49 -0.39 1.71 16 22 C 0.00 -0.10 5.45 -17.43 -0.09 -0.19 16 23 N -0.92 -26.46 10.66 55.49 0.59 -25.86 16 24 Si 0.91 21.98 29.56 -169.99 -5.03 16.96 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.16 3.09 2.74 -68.03 -0.19 2.90 16 29 H 0.02 0.49 7.93 -51.92 -0.41 0.08 16 30 C 0.12 2.10 5.62 -4.16 -0.02 2.08 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 1.18 7.71 -51.93 -0.40 0.78 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 0.80 6.11 -51.93 -0.32 0.48 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.84 7.99 -51.93 -0.41 0.42 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.95 8.12 -51.93 -0.42 0.52 16 47 H 0.04 0.92 7.86 -51.92 -0.41 0.51 16 48 H 0.05 1.42 7.25 -51.93 -0.38 1.04 16 49 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 50 H 0.09 1.96 6.77 -51.93 -0.35 1.61 16 51 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 404.08 15.07 6.09 6.09 Total: -1.00 -31.87 404.08 -8.86 -40.73 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.54 Total: -1.34 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -1.61 Total: 0.91 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: -0.06 Total: -54.39 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.29 Total: -8.96 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.87 -8.86 -40.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042100267.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.020 kcal (2) G-P(sol) polarization free energy of solvation -31.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds