Wall clock time and date at job start Wed Apr 1 2020 04:51:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30009 * 127.33772 * 2 1 4 4 O 1.20653 * 112.30351 * 180.02562 * 3 2 1 5 5 C 1.33498 * 113.15935 * 359.75447 * 4 3 2 6 6 C 1.50696 * 126.83062 * 180.30739 * 5 4 3 7 7 C 1.37366 * 106.33613 * 0.39083 * 5 4 3 8 8 C 1.47395 * 128.56235 * 179.90963 * 7 5 4 9 9 O 1.21606 * 119.99902 * 96.05895 * 8 7 5 10 10 N 1.34773 * 120.00088 * 276.06693 * 8 7 5 11 11 C 1.44570 * 118.76501 * 355.01552 * 10 8 7 12 12 C 1.54702 * 109.58751 * 270.61658 * 11 10 8 13 13 C 1.47037 * 110.64246 * 288.20085 * 12 11 10 14 14 C 1.53009 * 114.34053 * 62.93763 * 13 12 11 15 15 C 1.50567 * 109.11668 * 276.07747 * 14 13 12 16 16 C 1.53988 * 111.43971 * 214.06625 * 15 14 13 17 17 C 1.54136 * 104.90695 * 98.66267 * 16 15 14 18 18 N 1.47539 * 107.06792 * 358.25651 * 17 16 15 19 19 C 1.36941 * 126.97955 * 205.26440 * 18 17 16 20 20 H 1.07994 * 119.99864 * 179.97438 * 19 18 17 21 21 C 1.38810 * 119.99660 * 359.97332 * 19 18 17 22 22 N 1.31621 * 120.00260 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99521 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47406 * 59.99945 * 23 21 19 25 25 H 1.48507 * 109.46825 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47044 * 299.99284 * 23 21 19 27 27 C 1.48229 * 106.04095 * 25.22555 * 18 17 16 28 28 C 1.47615 * 118.76440 * 175.01846 * 10 8 7 29 29 H 1.08998 * 109.47012 * 275.28382 * 1 2 3 30 30 H 1.08996 * 109.47178 * 35.28820 * 1 2 3 31 31 H 1.09004 * 109.47401 * 155.29217 * 1 2 3 32 32 H 1.09002 * 109.46882 * 265.08085 * 6 5 4 33 33 H 1.09003 * 109.47451 * 25.07890 * 6 5 4 34 34 H 1.08998 * 109.47220 * 145.08418 * 6 5 4 35 35 H 1.08998 * 109.45667 * 150.57640 * 11 10 8 36 36 H 1.09002 * 109.44944 * 30.64288 * 11 10 8 37 37 H 1.08995 * 109.24252 * 167.90278 * 12 11 10 38 38 H 1.08998 * 109.24567 * 48.49339 * 12 11 10 39 39 H 1.08997 * 108.50495 * 301.68152 * 13 12 11 40 40 H 1.08998 * 108.38433 * 184.10759 * 13 12 11 41 41 H 1.08999 * 109.52785 * 156.18530 * 14 13 12 42 42 H 1.09002 * 109.58982 * 36.00586 * 14 13 12 43 43 H 1.09000 * 110.35812 * 339.79956 * 16 15 14 44 44 H 1.09009 * 110.35289 * 217.52168 * 16 15 14 45 45 H 1.08999 * 109.91706 * 117.61159 * 17 16 15 46 46 H 1.08999 * 109.91528 * 238.90169 * 17 16 15 47 47 H 0.97003 * 120.00024 * 179.97438 * 22 21 19 48 48 H 1.08997 * 110.66072 * 79.96011 * 27 18 17 49 49 H 1.09000 * 110.65994 * 203.07327 * 27 18 17 50 50 H 1.08998 * 108.98252 * 17.39956 * 28 10 8 51 51 H 1.09000 * 108.98378 * 258.67450 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4607 0.7207 -0.0005 5 6 3.6494 -0.6009 0.0043 6 6 4.9712 -1.3246 0.0117 7 6 2.3991 -1.1697 -0.0006 8 6 2.0400 -2.5992 -0.0002 9 8 1.7792 -3.1603 1.0467 10 7 2.0009 -3.2846 -1.1600 11 6 2.2085 -2.5684 -2.3986 12 6 0.8517 -2.0513 -2.9324 13 6 0.0372 -3.1641 -3.4425 14 6 -0.3503 -4.1989 -2.3842 15 6 0.7762 -5.1847 -2.2226 16 6 0.2480 -6.5966 -1.9081 17 6 0.2666 -7.3371 -3.2597 18 7 0.7367 -6.3747 -4.2744 19 6 0.4741 -6.4004 -5.6181 20 1 0.8783 -5.6333 -6.2620 21 6 -0.3116 -7.4122 -6.1525 22 7 -0.8038 -8.3473 -5.3678 23 14 -0.6692 -7.4475 -7.9857 24 1 0.6074 -7.5498 -8.7372 25 1 -1.5239 -8.6205 -8.3007 26 1 -1.3753 -6.2009 -8.3763 27 6 1.5502 -5.3739 -3.5438 28 6 1.7475 -4.7382 -1.1179 29 1 -0.3633 0.0946 1.0233 30 1 -0.3633 0.8388 -0.5936 31 1 -0.3634 -0.9336 -0.4296 32 1 5.2514 -1.5796 -1.0104 33 1 5.7353 -0.6814 0.4482 34 1 4.8829 -2.2364 0.6024 35 1 2.6568 -3.2368 -3.1336 36 1 2.8747 -1.7239 -2.2223 37 1 1.0305 -1.3385 -3.7374 38 1 0.3142 -1.5535 -2.1253 39 1 0.5956 -3.6683 -4.2313 40 1 -0.8750 -2.7527 -3.8746 41 1 -1.2515 -4.7241 -2.7009 42 1 -0.5354 -3.6981 -1.4339 43 1 -0.7688 -6.5430 -1.5190 44 1 0.9024 -7.0957 -1.1932 45 1 0.9487 -8.1858 -3.2088 46 1 -0.7378 -7.6791 -3.5096 47 1 -1.3532 -9.0542 -5.7413 48 1 2.5515 -5.7589 -3.3511 49 1 1.5975 -4.4373 -4.0992 50 1 1.3235 -4.9963 -0.1475 51 1 2.6928 -5.2666 -1.2421 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045914540.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:44 Heat of formation + Delta-G solvation = 69.488175 kcal Electronic energy + Delta-G solvation = -33104.269080 eV Core-core repulsion = 29008.435534 eV Total energy + Delta-G solvation = -4095.833547 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.06953 -40.68397 -38.64637 -36.08753 -34.76142 -33.93687 -33.47770 -33.02681 -30.62573 -29.04407 -28.83738 -28.37536 -27.15246 -25.90835 -24.96801 -24.44941 -22.74244 -21.55683 -20.51955 -19.88235 -19.33837 -18.14006 -18.03130 -17.40564 -17.06888 -16.53183 -16.43258 -15.52292 -15.02903 -14.74535 -14.54228 -14.00049 -13.96208 -13.75490 -13.65507 -13.54541 -13.42347 -13.15921 -13.13364 -12.98472 -12.89874 -12.66340 -12.41853 -11.96663 -11.77566 -11.76709 -11.41619 -11.30649 -11.04554 -10.86688 -10.83861 -10.48638 -10.36789 -10.18328 -10.15767 -10.03059 -9.75895 -9.71557 -9.59971 -9.51342 -9.25918 -8.68612 -8.60347 -6.88213 -5.67727 -3.08439 1.09385 1.72528 2.28965 2.62844 3.06466 3.37495 3.42098 3.43472 3.87176 4.02930 4.43039 4.46605 4.67531 4.81033 4.89475 4.98692 5.00845 5.03392 5.10736 5.16665 5.23821 5.25514 5.33255 5.42505 5.44259 5.49873 5.54693 5.59676 5.67480 5.70325 5.75706 5.85031 5.89675 6.02659 6.04624 6.12990 6.24097 6.26479 6.36742 6.40694 6.50131 6.64754 6.67851 6.85289 6.93457 6.98578 7.30801 7.49602 7.56023 7.82881 8.02044 8.03025 8.33294 9.17247 9.78863 10.49106 11.36939 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019243 B = 0.003044 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.697129 B = 9197.258042 C = 9520.349047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.058 3.942 3 N -0.357 5.357 4 O 0.095 5.905 5 C 0.010 3.990 6 C -0.079 4.079 7 C -0.239 4.239 8 C 0.593 3.407 9 O -0.530 6.530 10 N -0.584 5.584 11 C 0.104 3.896 12 C -0.131 4.131 13 C -0.144 4.144 14 C -0.081 4.081 15 C -0.082 4.082 16 C -0.129 4.129 17 C 0.147 3.853 18 N -0.596 5.596 19 C -0.220 4.220 20 H 0.076 0.924 21 C -0.009 4.009 22 N -0.920 5.920 23 Si 0.911 3.089 24 H -0.286 1.286 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.121 3.879 28 C 0.125 3.875 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.053 0.947 41 H 0.069 0.931 42 H 0.048 0.952 43 H 0.059 0.941 44 H 0.053 0.947 45 H 0.009 0.991 46 H 0.104 0.896 47 H 0.252 0.748 48 H 0.018 0.982 49 H 0.070 0.930 50 H 0.088 0.912 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.799 14.893 9.927 19.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.104 4.104 3 N -0.064 5.064 4 O 0.034 5.966 5 C -0.054 4.054 6 C -0.136 4.136 7 C -0.246 4.246 8 C 0.378 3.622 9 O -0.407 6.407 10 N -0.315 5.315 11 C -0.019 4.019 12 C -0.169 4.169 13 C -0.180 4.180 14 C -0.119 4.119 15 C -0.084 4.084 16 C -0.169 4.169 17 C 0.022 3.978 18 N -0.320 5.320 19 C -0.348 4.348 20 H 0.094 0.906 21 C -0.205 4.205 22 N -0.569 5.569 23 Si 0.741 3.259 24 H -0.213 1.213 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.005 4.005 28 C 0.003 3.997 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.027 0.973 46 H 0.122 0.878 47 H 0.063 0.937 48 H 0.035 0.965 49 H 0.088 0.912 50 H 0.107 0.893 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.354 15.719 10.249 20.155 hybrid contribution -0.288 -0.837 -0.968 1.312 sum 7.066 14.882 9.281 18.908 Atomic orbital electron populations 1.20282 0.85267 1.04255 1.03878 1.24693 0.98506 0.86435 1.00764 1.73597 0.89124 1.23321 1.20344 1.84522 1.21510 1.22550 1.68055 1.24581 0.97348 0.83781 0.99672 1.20468 0.89014 0.99396 1.04735 1.21915 0.92817 0.95485 1.14383 1.17027 0.77360 0.83720 0.84051 1.90805 1.48761 1.69588 1.31574 1.47643 1.69098 1.09107 1.05609 1.21710 0.97498 0.96507 0.86221 1.21258 0.96180 0.98675 1.00780 1.20851 1.00320 0.96234 1.00606 1.20818 0.97951 0.95507 0.97576 1.21447 0.95549 0.95840 0.95598 1.22729 0.99652 0.94183 1.00290 1.21680 1.02364 0.90019 0.83725 1.44757 1.56684 1.27155 1.03420 1.18966 1.25825 1.08371 0.81635 0.90598 1.24756 1.00504 0.97352 0.97899 1.69768 1.38792 1.15377 1.32914 0.86216 0.77825 0.77003 0.84815 1.21286 1.21633 1.21210 1.22389 0.92954 0.94093 0.91056 1.22152 0.99375 0.77297 1.00837 0.89650 0.89855 0.89645 0.88623 0.89140 0.88761 0.89204 0.91207 0.91288 0.92357 0.88557 0.92837 0.91262 0.93329 0.92245 0.92873 0.97320 0.87850 0.93711 0.96453 0.91205 0.89343 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.11 36.01 0.36 -0.41 16 2 C 0.06 0.69 7.55 -79.77 -0.60 0.09 16 3 N -0.36 -4.41 12.01 34.78 0.42 -3.99 16 4 O 0.10 1.06 11.06 18.64 0.21 1.27 16 5 C 0.01 0.10 7.01 -34.63 -0.24 -0.15 16 6 C -0.08 -0.50 10.33 36.00 0.37 -0.13 16 7 C -0.24 -2.89 4.43 -102.89 -0.46 -3.34 16 8 C 0.59 8.20 7.44 -12.54 -0.09 8.10 16 9 O -0.53 -9.10 16.39 5.27 0.09 -9.01 16 10 N -0.58 -7.48 2.30 -174.06 -0.40 -7.88 16 11 C 0.10 1.18 5.19 -4.18 -0.02 1.16 16 12 C -0.13 -1.53 5.71 -28.70 -0.16 -1.69 16 13 C -0.14 -2.07 5.01 -29.59 -0.15 -2.22 16 14 C -0.08 -1.29 4.88 -27.94 -0.14 -1.42 16 15 C -0.08 -1.33 0.56 -154.16 -0.09 -1.42 16 16 C -0.13 -2.35 5.91 -25.62 -0.15 -2.50 16 17 C 0.15 3.42 6.01 -2.88 -0.02 3.41 16 18 N -0.60 -14.14 3.36 -169.51 -0.57 -14.71 16 19 C -0.22 -5.76 10.37 -15.06 -0.16 -5.92 16 20 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 22 N -0.92 -26.12 10.21 55.49 0.57 -25.56 16 23 Si 0.91 21.43 29.55 -169.99 -5.02 16.41 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.12 2.24 4.55 -2.42 -0.01 2.23 16 28 C 0.12 1.78 4.82 -3.05 -0.01 1.77 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.86 6.57 -51.93 -0.34 0.52 16 32 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 1.03 5.81 -51.93 -0.30 0.73 16 36 H 0.07 0.69 6.25 -51.93 -0.32 0.37 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.68 6.06 -51.93 -0.31 0.36 16 39 H 0.10 1.59 4.44 -51.93 -0.23 1.36 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.26 7.69 -51.93 -0.40 0.86 16 42 H 0.05 0.74 7.59 -51.93 -0.39 0.35 16 43 H 0.06 1.05 7.71 -51.93 -0.40 0.65 16 44 H 0.05 0.88 7.78 -51.92 -0.40 0.48 16 45 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.10 2.74 5.87 -51.93 -0.30 2.43 16 47 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 48 H 0.02 0.33 7.65 -51.93 -0.40 -0.07 16 49 H 0.07 1.22 3.47 -51.93 -0.18 1.04 16 50 H 0.09 1.36 6.83 -51.93 -0.35 1.00 16 51 H 0.07 0.91 7.63 -51.93 -0.40 0.51 16 LS Contribution 384.19 15.07 5.79 5.79 Total: -1.00 -31.15 384.19 -8.26 -39.41 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.67 Total: 1.09 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -1.66 Total: -2.81 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 0.02 Total: -52.13 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.29 Total: -7.75 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.15 -8.26 -39.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045914540.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.900 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds