Wall clock time and date at job start Wed Apr 1 2020 04:24:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35124 * 125.61529 * 2 1 4 4 C 1.40363 * 107.11696 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.64867 * 179.97438 * 4 3 2 6 6 C 1.36543 * 106.70710 * 0.02562 * 4 3 2 7 7 C 1.46655 * 125.98842 * 179.97438 * 6 4 3 8 8 O 1.21694 * 120.00143 * 7.92970 * 7 6 4 9 9 N 1.34773 * 120.00082 * 187.93136 * 7 6 4 10 10 C 1.47087 * 120.87984 * 6.75451 * 9 7 6 11 11 C 1.53697 * 108.27310 * 128.75442 * 10 9 7 12 12 N 1.46905 * 109.25611 * 54.08421 * 11 10 9 13 13 C 1.46902 * 110.99588 * 172.60545 * 12 11 10 14 14 H 1.08993 * 110.88957 * 71.87535 * 13 12 11 15 15 C 1.55158 * 111.00781 * 307.94948 * 13 12 11 16 16 C 1.54324 * 102.94538 * 206.42839 * 15 13 12 17 17 N 1.47025 * 107.27025 * 22.19187 * 16 15 13 18 18 C 1.36932 * 125.64638 * 181.09904 * 17 16 15 19 19 H 1.07998 * 119.99828 * 179.97438 * 18 17 16 20 20 C 1.38812 * 120.00158 * 359.95809 * 18 17 16 21 21 N 1.31614 * 120.00049 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99937 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47612 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47175 * 119.99683 * 22 20 18 25 25 H 1.48505 * 109.47102 * 239.99368 * 22 20 18 26 26 C 1.47423 * 108.70244 * 1.05952 * 17 16 15 27 27 C 1.46898 * 111.27039 * 296.74987 * 12 11 10 28 28 C 1.47080 * 120.88287 * 187.03571 * 9 7 6 29 29 O 1.33933 * 125.61781 * 179.69925 * 2 1 3 30 30 H 1.08995 * 109.47099 * 89.99789 * 1 2 3 31 31 H 1.08997 * 109.47586 * 329.99767 * 1 2 3 32 32 H 1.09001 * 109.46982 * 209.99638 * 1 2 3 33 33 H 1.08008 * 126.44563 * 359.96854 * 3 2 1 34 34 H 1.08995 * 109.46937 * 90.02538 * 5 4 3 35 35 H 1.08997 * 109.47329 * 210.03203 * 5 4 3 36 36 H 1.08998 * 109.47089 * 330.03147 * 5 4 3 37 37 H 1.08997 * 109.62667 * 248.52136 * 10 9 7 38 38 H 1.08997 * 109.62556 * 9.10593 * 10 9 7 39 39 H 1.08994 * 109.64786 * 294.08011 * 11 10 9 40 40 H 1.09001 * 109.42143 * 173.94541 * 11 10 9 41 41 H 1.09004 * 110.71760 * 324.79296 * 15 13 12 42 42 H 1.08999 * 110.71904 * 88.05823 * 15 13 12 43 43 H 1.09001 * 109.87884 * 262.77416 * 16 15 13 44 44 H 1.09002 * 110.00788 * 141.68144 * 16 15 13 45 45 H 0.97004 * 120.00371 * 180.02562 * 21 20 18 46 46 H 1.09001 * 110.36974 * 217.03410 * 26 17 16 47 47 H 1.09002 * 110.36442 * 94.71071 * 26 17 16 48 48 H 1.08997 * 109.49213 * 303.15095 * 27 12 11 49 49 H 1.08997 * 109.49365 * 183.06259 * 27 12 11 50 50 H 1.09003 * 109.63191 * 350.89454 * 28 9 7 51 51 H 1.08998 * 109.63381 * 111.28111 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 0.0006 5 6 4.8617 1.5144 0.0003 6 6 3.5823 -0.7116 0.0004 7 6 4.7414 -1.6101 0.0003 8 8 5.8618 -1.1579 0.1458 9 7 4.5659 -2.9365 -0.1610 10 6 3.2417 -3.4889 -0.4850 11 6 3.3889 -4.4076 -1.7083 12 7 4.4301 -5.4085 -1.4401 13 6 4.4826 -6.4133 -2.5104 14 1 4.9044 -5.9890 -3.4215 15 6 3.0782 -7.0173 -2.7757 16 6 3.4045 -8.4146 -3.3437 17 7 4.7610 -8.7621 -2.8956 18 6 5.4326 -9.9148 -3.2041 19 1 6.4305 -10.0766 -2.8242 20 6 4.8307 -10.8757 -4.0050 21 7 3.6142 -10.6790 -4.4673 22 14 5.7466 -12.4485 -4.4253 23 1 7.0869 -12.4267 -3.7864 24 1 4.9786 -13.6171 -3.9256 25 1 5.9025 -12.5519 -5.8985 26 6 5.2787 -7.6635 -2.0599 27 6 5.7415 -4.7750 -1.2481 28 6 5.6920 -3.8708 -0.0118 29 8 2.2870 -1.0888 0.0057 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 0.8899 0.5138 32 1 -0.3633 -0.8900 0.5138 33 1 1.9612 2.1260 -0.0005 34 1 5.1599 1.7223 1.0278 35 1 5.6684 0.9916 -0.5135 36 1 4.6512 2.4522 -0.5137 37 1 2.8662 -4.0611 0.3634 38 1 2.5528 -2.6765 -0.7162 39 1 3.6692 -3.8156 -2.5795 40 1 2.4412 -4.9110 -1.8997 41 1 2.5127 -7.1007 -1.8475 42 1 2.5339 -6.4208 -3.5078 43 1 3.3689 -8.3896 -4.4328 44 1 2.6905 -9.1467 -2.9663 45 1 3.1934 -11.3506 -5.0266 46 1 6.3442 -7.5198 -2.2395 47 1 5.0954 -7.8703 -1.0054 48 1 5.9890 -4.1780 -2.1257 49 1 6.4999 -5.5448 -1.1055 50 1 6.6238 -3.3111 0.0699 51 1 5.5492 -4.4766 0.8830 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046016185.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:17 Heat of formation + Delta-G solvation = 27.805407 kcal Electronic energy + Delta-G solvation = -31222.871496 eV Core-core repulsion = 27125.230449 eV Total energy + Delta-G solvation = -4097.641047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.10125 -40.13669 -38.55821 -36.73730 -34.71092 -34.01028 -32.86474 -31.98412 -31.34873 -29.23324 -28.51981 -28.28333 -27.13358 -25.82633 -24.22347 -23.61056 -22.27433 -21.76782 -20.47466 -19.90876 -19.77109 -19.34292 -17.72231 -16.96046 -16.86246 -16.43246 -15.71439 -15.50073 -15.24751 -14.83049 -14.54008 -14.45231 -14.28681 -14.09589 -13.88424 -13.54949 -13.47160 -13.28364 -13.17813 -13.04772 -12.81343 -12.66798 -12.40382 -12.23041 -12.06395 -11.91853 -11.81611 -11.49410 -11.31939 -11.16865 -10.86026 -10.81158 -10.27394 -10.15064 -10.08388 -10.00575 -9.93037 -9.89958 -9.66034 -9.02115 -8.64332 -8.58941 -8.14639 -6.81017 -5.69935 -3.03126 0.76965 1.99420 2.26599 2.79561 2.94880 3.40694 3.46188 3.48677 3.95792 4.12952 4.36966 4.47205 4.52992 4.78886 4.85825 4.91984 4.99801 5.03364 5.07279 5.15017 5.19005 5.28141 5.30598 5.37124 5.45970 5.46465 5.48464 5.54973 5.60737 5.70171 5.70443 5.79218 5.82314 5.85500 5.89473 5.90993 6.00061 6.14997 6.24631 6.30262 6.48691 6.52252 6.60279 6.65652 6.77484 7.13414 7.18699 7.38514 7.57721 7.63795 7.83352 7.83966 8.27525 9.23635 9.84095 10.50113 11.41963 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023428 B = 0.002152 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.867290 B =13010.049046 C =13953.986505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.016 3.984 3 C -0.224 4.224 4 C -0.083 4.083 5 C -0.092 4.092 6 C -0.086 4.086 7 C 0.603 3.397 8 O -0.524 6.524 9 N -0.603 5.603 10 C 0.104 3.896 11 C 0.042 3.958 12 N -0.526 5.526 13 C 0.067 3.933 14 H 0.047 0.953 15 C -0.136 4.136 16 C 0.179 3.821 17 N -0.606 5.606 18 C -0.225 4.225 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.923 5.923 22 Si 0.912 3.088 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.150 3.850 27 C 0.042 3.958 28 C 0.119 3.881 29 O -0.155 6.155 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.154 0.846 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.034 0.966 40 H 0.094 0.906 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.251 0.749 46 H 0.033 0.967 47 H 0.031 0.969 48 H 0.036 0.964 49 H 0.093 0.907 50 H 0.096 0.904 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.909 25.026 9.750 27.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.035 4.035 3 C -0.243 4.243 4 C -0.086 4.086 5 C -0.149 4.149 6 C -0.137 4.137 7 C 0.391 3.609 8 O -0.403 6.403 9 N -0.336 5.336 10 C -0.018 4.018 11 C -0.087 4.087 12 N -0.252 5.252 13 C -0.041 4.041 14 H 0.065 0.935 15 C -0.175 4.175 16 C 0.054 3.946 17 N -0.333 5.333 18 C -0.353 4.353 19 H 0.096 0.904 20 C -0.206 4.206 21 N -0.571 5.571 22 Si 0.743 3.257 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.023 3.977 27 C -0.087 4.087 28 C -0.003 4.003 29 O -0.053 6.053 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.172 0.828 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.120 0.880 39 H 0.053 0.947 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.051 0.949 47 H 0.048 0.952 48 H 0.054 0.946 49 H 0.111 0.889 50 H 0.114 0.886 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -5.539 24.486 10.137 27.074 hybrid contribution 0.474 -0.344 -1.095 1.241 sum -5.065 24.143 9.042 26.273 Atomic orbital electron populations 1.20432 0.84551 1.04549 1.04077 1.22912 0.94435 0.84544 1.01657 1.21453 0.91809 0.99768 1.11229 1.20608 0.96386 0.92158 0.99441 1.20390 0.93751 0.97825 1.02905 1.21769 0.81896 0.93982 1.16017 1.16646 0.86031 0.81042 0.77144 1.90831 1.22639 1.75333 1.51525 1.48087 1.11313 1.05342 1.68809 1.22374 0.83466 0.97676 0.98320 1.22549 0.97393 0.93162 0.95612 1.61971 1.04507 1.13641 1.45034 1.22899 0.98475 0.91799 0.90958 0.93482 1.22971 0.94931 0.99212 1.00365 1.21122 0.86637 0.89131 0.97679 1.44431 1.14148 1.17159 1.57575 1.19102 0.97855 0.93002 1.25352 0.90388 1.24805 0.96777 0.98822 1.00221 1.69972 1.13422 1.34792 1.38892 0.86038 0.78702 0.83222 0.77775 1.20504 1.21760 1.21822 1.21447 0.95076 0.86435 0.94725 1.22470 0.92379 0.97184 0.96663 1.21825 0.89557 0.90383 0.98562 1.84193 1.16008 1.33820 1.71232 0.89455 0.89031 0.89992 0.82834 0.90702 0.89807 0.91523 0.90170 0.88024 0.94742 0.88814 0.91465 0.92651 0.93758 0.93772 0.93850 0.94865 0.95175 0.94557 0.88874 0.88596 0.90198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.41 36.01 0.37 0.03 16 2 C 0.02 0.14 7.31 -35.42 -0.26 -0.12 16 3 C -0.22 -1.91 10.73 -39.89 -0.43 -2.34 16 4 C -0.08 -0.89 6.20 -104.43 -0.65 -1.54 16 5 C -0.09 -0.87 9.74 36.01 0.35 -0.52 16 6 C -0.09 -1.03 6.76 -36.80 -0.25 -1.28 16 7 C 0.60 8.13 7.65 -12.87 -0.10 8.04 16 8 O -0.52 -8.07 14.31 5.19 0.07 -7.99 16 9 N -0.60 -7.53 3.00 -173.72 -0.52 -8.06 16 10 C 0.10 1.17 6.26 -3.36 -0.02 1.14 16 11 C 0.04 0.52 5.40 -3.46 -0.02 0.50 16 12 N -0.53 -7.64 4.53 -223.48 -1.01 -8.65 16 13 C 0.07 1.18 2.73 -65.56 -0.18 1.01 16 14 H 0.05 0.87 8.13 -51.93 -0.42 0.45 16 15 C -0.14 -2.51 4.93 -24.90 -0.12 -2.63 16 16 C 0.18 4.36 5.38 -3.06 -0.02 4.34 16 17 N -0.61 -15.62 3.39 -170.07 -0.58 -16.20 16 18 C -0.22 -6.32 10.28 -15.06 -0.15 -6.47 16 19 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 20 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 21 N -0.92 -27.25 10.31 55.49 0.57 -26.68 16 22 Si 0.91 22.25 29.55 -169.99 -5.02 17.22 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 C 0.15 3.12 6.10 -2.53 -0.02 3.11 16 27 C 0.04 0.55 5.53 -3.70 -0.02 0.53 16 28 C 0.12 1.43 6.61 -3.60 -0.02 1.41 16 29 O -0.16 -1.63 7.30 5.00 0.04 -1.59 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.15 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.93 6.64 -51.93 -0.34 0.58 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.10 1.07 4.40 -52.39 -0.23 0.84 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.09 1.13 6.45 -51.93 -0.34 0.79 16 41 H 0.07 1.19 7.96 -51.93 -0.41 0.78 16 42 H 0.05 0.92 7.99 -51.93 -0.42 0.50 16 43 H 0.04 1.19 7.38 -51.93 -0.38 0.81 16 44 H 0.04 1.19 7.50 -51.93 -0.39 0.80 16 45 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.03 0.68 7.92 -51.93 -0.41 0.27 16 47 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.09 1.22 7.23 -51.93 -0.38 0.84 16 50 H 0.10 1.16 7.04 -51.93 -0.37 0.79 16 51 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 395.49 15.07 5.96 5.96 Total: -1.00 -32.78 395.49 -10.40 -43.18 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -8.28 Total: -2.02 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -1.62 Total: 4.82 kcal Atomic # 7 Polarization: -58.04 SS G_CDS: -1.54 Total: -59.58 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.11 Total: -9.59 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.78 -10.40 -43.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046016185.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.981 kcal (2) G-P(sol) polarization free energy of solvation -32.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds