Wall clock time and date at job start Wed Apr 1 2020 04:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30012 * 127.33164 * 2 1 4 4 O 1.20661 * 112.30097 * 179.73412 * 3 2 1 5 5 C 1.33491 * 113.15580 * 0.50012 * 4 3 2 6 6 C 1.50698 * 126.83112 * 179.77772 * 5 4 3 7 7 C 1.52999 * 109.47450 * 299.69227 * 6 5 4 8 8 C 1.53006 * 109.47054 * 59.69296 * 6 5 4 9 9 C 1.37362 * 106.33978 * 359.51990 * 5 4 3 10 10 C 1.47402 * 128.56638 * 180.27825 * 9 5 4 11 11 O 1.21608 * 119.99723 * 89.99982 * 10 9 5 12 12 N 1.34777 * 119.99901 * 270.00660 * 10 9 5 13 13 C 1.46589 * 119.75193 * 359.97438 * 12 10 9 14 14 C 1.53891 * 110.71217 * 132.26831 * 13 12 10 15 15 C 1.51976 * 107.28866 * 51.80697 * 14 13 12 16 16 H 1.08994 * 111.01898 * 57.33047 * 15 14 13 17 17 C 1.53699 * 115.00393 * 184.55830 * 15 14 13 18 18 C 1.55303 * 101.81450 * 153.45815 * 17 15 14 19 19 N 1.48149 * 107.04468 * 337.55329 * 18 17 15 20 20 C 1.36936 * 126.40081 * 174.99535 * 19 18 17 21 21 H 1.08001 * 120.00479 * 187.58746 * 20 19 18 22 22 C 1.38821 * 119.99543 * 7.59392 * 20 19 18 23 23 N 1.31616 * 119.99976 * 8.10822 * 22 20 19 24 24 Si 1.86799 * 119.99737 * 188.10358 * 22 20 19 25 25 H 1.48502 * 109.47210 * 94.80457 * 24 22 20 26 26 H 1.48501 * 109.46840 * 214.80566 * 24 22 20 27 27 H 1.48496 * 109.47262 * 334.80180 * 24 22 20 28 28 C 1.45501 * 107.20614 * 355.00136 * 19 18 17 29 29 H 1.09008 * 109.57175 * 273.37212 * 28 19 18 30 30 C 1.47796 * 119.74880 * 179.72719 * 12 10 9 31 31 H 1.08999 * 109.47522 * 269.95880 * 1 2 3 32 32 H 1.09001 * 109.47297 * 29.96108 * 1 2 3 33 33 H 1.08999 * 109.46889 * 149.95997 * 1 2 3 34 34 H 1.09002 * 109.47461 * 179.68685 * 6 5 4 35 35 H 1.08999 * 109.47616 * 180.02562 * 7 6 5 36 36 H 1.09007 * 109.46749 * 299.99934 * 7 6 5 37 37 H 1.08997 * 109.46770 * 59.99424 * 7 6 5 38 38 H 1.09000 * 109.46774 * 59.99953 * 8 6 5 39 39 H 1.08999 * 109.46821 * 180.02562 * 8 6 5 40 40 H 1.09002 * 109.46488 * 299.99985 * 8 6 5 41 41 H 1.09006 * 109.23258 * 252.57881 * 13 12 10 42 42 H 1.08997 * 109.23138 * 11.99147 * 13 12 10 43 43 H 1.09001 * 109.89457 * 171.24996 * 14 13 12 44 44 H 1.09000 * 109.88870 * 292.28522 * 14 13 12 45 45 H 1.08998 * 110.95652 * 271.58843 * 17 15 14 46 46 H 1.08997 * 110.96285 * 35.28968 * 17 15 14 47 47 H 1.09009 * 109.91492 * 96.90356 * 18 17 15 48 48 H 1.09004 * 109.92024 * 217.99910 * 18 17 15 49 49 H 0.96997 * 119.99631 * 180.02562 * 23 22 20 50 50 H 1.09000 * 110.06854 * 350.46597 * 30 12 10 51 51 H 1.09005 * 110.06620 * 112.03427 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4608 0.7209 0.0052 5 6 3.6495 -0.6006 -0.0011 6 6 4.9713 -1.3244 -0.0020 7 6 5.7645 -0.9363 -1.2514 8 6 5.7656 -0.9372 1.2471 9 6 2.3992 -1.1695 -0.0007 10 6 2.0401 -2.5992 -0.0006 11 8 1.8924 -3.1888 1.0526 12 7 1.8757 -3.2527 -1.1678 13 6 2.0548 -2.5364 -2.4341 14 6 2.9508 -3.3407 -3.3924 15 6 2.3726 -4.7434 -3.4811 16 1 1.3358 -4.7184 -3.8161 17 6 3.1997 -5.7356 -4.3140 18 6 2.8053 -7.0945 -3.6737 19 7 2.3148 -6.8041 -2.3063 20 6 1.7761 -7.7057 -1.4276 21 1 1.3386 -7.3624 -0.5018 22 6 1.7926 -9.0612 -1.7269 23 7 2.4633 -9.4962 -2.7725 24 14 0.8629 -10.2677 -0.6455 25 1 -0.4830 -10.5142 -1.2225 26 1 1.6128 -11.5475 -0.5739 27 1 0.7202 -9.7007 0.7195 28 6 2.5120 -5.3818 -2.0712 29 1 3.5195 -5.2107 -1.6917 30 6 1.5216 -4.6876 -1.1612 31 1 -0.3634 -0.0007 1.0276 32 1 -0.3634 0.8903 -0.5132 33 1 -0.3633 -0.8896 -0.5145 34 1 4.7964 -2.4003 -0.0022 35 1 6.7203 -1.4602 -1.2523 36 1 5.1985 -1.2123 -2.1413 37 1 5.9393 0.1395 -1.2511 38 1 5.2005 -1.2137 2.1372 39 1 6.7218 -1.4604 1.2462 40 1 5.9404 0.1387 1.2473 41 1 1.0813 -2.3803 -2.8991 42 1 2.5178 -1.5695 -2.2373 43 1 2.9501 -2.8763 -4.3786 44 1 3.9679 -3.3815 -3.0026 45 1 2.9092 -5.7004 -5.3639 46 1 4.2670 -5.5455 -4.2002 47 1 2.0158 -7.5656 -4.2593 48 1 3.6751 -7.7499 -3.6282 49 1 2.4744 -10.4432 -2.9818 50 1 1.6002 -5.0877 -0.1503 51 1 0.5092 -4.8248 -1.5412 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042100267.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:22 Heat of formation + Delta-G solvation = 27.261773 kcal Electronic energy + Delta-G solvation = -32673.120614 eV Core-core repulsion = 28575.455993 eV Total energy + Delta-G solvation = -4097.664621 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.99247 -41.52883 -39.74454 -37.09575 -36.89354 -35.65791 -34.66977 -32.95089 -32.24284 -30.86763 -30.19450 -29.76315 -28.10210 -26.61134 -26.39999 -24.38192 -23.92173 -23.59644 -21.81851 -21.53174 -20.82387 -20.06400 -18.98537 -18.75243 -18.30248 -17.59885 -16.99326 -16.86614 -16.65462 -16.11435 -15.71086 -15.62120 -15.35239 -14.93130 -14.83919 -14.43536 -14.39879 -14.30350 -14.13186 -13.95701 -13.88245 -13.79063 -13.58293 -13.18315 -13.06464 -13.04918 -12.77805 -12.59606 -12.53495 -12.35259 -12.27986 -12.13488 -12.00637 -11.86492 -11.75356 -11.56920 -11.43424 -11.36799 -11.05524 -10.92928 -10.71810 -10.43618 -9.83382 -8.89049 -7.87148 -5.22515 0.21296 0.79124 1.19680 1.44633 1.44723 1.53968 1.58568 1.99959 2.49153 2.98106 3.10715 3.30912 3.39558 3.53844 3.71922 3.75982 3.91221 3.95291 3.97370 4.03249 4.14185 4.24294 4.26089 4.30703 4.39738 4.49004 4.53839 4.54559 4.60308 4.69062 4.69730 4.76863 4.79836 4.85670 4.87053 4.87636 4.92014 5.04905 5.07246 5.09275 5.15017 5.21168 5.26058 5.32189 5.34359 5.50849 5.54859 5.70203 5.76767 6.18553 6.20553 6.89516 7.07404 7.12255 7.76297 8.43492 9.23699 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013959 B = 0.003273 C = 0.003133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.395197 B = 8552.393559 C = 8935.182043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.055 3.945 3 N -0.368 5.368 4 O 0.101 5.899 5 C 0.042 3.958 6 C -0.020 4.020 7 C -0.144 4.144 8 C -0.147 4.147 9 C -0.262 4.262 10 C 0.598 3.402 11 O -0.574 6.574 12 N -0.586 5.586 13 C 0.107 3.893 14 C -0.109 4.109 15 C -0.095 4.095 16 H 0.079 0.921 17 C -0.120 4.120 18 C 0.178 3.822 19 N -0.610 5.610 20 C -0.238 4.238 21 H 0.075 0.925 22 C -0.058 4.058 23 N -0.945 5.945 24 Si 0.968 3.032 25 H -0.285 1.285 26 H -0.293 1.293 27 H -0.273 1.273 28 C 0.150 3.850 29 H 0.009 0.991 30 C 0.128 3.872 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.114 0.886 44 H 0.071 0.929 45 H 0.086 0.914 46 H 0.072 0.928 47 H 0.005 0.995 48 H 0.016 0.984 49 H 0.247 0.753 50 H 0.060 0.940 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.774 23.344 -1.797 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 N -0.076 5.076 4 O 0.041 5.959 5 C -0.022 4.022 6 C -0.039 4.039 7 C -0.202 4.202 8 C -0.204 4.204 9 C -0.270 4.270 10 C 0.385 3.615 11 O -0.454 6.454 12 N -0.318 5.318 13 C -0.014 4.014 14 C -0.147 4.147 15 C -0.115 4.115 16 H 0.097 0.903 17 C -0.158 4.158 18 C 0.053 3.947 19 N -0.335 5.335 20 C -0.367 4.367 21 H 0.093 0.907 22 C -0.252 4.252 23 N -0.594 5.594 24 Si 0.797 3.203 25 H -0.212 1.212 26 H -0.220 1.220 27 H -0.198 1.198 28 C 0.042 3.958 29 H 0.027 0.973 30 C 0.005 3.995 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.104 0.896 42 H 0.110 0.890 43 H 0.132 0.868 44 H 0.090 0.910 45 H 0.105 0.895 46 H 0.090 0.910 47 H 0.023 0.977 48 H 0.034 0.966 49 H 0.056 0.944 50 H 0.079 0.921 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.483 24.125 -1.246 24.406 hybrid contribution -0.725 -2.406 0.890 2.666 sum 2.758 21.718 -0.356 21.896 Atomic orbital electron populations 1.20345 0.83563 1.05115 1.04549 1.25082 0.99594 0.85814 1.00230 1.73608 0.89393 1.23447 1.21117 1.84492 1.21196 1.22355 1.67822 1.24958 0.97105 0.83428 0.96742 1.20055 0.86524 0.97491 0.99878 1.21899 1.00411 1.03333 0.94515 1.21889 1.00419 1.03402 0.94729 1.21709 0.93985 0.94186 1.17096 1.17250 0.76217 0.84702 0.83367 1.90807 1.52771 1.69045 1.32736 1.48202 1.67196 1.09924 1.06463 1.21981 1.01609 0.95173 0.82684 1.21803 0.98830 0.93316 1.00726 1.22180 1.00161 0.94671 0.94472 0.90251 1.22576 0.99721 0.94058 0.99403 1.21358 0.95849 0.93722 0.83722 1.44396 1.72635 1.02987 1.13498 1.19304 1.30024 0.87465 0.99948 0.90680 1.25526 1.01484 0.98321 0.99876 1.70143 1.45504 1.13442 1.30275 0.85214 0.78019 0.78542 0.78549 1.21221 1.22001 1.19823 1.20998 0.94943 0.84440 0.95409 0.97316 1.21322 0.98740 0.78768 1.00652 0.89244 0.87912 0.89677 0.89728 0.89553 0.91656 0.90509 0.93600 0.89261 0.90388 0.89564 0.88957 0.86816 0.91049 0.89501 0.90978 0.97698 0.96600 0.94361 0.92148 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.36 10.49 71.24 0.75 -0.61 16 2 C 0.05 1.27 7.59 45.16 0.34 1.61 16 3 N -0.37 -8.62 12.01 -44.78 -0.54 -9.16 16 4 O 0.10 2.20 11.06 77.00 0.85 3.05 16 5 C 0.04 0.90 5.84 25.48 0.15 1.05 16 6 C -0.02 -0.35 3.33 -11.54 -0.04 -0.39 16 7 C -0.14 -1.75 9.18 71.98 0.66 -1.09 16 8 C -0.15 -2.25 9.18 71.98 0.66 -1.59 16 9 C -0.26 -6.74 4.21 -18.74 -0.08 -6.82 16 10 C 0.60 19.08 7.16 86.66 0.62 19.70 16 11 O -0.57 -23.66 16.48 -4.06 -0.07 -23.73 16 12 N -0.59 -17.10 3.02 -823.50 -2.48 -19.58 16 13 C 0.11 2.18 6.23 86.66 0.54 2.72 16 14 C -0.11 -2.17 5.72 30.56 0.17 -1.99 16 15 C -0.10 -2.81 2.61 -10.07 -0.03 -2.84 16 16 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 17 C -0.12 -3.89 6.54 31.62 0.21 -3.68 16 18 C 0.18 8.46 5.46 86.85 0.47 8.93 16 19 N -0.61 -30.70 3.35 -670.03 -2.24 -32.94 16 20 C -0.24 -13.39 9.88 84.04 0.83 -12.56 16 21 H 0.08 4.16 7.37 -2.91 -0.02 4.14 16 22 C -0.06 -3.34 5.45 84.86 0.46 -2.88 16 23 N -0.95 -56.71 10.66 21.65 0.23 -56.48 16 24 Si 0.97 46.53 29.56 68.60 2.03 48.56 16 25 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 26 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 27 H -0.27 -12.72 7.11 99.48 0.71 -12.01 16 28 C 0.15 5.91 2.74 45.46 0.12 6.03 16 29 H 0.01 0.40 7.93 -2.38 -0.02 0.38 16 30 C 0.13 4.75 5.62 85.59 0.48 5.23 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.08 1.87 7.71 -2.39 -0.02 1.85 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 37 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 40 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.09 1.50 8.14 -2.38 -0.02 1.48 16 42 H 0.09 1.63 6.11 -2.39 -0.01 1.62 16 43 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.07 1.45 7.99 -2.39 -0.02 1.43 16 45 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 47 H 0.00 0.25 7.86 -2.38 -0.02 0.23 16 48 H 0.02 0.86 7.25 -2.38 -0.02 0.84 16 49 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 50 H 0.06 2.64 6.77 -2.39 -0.02 2.63 16 51 H 0.07 2.67 8.14 -2.38 -0.02 2.65 16 Total: -1.00 -73.87 404.08 5.02 -68.84 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.91 Total: 10.63 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: 6.33 Total: 10.81 kcal Atomic # 7 Polarization: -113.13 SS G_CDS: -5.03 Total: -118.16 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: 0.78 Total: -20.68 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -73.87 5.02 -68.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042100267.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.107 kcal (2) G-P(sol) polarization free energy of solvation -73.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds