Wall clock time and date at job start Wed Apr 1 2020 04:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30009 * 127.33772 * 2 1 4 4 O 1.20653 * 112.30351 * 180.02562 * 3 2 1 5 5 C 1.33498 * 113.15935 * 359.75447 * 4 3 2 6 6 C 1.50696 * 126.83062 * 180.30739 * 5 4 3 7 7 C 1.37366 * 106.33613 * 0.39083 * 5 4 3 8 8 C 1.47395 * 128.56235 * 179.90963 * 7 5 4 9 9 O 1.21606 * 119.99902 * 96.05895 * 8 7 5 10 10 N 1.34773 * 120.00088 * 276.06693 * 8 7 5 11 11 C 1.44570 * 118.76501 * 355.01552 * 10 8 7 12 12 C 1.54702 * 109.58751 * 270.61658 * 11 10 8 13 13 C 1.47037 * 110.64246 * 288.20085 * 12 11 10 14 14 C 1.53009 * 114.34053 * 62.93763 * 13 12 11 15 15 C 1.50567 * 109.11668 * 276.07747 * 14 13 12 16 16 C 1.53988 * 111.43971 * 214.06625 * 15 14 13 17 17 C 1.54136 * 104.90695 * 98.66267 * 16 15 14 18 18 N 1.47539 * 107.06792 * 358.25651 * 17 16 15 19 19 C 1.36941 * 126.97955 * 205.26440 * 18 17 16 20 20 H 1.07994 * 119.99864 * 179.97438 * 19 18 17 21 21 C 1.38810 * 119.99660 * 359.97332 * 19 18 17 22 22 N 1.31621 * 120.00260 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99521 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47406 * 59.99945 * 23 21 19 25 25 H 1.48507 * 109.46825 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47044 * 299.99284 * 23 21 19 27 27 C 1.48229 * 106.04095 * 25.22555 * 18 17 16 28 28 C 1.47615 * 118.76440 * 175.01846 * 10 8 7 29 29 H 1.08998 * 109.47012 * 275.28382 * 1 2 3 30 30 H 1.08996 * 109.47178 * 35.28820 * 1 2 3 31 31 H 1.09004 * 109.47401 * 155.29217 * 1 2 3 32 32 H 1.09002 * 109.46882 * 265.08085 * 6 5 4 33 33 H 1.09003 * 109.47451 * 25.07890 * 6 5 4 34 34 H 1.08998 * 109.47220 * 145.08418 * 6 5 4 35 35 H 1.08998 * 109.45667 * 150.57640 * 11 10 8 36 36 H 1.09002 * 109.44944 * 30.64288 * 11 10 8 37 37 H 1.08995 * 109.24252 * 167.90278 * 12 11 10 38 38 H 1.08998 * 109.24567 * 48.49339 * 12 11 10 39 39 H 1.08997 * 108.50495 * 301.68152 * 13 12 11 40 40 H 1.08998 * 108.38433 * 184.10759 * 13 12 11 41 41 H 1.08999 * 109.52785 * 156.18530 * 14 13 12 42 42 H 1.09002 * 109.58982 * 36.00586 * 14 13 12 43 43 H 1.09000 * 110.35812 * 339.79956 * 16 15 14 44 44 H 1.09009 * 110.35289 * 217.52168 * 16 15 14 45 45 H 1.08999 * 109.91706 * 117.61159 * 17 16 15 46 46 H 1.08999 * 109.91528 * 238.90169 * 17 16 15 47 47 H 0.97003 * 120.00024 * 179.97438 * 22 21 19 48 48 H 1.08997 * 110.66072 * 79.96011 * 27 18 17 49 49 H 1.09000 * 110.65994 * 203.07327 * 27 18 17 50 50 H 1.08998 * 108.98252 * 17.39956 * 28 10 8 51 51 H 1.09000 * 108.98378 * 258.67450 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4607 0.7207 -0.0005 5 6 3.6494 -0.6009 0.0043 6 6 4.9712 -1.3246 0.0117 7 6 2.3991 -1.1697 -0.0006 8 6 2.0400 -2.5992 -0.0002 9 8 1.7792 -3.1603 1.0467 10 7 2.0009 -3.2846 -1.1600 11 6 2.2085 -2.5684 -2.3986 12 6 0.8517 -2.0513 -2.9324 13 6 0.0372 -3.1641 -3.4425 14 6 -0.3503 -4.1989 -2.3842 15 6 0.7762 -5.1847 -2.2226 16 6 0.2480 -6.5966 -1.9081 17 6 0.2666 -7.3371 -3.2597 18 7 0.7367 -6.3747 -4.2744 19 6 0.4741 -6.4004 -5.6181 20 1 0.8783 -5.6333 -6.2620 21 6 -0.3116 -7.4122 -6.1525 22 7 -0.8038 -8.3473 -5.3678 23 14 -0.6692 -7.4475 -7.9857 24 1 0.6074 -7.5498 -8.7372 25 1 -1.5239 -8.6205 -8.3007 26 1 -1.3753 -6.2009 -8.3763 27 6 1.5502 -5.3739 -3.5438 28 6 1.7475 -4.7382 -1.1179 29 1 -0.3633 0.0946 1.0233 30 1 -0.3633 0.8388 -0.5936 31 1 -0.3634 -0.9336 -0.4296 32 1 5.2514 -1.5796 -1.0104 33 1 5.7353 -0.6814 0.4482 34 1 4.8829 -2.2364 0.6024 35 1 2.6568 -3.2368 -3.1336 36 1 2.8747 -1.7239 -2.2223 37 1 1.0305 -1.3385 -3.7374 38 1 0.3142 -1.5535 -2.1253 39 1 0.5956 -3.6683 -4.2313 40 1 -0.8750 -2.7527 -3.8746 41 1 -1.2515 -4.7241 -2.7009 42 1 -0.5354 -3.6981 -1.4339 43 1 -0.7688 -6.5430 -1.5190 44 1 0.9024 -7.0957 -1.1932 45 1 0.9487 -8.1858 -3.2088 46 1 -0.7378 -7.6791 -3.5096 47 1 -1.3532 -9.0542 -5.7413 48 1 2.5515 -5.7589 -3.3511 49 1 1.5975 -4.4373 -4.0992 50 1 1.3235 -4.9963 -0.1475 51 1 2.6928 -5.2666 -1.2421 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045914540.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:43 Heat of formation + Delta-G solvation = 52.570622 kcal Electronic energy + Delta-G solvation = -33105.002680 eV Core-core repulsion = 29008.435534 eV Total energy + Delta-G solvation = -4096.567147 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.91871 -41.87971 -39.95321 -37.42828 -35.67416 -35.03642 -34.56639 -34.42487 -32.34482 -30.42479 -29.84272 -29.13573 -28.37663 -27.34120 -26.37641 -25.55656 -24.11796 -22.84832 -21.67143 -21.21501 -20.30974 -19.45801 -18.94130 -18.76663 -18.42251 -17.70228 -17.48665 -16.75220 -16.60730 -16.20455 -15.66133 -15.36413 -15.14112 -14.82676 -14.63205 -14.57057 -14.42414 -14.33372 -14.12949 -13.91391 -13.80833 -13.59929 -13.50382 -13.38016 -13.27324 -13.07650 -12.91039 -12.67327 -12.54355 -12.21310 -12.09332 -12.03358 -11.96017 -11.74627 -11.48727 -11.38689 -11.18018 -11.11175 -10.91169 -10.68111 -10.60609 -10.33967 -9.70043 -8.83989 -7.71743 -5.13382 0.29971 0.85561 1.25667 1.49139 1.51160 1.57090 1.75568 2.14035 2.53466 3.03845 3.26065 3.39362 3.45821 3.64520 3.75952 3.84666 3.91079 3.96231 4.04729 4.06150 4.23024 4.26931 4.39903 4.48808 4.52638 4.53392 4.58705 4.62004 4.62742 4.65043 4.66801 4.76750 4.81781 4.85042 4.88828 4.93757 5.03100 5.06497 5.10220 5.15741 5.22020 5.28308 5.38397 5.41921 5.53422 5.63306 5.66412 5.70505 5.86823 6.27297 6.36072 6.97385 7.14114 7.20668 7.82738 8.53215 9.31595 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019243 B = 0.003044 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.697129 B = 9197.258042 C = 9520.349047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.054 3.946 3 N -0.374 5.374 4 O 0.094 5.906 5 C 0.031 3.969 6 C -0.081 4.081 7 C -0.267 4.267 8 C 0.601 3.399 9 O -0.568 6.568 10 N -0.578 5.578 11 C 0.104 3.896 12 C -0.126 4.126 13 C -0.134 4.134 14 C -0.077 4.077 15 C -0.068 4.068 16 C -0.120 4.120 17 C 0.152 3.848 18 N -0.615 5.615 19 C -0.222 4.222 20 H 0.086 0.914 21 C -0.069 4.069 22 N -0.951 5.951 23 Si 0.972 3.028 24 H -0.279 1.279 25 H -0.301 1.301 26 H -0.277 1.277 27 C 0.121 3.879 28 C 0.134 3.866 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.062 0.938 39 H 0.078 0.922 40 H 0.051 0.949 41 H 0.039 0.961 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.072 0.928 45 H -0.019 1.019 46 H 0.067 0.933 47 H 0.243 0.757 48 H 0.024 0.976 49 H 0.088 0.912 50 H 0.081 0.919 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.620 17.339 9.920 22.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 N -0.083 5.083 4 O 0.034 5.966 5 C -0.033 4.033 6 C -0.138 4.138 7 C -0.274 4.274 8 C 0.388 3.612 9 O -0.448 6.448 10 N -0.307 5.307 11 C -0.019 4.019 12 C -0.165 4.165 13 C -0.170 4.170 14 C -0.115 4.115 15 C -0.071 4.071 16 C -0.159 4.159 17 C 0.027 3.973 18 N -0.339 5.339 19 C -0.351 4.351 20 H 0.104 0.896 21 C -0.262 4.262 22 N -0.602 5.602 23 Si 0.801 3.199 24 H -0.205 1.205 25 H -0.227 1.227 26 H -0.203 1.203 27 C -0.003 4.003 28 C 0.012 3.988 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.096 0.904 40 H 0.069 0.931 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.091 0.909 45 H -0.001 1.001 46 H 0.085 0.915 47 H 0.053 0.947 48 H 0.042 0.958 49 H 0.105 0.895 50 H 0.100 0.900 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 9.211 18.214 10.234 22.833 hybrid contribution -0.808 -1.576 -0.936 2.003 sum 8.403 16.638 9.298 20.830 Atomic orbital electron populations 1.20351 0.84316 1.04596 1.04491 1.24987 0.99293 0.86284 1.00255 1.73596 0.89554 1.23715 1.21396 1.84511 1.21116 1.23017 1.67930 1.25170 0.98059 0.83255 0.96830 1.20714 0.87694 0.99233 1.06185 1.21764 0.93913 0.94497 1.17224 1.17144 0.76382 0.84204 0.83446 1.90788 1.50509 1.70558 1.32900 1.47605 1.68540 1.08444 1.06155 1.21825 0.97606 0.97087 0.85359 1.21217 0.95896 0.97825 1.01524 1.20745 1.00478 0.96434 0.99375 1.20757 0.96581 0.95686 0.98438 1.21270 0.95768 0.94812 0.95217 1.22590 1.00572 0.95076 0.97706 1.21435 0.99433 0.90145 0.86332 1.44999 1.57501 1.28306 1.03131 1.19383 1.24660 1.07957 0.83092 0.89590 1.25535 1.01295 0.97618 1.01714 1.70031 1.39888 1.16027 1.34239 0.85237 0.77553 0.76649 0.80429 1.20528 1.22717 1.20297 1.22595 0.92541 0.93548 0.91614 1.21919 0.99111 0.78547 0.99237 0.89126 0.88468 0.90063 0.86516 0.86798 0.89083 0.89014 0.89091 0.89300 0.91961 0.90445 0.93054 0.94204 0.92518 0.92058 0.90921 1.00083 0.91539 0.94721 0.95820 0.89504 0.90045 0.90368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 10.11 71.24 0.72 -0.71 16 2 C 0.05 1.17 7.55 45.16 0.34 1.51 16 3 N -0.37 -8.44 12.01 -44.79 -0.54 -8.98 16 4 O 0.09 1.85 11.06 76.95 0.85 2.70 16 5 C 0.03 0.52 7.01 25.48 0.18 0.70 16 6 C -0.08 -0.74 10.33 71.23 0.74 -0.01 16 7 C -0.27 -5.82 4.43 -18.74 -0.08 -5.90 16 8 C 0.60 15.40 7.44 86.65 0.64 16.04 16 9 O -0.57 -18.79 16.39 -4.05 -0.07 -18.85 16 10 N -0.58 -13.39 2.30 -822.85 -1.89 -15.27 16 11 C 0.10 2.01 5.19 87.32 0.45 2.47 16 12 C -0.13 -2.60 5.71 29.32 0.17 -2.43 16 13 C -0.13 -3.64 5.01 28.74 0.14 -3.50 16 14 C -0.08 -2.39 4.88 29.81 0.15 -2.24 16 15 C -0.07 -2.16 0.56 -51.96 -0.03 -2.19 16 16 C -0.12 -4.38 5.91 31.31 0.18 -4.20 16 17 C 0.15 7.32 6.01 86.57 0.52 7.84 16 18 N -0.62 -29.46 3.36 -690.22 -2.32 -31.77 16 19 C -0.22 -11.70 10.37 84.03 0.87 -10.83 16 20 H 0.09 4.25 7.83 -2.91 -0.02 4.23 16 21 C -0.07 -3.82 5.49 84.86 0.47 -3.36 16 22 N -0.95 -56.14 10.21 21.65 0.22 -55.91 16 23 Si 0.97 44.60 29.55 68.60 2.03 46.62 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 26 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 27 C 0.12 4.34 4.55 86.48 0.39 4.74 16 28 C 0.13 3.56 4.82 86.41 0.42 3.98 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.08 1.50 6.57 -2.38 -0.02 1.49 16 32 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.09 1.79 5.81 -2.39 -0.01 1.77 16 36 H 0.09 1.44 6.25 -2.39 -0.01 1.43 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.28 6.06 -2.39 -0.01 1.26 16 39 H 0.08 2.43 4.44 -2.39 -0.01 2.42 16 40 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.04 1.46 7.69 -2.39 -0.02 1.45 16 42 H 0.06 1.67 7.59 -2.39 -0.02 1.65 16 43 H 0.06 2.20 7.71 -2.39 -0.02 2.18 16 44 H 0.07 2.36 7.78 -2.38 -0.02 2.34 16 45 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 46 H 0.07 3.71 5.87 -2.39 -0.01 3.70 16 47 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 48 H 0.02 0.85 7.65 -2.39 -0.02 0.83 16 49 H 0.09 2.86 3.47 -2.39 -0.01 2.85 16 50 H 0.08 2.37 6.83 -2.39 -0.02 2.35 16 51 H 0.08 1.94 7.63 -2.39 -0.02 1.92 16 Total: -1.00 -69.48 384.19 5.51 -63.97 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: 0.95 Total: 15.58 kcal Atomic # 6 Polarization: -4.35 SS G_CDS: 6.27 Total: 1.92 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -4.52 Total: -111.94 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: 0.78 Total: -16.15 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -69.48 5.51 -63.97 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045914540.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.543 kcal (2) G-P(sol) polarization free energy of solvation -69.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds