Wall clock time and date at job start Wed Apr 1 2020 05:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 O 1.34257 * 126.52601 * 2 1 4 4 C 1.34055 * 108.22589 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.37360 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47715 * 300.02932 * 5 4 3 7 7 C 1.53003 * 109.47126 * 60.02939 * 5 4 3 8 8 N 1.29928 * 109.24343 * 359.74982 * 4 3 2 9 9 C 1.36068 * 108.47862 * 0.39924 * 8 4 3 10 10 C 1.47416 * 126.44594 * 179.86262 * 9 8 4 11 11 O 1.21616 * 119.99706 * 185.35099 * 10 9 8 12 12 N 1.34777 * 120.00592 * 5.34899 * 10 9 8 13 13 C 1.44780 * 120.18091 * 174.04416 * 12 10 9 14 14 C 1.51517 * 112.22367 * 264.53544 * 13 12 10 15 15 C 1.51311 * 113.25557 * 285.36882 * 14 13 12 16 16 H 1.08998 * 111.31493 * 185.23442 * 15 14 13 17 17 C 1.54718 * 106.48051 * 307.66320 * 15 14 13 18 18 C 1.54620 * 104.29051 * 88.98950 * 17 15 14 19 19 C 1.50875 * 105.21052 * 11.53887 * 18 17 15 20 20 H 1.08996 * 105.90207 * 122.36634 * 19 18 17 21 21 C 1.49813 * 120.17507 * 354.02908 * 12 10 9 22 22 N 1.48060 * 109.90823 * 8.03614 * 19 18 17 23 23 C 1.36937 * 127.83849 * 155.16618 * 22 19 18 24 24 H 1.07997 * 120.00520 * 36.64299 * 23 22 19 25 25 C 1.38815 * 119.99723 * 216.65245 * 23 22 19 26 26 N 1.31624 * 120.00087 * 17.98612 * 25 23 22 27 27 Si 1.86801 * 119.99637 * 197.99539 * 25 23 22 28 28 H 1.48499 * 109.47453 * 89.99867 * 27 25 23 29 29 H 1.48511 * 109.46777 * 209.99395 * 27 25 23 30 30 H 1.48500 * 109.47321 * 329.99132 * 27 25 23 31 31 H 1.09002 * 109.47694 * 269.95518 * 1 2 3 32 32 H 1.08999 * 109.47446 * 29.95768 * 1 2 3 33 33 H 1.08999 * 109.47316 * 149.95709 * 1 2 3 34 34 H 1.09001 * 109.46592 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.46944 * 59.99883 * 6 5 4 36 36 H 1.08990 * 109.47411 * 180.02562 * 6 5 4 37 37 H 1.08999 * 109.46876 * 300.00303 * 6 5 4 38 38 H 1.09008 * 109.46771 * 59.99622 * 7 5 4 39 39 H 1.08995 * 109.47478 * 179.97438 * 7 5 4 40 40 H 1.08993 * 109.47215 * 299.99930 * 7 5 4 41 41 H 1.09003 * 108.93177 * 143.83415 * 13 12 10 42 42 H 1.09001 * 108.93581 * 25.25063 * 13 12 10 43 43 H 1.09010 * 108.72637 * 164.39331 * 14 13 12 44 44 H 1.09001 * 108.72219 * 46.34551 * 14 13 12 45 45 H 1.08994 * 110.45312 * 207.83881 * 17 15 14 46 46 H 1.08998 * 110.45427 * 330.38895 * 17 15 14 47 47 H 1.08996 * 110.17345 * 252.68633 * 18 17 15 48 48 H 1.08998 * 110.53490 * 130.57783 * 18 17 15 49 49 H 1.08994 * 109.54845 * 270.56803 * 21 12 10 50 50 H 1.08997 * 109.55123 * 30.75974 * 21 12 10 51 51 H 0.96991 * 119.99546 * 6.05132 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5787 0.6579 -0.0006 5 6 4.7929 1.5507 -0.0013 6 6 4.7756 2.4342 -1.2503 7 6 4.7775 2.4336 1.2482 8 7 3.6001 -0.6411 0.0044 9 6 2.3169 -1.0936 -0.0006 10 6 1.8853 -2.5032 -0.0004 11 8 0.7050 -2.7777 -0.1034 12 7 2.7986 -3.4877 0.1140 13 6 2.3718 -4.8650 0.2442 14 6 2.3062 -5.3103 1.6909 15 6 3.6682 -5.5535 2.3035 16 1 3.5826 -5.9593 3.3115 17 6 4.4126 -6.5179 1.3497 18 6 5.1242 -5.5849 0.3427 19 6 4.9992 -4.2005 0.9292 20 1 6.0182 -3.8302 1.0407 21 6 4.2611 -3.1627 0.1067 22 7 4.4367 -4.2810 2.2965 23 6 4.5857 -3.3839 3.3203 24 1 4.6124 -2.3248 3.1107 25 6 4.7024 -3.8359 4.6276 26 7 5.0240 -5.0902 4.8641 27 14 4.4030 -2.6641 6.0511 28 1 2.9674 -2.7011 6.4293 29 1 5.2317 -3.0748 7.2131 30 1 4.7719 -1.2848 5.6429 31 1 -0.3634 -0.0008 1.0276 32 1 -0.3634 0.8903 -0.5132 33 1 -0.3634 -0.8896 -0.5145 34 1 5.6943 0.9379 -0.0021 35 1 3.8741 3.0470 -1.2494 36 1 5.6540 3.0795 -1.2510 37 1 4.7865 1.8053 -2.1404 38 1 4.7898 1.8040 2.1380 39 1 5.6558 3.0789 1.2479 40 1 3.8761 3.0463 1.2491 41 1 3.0733 -5.5048 -0.2912 42 1 1.3842 -4.9732 -0.2043 43 1 1.7273 -6.2323 1.7474 44 1 1.7938 -4.5424 2.2705 45 1 5.1402 -7.1130 1.9014 46 1 3.7038 -7.1647 0.8326 47 1 4.6286 -5.6306 -0.6270 48 1 6.1743 -5.8596 0.2432 49 1 4.6325 -3.1760 -0.9179 50 1 4.4172 -2.1742 0.5384 51 1 5.2649 -5.6758 4.1294 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045776731.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:07 Heat of formation + Delta-G solvation = 1.496358 kcal Electronic energy + Delta-G solvation = -33381.372964 eV Core-core repulsion = 29282.591071 eV Total energy + Delta-G solvation = -4098.781893 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.57172 -41.60128 -39.75500 -36.80678 -36.18574 -35.78700 -34.59993 -33.82539 -32.97331 -31.15136 -29.43914 -28.13488 -28.02328 -27.48197 -25.70607 -25.19721 -23.81157 -23.16539 -22.09101 -21.28593 -20.91996 -19.87646 -19.32155 -18.29071 -18.06720 -17.35917 -17.18016 -16.62538 -16.43684 -16.06837 -15.93361 -15.73879 -15.33033 -15.03696 -14.86619 -14.55391 -14.37103 -14.35758 -14.08581 -13.89383 -13.82533 -13.57586 -13.38215 -13.07836 -13.00261 -12.78595 -12.64036 -12.62000 -12.51990 -12.49422 -12.29676 -12.15893 -12.02133 -12.01630 -11.95962 -11.62118 -11.36895 -11.25590 -11.08140 -10.78719 -10.56545 -9.96932 -9.48671 -8.83521 -8.16136 -5.51259 -0.01154 0.92718 1.39163 1.47670 1.55288 1.72503 1.92149 2.24471 2.55418 2.71692 3.19952 3.38507 3.50966 3.56364 3.84123 3.88556 3.92634 4.02673 4.07013 4.11940 4.14377 4.21978 4.25055 4.36239 4.45017 4.49408 4.50926 4.56429 4.67437 4.73103 4.75721 4.78357 4.83748 4.85735 4.87408 4.92133 4.98337 5.04015 5.05108 5.07401 5.13322 5.25480 5.28129 5.30958 5.34998 5.48408 5.56785 5.72057 5.82320 6.28292 6.39508 6.47622 6.96728 7.06423 7.67167 8.45287 9.02621 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009336 B = 0.004864 C = 0.004041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2998.313091 B = 5755.604416 C = 6926.600455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.036 3.964 3 O -0.191 6.191 4 C 0.199 3.801 5 C 0.001 3.999 6 C -0.140 4.140 7 C -0.147 4.147 8 N -0.474 5.474 9 C -0.099 4.099 10 C 0.589 3.411 11 O -0.572 6.572 12 N -0.574 5.574 13 C 0.117 3.883 14 C -0.132 4.132 15 C 0.136 3.864 16 H 0.044 0.956 17 C -0.120 4.120 18 C -0.110 4.110 19 C 0.126 3.874 20 H 0.022 0.978 21 C 0.103 3.897 22 N -0.594 5.594 23 C -0.312 4.312 24 H 0.030 0.970 25 C -0.068 4.068 26 N -0.939 5.939 27 Si 1.111 2.889 28 H -0.292 1.292 29 H -0.284 1.284 30 H -0.276 1.276 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.115 0.885 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.057 0.943 38 H 0.040 0.960 39 H 0.102 0.898 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.012 0.988 45 H 0.052 0.948 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.077 0.923 49 H 0.073 0.927 50 H 0.107 0.893 51 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.076 11.635 -14.770 18.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.021 4.021 3 O -0.078 6.078 4 C -0.010 4.010 5 C -0.018 4.018 6 C -0.198 4.198 7 C -0.205 4.205 8 N -0.202 5.202 9 C -0.218 4.218 10 C 0.378 3.622 11 O -0.454 6.454 12 N -0.303 5.303 13 C -0.005 4.005 14 C -0.173 4.173 15 C 0.030 3.970 16 H 0.062 0.938 17 C -0.159 4.159 18 C -0.147 4.147 19 C 0.019 3.981 20 H 0.040 0.960 21 C -0.020 4.020 22 N -0.318 5.318 23 C -0.441 4.441 24 H 0.048 0.952 25 C -0.266 4.266 26 N -0.581 5.581 27 Si 0.936 3.064 28 H -0.219 1.219 29 H -0.210 1.210 30 H -0.202 1.202 31 H 0.113 0.887 32 H 0.130 0.870 33 H 0.119 0.881 34 H 0.133 0.867 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.120 0.880 40 H 0.085 0.915 41 H 0.124 0.876 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.031 0.969 45 H 0.071 0.929 46 H 0.114 0.886 47 H 0.111 0.889 48 H 0.095 0.905 49 H 0.091 0.909 50 H 0.125 0.875 51 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.170 11.308 -13.066 17.415 hybrid contribution -0.382 0.007 -0.975 1.047 sum -2.553 11.315 -14.041 18.212 Atomic orbital electron populations 1.20652 0.80604 1.06186 1.05163 1.24160 0.96183 0.82886 0.98881 1.84280 1.18000 1.35697 1.69820 1.27215 0.84802 0.90369 0.98592 1.20066 0.88103 0.94282 0.99360 1.21857 1.04403 0.99119 0.94385 1.21899 1.04526 0.99272 0.94798 1.70803 1.21198 1.09548 1.18683 1.21522 0.89774 0.95622 1.14852 1.17059 0.85051 0.83616 0.76515 1.90663 1.17053 1.83664 1.54058 1.48051 1.07363 1.06447 1.68468 1.21010 1.01526 0.81783 0.96186 1.21810 0.98980 0.99956 0.96538 1.21292 0.90728 0.88290 0.96691 0.93802 1.22643 0.99336 0.97149 0.96726 1.21865 1.01299 0.92931 0.98650 1.20746 0.94986 0.95326 0.86998 0.96025 1.23114 0.77308 1.01958 0.99608 1.44949 1.55516 1.23065 1.08247 1.19533 1.49064 0.87563 0.87971 0.95235 1.27107 0.97615 1.00737 1.01126 1.70808 1.44894 1.07275 1.35100 0.82889 0.76377 0.73551 0.73544 1.21891 1.21028 1.20179 0.88706 0.87024 0.88068 0.86715 0.91690 0.88197 0.92433 0.94069 0.87956 0.91527 0.87638 0.90594 0.90240 0.96894 0.92920 0.88561 0.88907 0.90477 0.90899 0.87523 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.67 9.94 71.23 0.71 -0.96 16 2 C 0.04 1.12 7.44 25.18 0.19 1.31 16 3 O -0.19 -5.45 10.73 0.34 0.00 -5.45 16 4 C 0.20 5.78 6.81 88.39 0.60 6.38 16 5 C 0.00 0.02 3.39 -11.54 -0.04 -0.02 16 6 C -0.14 -1.92 9.18 71.98 0.66 -1.26 16 7 C -0.15 -2.62 9.18 71.98 0.66 -1.96 16 8 N -0.47 -16.91 7.71 -293.04 -2.26 -19.17 16 9 C -0.10 -3.73 6.72 40.41 0.27 -3.45 16 10 C 0.59 24.14 7.67 86.66 0.66 24.81 16 11 O -0.57 -24.22 14.24 -4.08 -0.06 -24.28 16 12 N -0.57 -22.64 2.87 -826.71 -2.37 -25.00 16 13 C 0.12 4.21 5.19 86.21 0.45 4.66 16 14 C -0.13 -5.46 5.01 29.56 0.15 -5.31 16 15 C 0.14 6.22 3.01 44.61 0.13 6.35 16 16 H 0.04 2.37 6.18 -2.39 -0.01 2.35 16 17 C -0.12 -4.21 6.04 31.73 0.19 -4.02 16 18 C -0.11 -3.54 5.80 30.45 0.18 -3.36 16 19 C 0.13 5.18 2.58 43.54 0.11 5.30 16 20 H 0.02 0.96 8.09 -2.39 -0.02 0.94 16 21 C 0.10 3.96 5.50 85.27 0.47 4.43 16 22 N -0.59 -30.01 2.32 -651.52 -1.51 -31.53 16 23 C -0.31 -18.09 10.14 84.03 0.85 -17.23 16 24 H 0.03 1.81 7.89 -2.91 -0.02 1.79 16 25 C -0.07 -3.99 5.28 84.86 0.45 -3.54 16 26 N -0.94 -57.84 12.64 21.65 0.27 -57.57 16 27 Si 1.11 53.59 29.96 68.60 2.05 55.65 16 28 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 29 H -0.28 -13.48 7.11 99.48 0.71 -12.78 16 30 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 31 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.10 2.71 6.38 -2.39 -0.02 2.69 16 34 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.10 0.86 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 38 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.11 3.20 3.92 -2.39 -0.01 3.19 16 42 H 0.08 2.67 7.16 -2.39 -0.02 2.65 16 43 H 0.08 2.81 8.14 -2.38 -0.02 2.80 16 44 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 46 H 0.10 2.70 7.38 -2.39 -0.02 2.68 16 47 H 0.09 2.46 6.13 -2.39 -0.01 2.44 16 48 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 49 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 50 H 0.11 4.59 4.79 -2.42 -0.01 4.58 16 51 H 0.26 16.09 6.58 -92.71 -0.61 15.48 16 Total: -1.00 -76.02 389.14 3.92 -72.10 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 1.10 Total: 23.14 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 6.69 Total: 12.11 kcal Atomic # 7 Polarization: -127.41 SS G_CDS: -5.87 Total: -133.28 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.05 Total: -29.73 kcal Atomic # 14 Polarization: 53.59 SS G_CDS: 2.05 Total: 55.65 kcal Total: -76.02 3.92 -72.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045776731.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.595 kcal (2) G-P(sol) polarization free energy of solvation -76.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds