Wall clock time and date at job start Wed Apr 1 2020 05:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.34257 * 126.52601 * 2 1 4 4 C 1.34055 * 108.22589 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.37360 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47715 * 300.02932 * 5 4 3 7 7 C 1.53003 * 109.47126 * 60.02939 * 5 4 3 8 8 N 1.29928 * 109.24343 * 359.74982 * 4 3 2 9 9 C 1.36068 * 108.47862 * 0.39924 * 8 4 3 10 10 C 1.47416 * 126.44594 * 179.86262 * 9 8 4 11 11 O 1.21616 * 119.99706 * 185.35099 * 10 9 8 12 12 N 1.34777 * 120.00592 * 5.34899 * 10 9 8 13 13 C 1.44780 * 120.18091 * 174.04416 * 12 10 9 14 14 C 1.51517 * 112.22367 * 264.53544 * 13 12 10 15 15 C 1.51311 * 113.25557 * 285.36882 * 14 13 12 16 16 H 1.08998 * 111.31493 * 185.23442 * 15 14 13 17 17 C 1.54718 * 106.48051 * 307.66320 * 15 14 13 18 18 C 1.54620 * 104.29051 * 88.98950 * 17 15 14 19 19 C 1.50875 * 105.21052 * 11.53887 * 18 17 15 20 20 H 1.08996 * 105.90207 * 122.36634 * 19 18 17 21 21 C 1.49813 * 120.17507 * 354.02908 * 12 10 9 22 22 N 1.48060 * 109.90823 * 8.03614 * 19 18 17 23 23 C 1.36937 * 127.83849 * 155.16618 * 22 19 18 24 24 H 1.07997 * 120.00520 * 36.64299 * 23 22 19 25 25 C 1.38815 * 119.99723 * 216.65245 * 23 22 19 26 26 N 1.31624 * 120.00087 * 17.98612 * 25 23 22 27 27 Si 1.86801 * 119.99637 * 197.99539 * 25 23 22 28 28 H 1.48499 * 109.47453 * 89.99867 * 27 25 23 29 29 H 1.48511 * 109.46777 * 209.99395 * 27 25 23 30 30 H 1.48500 * 109.47321 * 329.99132 * 27 25 23 31 31 H 1.09002 * 109.47694 * 269.95518 * 1 2 3 32 32 H 1.08999 * 109.47446 * 29.95768 * 1 2 3 33 33 H 1.08999 * 109.47316 * 149.95709 * 1 2 3 34 34 H 1.09001 * 109.46592 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.46944 * 59.99883 * 6 5 4 36 36 H 1.08990 * 109.47411 * 180.02562 * 6 5 4 37 37 H 1.08999 * 109.46876 * 300.00303 * 6 5 4 38 38 H 1.09008 * 109.46771 * 59.99622 * 7 5 4 39 39 H 1.08995 * 109.47478 * 179.97438 * 7 5 4 40 40 H 1.08993 * 109.47215 * 299.99930 * 7 5 4 41 41 H 1.09003 * 108.93177 * 143.83415 * 13 12 10 42 42 H 1.09001 * 108.93581 * 25.25063 * 13 12 10 43 43 H 1.09010 * 108.72637 * 164.39331 * 14 13 12 44 44 H 1.09001 * 108.72219 * 46.34551 * 14 13 12 45 45 H 1.08994 * 110.45312 * 207.83881 * 17 15 14 46 46 H 1.08998 * 110.45427 * 330.38895 * 17 15 14 47 47 H 1.08996 * 110.17345 * 252.68633 * 18 17 15 48 48 H 1.08998 * 110.53490 * 130.57783 * 18 17 15 49 49 H 1.08994 * 109.54845 * 270.56803 * 21 12 10 50 50 H 1.08997 * 109.55123 * 30.75974 * 21 12 10 51 51 H 0.96991 * 119.99546 * 6.05132 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5787 0.6579 -0.0006 5 6 4.7929 1.5507 -0.0013 6 6 4.7756 2.4342 -1.2503 7 6 4.7775 2.4336 1.2482 8 7 3.6001 -0.6411 0.0044 9 6 2.3169 -1.0936 -0.0006 10 6 1.8853 -2.5032 -0.0004 11 8 0.7050 -2.7777 -0.1034 12 7 2.7986 -3.4877 0.1140 13 6 2.3718 -4.8650 0.2442 14 6 2.3062 -5.3103 1.6909 15 6 3.6682 -5.5535 2.3035 16 1 3.5826 -5.9593 3.3115 17 6 4.4126 -6.5179 1.3497 18 6 5.1242 -5.5849 0.3427 19 6 4.9992 -4.2005 0.9292 20 1 6.0182 -3.8302 1.0407 21 6 4.2611 -3.1627 0.1067 22 7 4.4367 -4.2810 2.2965 23 6 4.5857 -3.3839 3.3203 24 1 4.6124 -2.3248 3.1107 25 6 4.7024 -3.8359 4.6276 26 7 5.0240 -5.0902 4.8641 27 14 4.4030 -2.6641 6.0511 28 1 2.9674 -2.7011 6.4293 29 1 5.2317 -3.0748 7.2131 30 1 4.7719 -1.2848 5.6429 31 1 -0.3634 -0.0008 1.0276 32 1 -0.3634 0.8903 -0.5132 33 1 -0.3634 -0.8896 -0.5145 34 1 5.6943 0.9379 -0.0021 35 1 3.8741 3.0470 -1.2494 36 1 5.6540 3.0795 -1.2510 37 1 4.7865 1.8053 -2.1404 38 1 4.7898 1.8040 2.1380 39 1 5.6558 3.0789 1.2479 40 1 3.8761 3.0463 1.2491 41 1 3.0733 -5.5048 -0.2912 42 1 1.3842 -4.9732 -0.2043 43 1 1.7273 -6.2323 1.7474 44 1 1.7938 -4.5424 2.2705 45 1 5.1402 -7.1130 1.9014 46 1 3.7038 -7.1647 0.8326 47 1 4.6286 -5.6306 -0.6270 48 1 6.1743 -5.8596 0.2432 49 1 4.6325 -3.1760 -0.9179 50 1 4.4172 -2.1742 0.5384 51 1 5.2649 -5.6758 4.1294 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045776731.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:08 Heat of formation + Delta-G solvation = 21.827255 kcal Electronic energy + Delta-G solvation = -33380.491351 eV Core-core repulsion = 29282.591071 eV Total energy + Delta-G solvation = -4097.900279 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.35217 -40.00575 -38.15944 -35.89150 -34.82052 -34.21121 -32.70327 -32.18834 -31.84480 -29.29095 -27.99579 -27.43050 -26.64318 -25.87744 -23.90776 -23.68973 -22.63213 -21.84494 -20.75422 -19.77303 -19.14386 -18.43795 -17.54835 -16.84557 -16.67665 -16.18777 -15.61387 -15.27791 -14.91530 -14.71480 -14.45228 -14.19757 -13.78766 -13.56568 -13.52046 -13.25027 -13.22796 -12.90361 -12.69335 -12.54675 -12.43512 -12.33751 -12.11320 -11.89395 -11.73344 -11.53035 -11.38849 -11.24527 -11.08820 -11.07870 -11.03380 -10.82291 -10.67022 -10.24990 -10.09699 -9.90140 -9.67263 -9.64080 -9.32637 -9.25066 -8.68759 -8.45636 -7.96062 -6.76410 -5.99567 -3.33675 1.25978 2.20276 2.54391 3.38110 3.47552 3.50353 3.65708 3.70201 3.86067 4.53306 4.58025 4.72155 4.80667 4.83626 5.05164 5.18574 5.25043 5.33502 5.36592 5.40928 5.46662 5.48224 5.49416 5.54651 5.61817 5.64486 5.70310 5.73006 5.82843 5.92121 5.95431 5.98956 6.01414 6.06614 6.10704 6.13712 6.16261 6.26215 6.28474 6.47209 6.52006 6.67542 6.74816 6.83904 6.98147 7.14571 7.22080 7.29340 7.64314 7.90141 7.98789 8.53929 8.59230 9.02237 9.79469 10.52002 11.24172 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009336 B = 0.004864 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.313091 B = 5755.604416 C = 6926.600455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.027 3.973 3 O -0.196 6.196 4 C 0.193 3.807 5 C 0.004 3.996 6 C -0.148 4.148 7 C -0.151 4.151 8 N -0.444 5.444 9 C -0.057 4.057 10 C 0.598 3.402 11 O -0.556 6.556 12 N -0.567 5.567 13 C 0.115 3.885 14 C -0.144 4.144 15 C 0.144 3.856 16 H 0.086 0.914 17 C -0.130 4.130 18 C -0.118 4.118 19 C 0.125 3.875 20 H 0.041 0.959 21 C 0.095 3.905 22 N -0.573 5.573 23 C -0.311 4.311 24 H 0.051 0.949 25 C -0.020 4.020 26 N -0.915 5.915 27 Si 1.070 2.930 28 H -0.293 1.293 29 H -0.288 1.288 30 H -0.292 1.292 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.048 0.952 50 H 0.125 0.875 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.145 10.484 -12.765 16.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.029 4.029 3 O -0.084 6.084 4 C -0.016 4.016 5 C -0.016 4.016 6 C -0.206 4.206 7 C -0.209 4.209 8 N -0.173 5.173 9 C -0.177 4.177 10 C 0.385 3.615 11 O -0.437 6.437 12 N -0.297 5.297 13 C -0.008 4.008 14 C -0.184 4.184 15 C 0.037 3.963 16 H 0.103 0.897 17 C -0.169 4.169 18 C -0.157 4.157 19 C 0.018 3.982 20 H 0.059 0.941 21 C -0.028 4.028 22 N -0.296 5.296 23 C -0.439 4.439 24 H 0.068 0.932 25 C -0.223 4.223 26 N -0.555 5.555 27 Si 0.900 3.100 28 H -0.221 1.221 29 H -0.214 1.214 30 H -0.219 1.219 31 H 0.107 0.893 32 H 0.094 0.906 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.142 0.858 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.246 10.167 -11.028 15.166 hybrid contribution -0.349 0.293 -1.574 1.638 sum -2.595 10.460 -12.602 16.581 Atomic orbital electron populations 1.20542 0.82824 1.05019 1.04506 1.23619 0.94944 0.83339 1.01024 1.84246 1.17956 1.36245 1.69933 1.26313 0.83935 0.90526 1.00794 1.19757 0.90055 0.94288 0.97473 1.21881 1.02953 0.99459 0.96278 1.21903 1.02854 0.99563 0.96590 1.70877 1.21303 1.08060 1.17047 1.21530 0.88604 0.95722 1.11871 1.16740 0.85115 0.82724 0.76903 1.90695 1.16633 1.83140 1.53243 1.47957 1.07320 1.05978 1.68430 1.20966 1.00375 0.81798 0.97663 1.21918 1.00405 1.00206 0.95880 1.21264 0.89165 0.88402 0.97485 0.89669 1.22722 0.99116 0.97709 0.97361 1.21867 0.99882 0.95914 0.97992 1.20531 0.96195 0.92950 0.88519 0.94075 1.23280 0.77425 1.03323 0.98769 1.44813 1.54411 1.22994 1.07384 1.19516 1.50137 0.87684 0.86611 0.93164 1.25967 0.97527 1.00068 0.98765 1.70715 1.42599 1.06596 1.35559 0.83429 0.76499 0.74258 0.75768 1.22082 1.21381 1.21894 0.89319 0.90569 0.86936 0.86687 0.91965 0.90898 0.91998 0.91488 0.90871 0.91984 0.90303 0.91188 0.92791 0.92334 0.92169 0.92132 0.92053 0.92056 0.93390 0.85763 0.91750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 9.94 36.00 0.36 -0.55 16 2 C 0.03 0.43 7.44 -35.08 -0.26 0.16 16 3 O -0.20 -2.90 10.73 6.50 0.07 -2.83 16 4 C 0.19 2.84 6.81 -13.08 -0.09 2.75 16 5 C 0.00 0.04 3.39 -91.77 -0.31 -0.27 16 6 C -0.15 -1.20 9.18 37.16 0.34 -0.86 16 7 C -0.15 -1.46 9.18 37.16 0.34 -1.12 16 8 N -0.44 -7.84 7.71 -7.65 -0.06 -7.90 16 9 C -0.06 -1.07 6.72 -83.02 -0.56 -1.62 16 10 C 0.60 12.13 7.67 -12.52 -0.10 12.03 16 11 O -0.56 -11.68 14.24 5.26 0.07 -11.60 16 12 N -0.57 -11.27 2.87 -175.28 -0.50 -11.77 16 13 C 0.11 2.14 5.19 -5.71 -0.03 2.11 16 14 C -0.14 -2.96 5.01 -28.33 -0.14 -3.10 16 15 C 0.14 3.23 3.01 -66.69 -0.20 3.03 16 16 H 0.09 2.21 6.18 -51.93 -0.32 1.88 16 17 C -0.13 -2.40 6.04 -24.98 -0.15 -2.55 16 18 C -0.12 -2.06 5.80 -26.95 -0.16 -2.22 16 19 C 0.13 2.60 2.58 -68.85 -0.18 2.42 16 20 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 21 C 0.10 1.84 5.50 -2.90 -0.02 1.83 16 22 N -0.57 -14.11 2.32 -157.28 -0.37 -14.47 16 23 C -0.31 -8.68 10.14 -15.06 -0.15 -8.83 16 24 H 0.05 1.46 7.89 -52.49 -0.41 1.05 16 25 C -0.02 -0.57 5.28 -17.43 -0.09 -0.67 16 26 N -0.92 -27.24 12.64 55.49 0.70 -26.54 16 27 Si 1.07 25.84 29.96 -169.99 -5.09 20.75 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 29 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 30 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 31 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.11 1.53 6.38 -51.93 -0.33 1.20 16 34 H 0.12 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.33 3.92 -51.93 -0.20 1.13 16 42 H 0.07 1.28 7.16 -51.93 -0.37 0.91 16 43 H 0.05 0.98 8.14 -51.92 -0.42 0.56 16 44 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 46 H 0.06 0.96 7.38 -51.93 -0.38 0.58 16 47 H 0.06 0.95 6.13 -51.93 -0.32 0.63 16 48 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 50 H 0.13 2.62 4.79 -51.94 -0.25 2.37 16 51 H 0.27 8.04 6.58 -40.82 -0.27 7.77 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -32.96 389.14 -8.70 -41.66 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -7.99 Total: 4.32 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -1.39 Total: 2.53 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -0.23 Total: -60.69 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.14 Total: -14.44 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -5.09 Total: 20.75 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.96 -8.70 -41.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045776731.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.487 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds