Wall clock time and date at job start Wed Apr 1 2020 04:24:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35124 * 125.61529 * 2 1 4 4 C 1.40363 * 107.11696 * 179.97438 * 3 2 1 5 5 C 1.50704 * 126.64867 * 179.97438 * 4 3 2 6 6 C 1.36543 * 106.70710 * 0.02562 * 4 3 2 7 7 C 1.46655 * 125.98842 * 179.97438 * 6 4 3 8 8 O 1.21694 * 120.00143 * 7.92970 * 7 6 4 9 9 N 1.34773 * 120.00082 * 187.93136 * 7 6 4 10 10 C 1.47087 * 120.87984 * 6.75451 * 9 7 6 11 11 C 1.53697 * 108.27310 * 128.75442 * 10 9 7 12 12 N 1.46905 * 109.25611 * 54.08421 * 11 10 9 13 13 C 1.46902 * 110.99588 * 172.60545 * 12 11 10 14 14 H 1.08993 * 110.88957 * 71.87535 * 13 12 11 15 15 C 1.55158 * 111.00781 * 307.94948 * 13 12 11 16 16 C 1.54324 * 102.94538 * 206.42839 * 15 13 12 17 17 N 1.47025 * 107.27025 * 22.19187 * 16 15 13 18 18 C 1.36932 * 125.64638 * 181.09904 * 17 16 15 19 19 H 1.07998 * 119.99828 * 179.97438 * 18 17 16 20 20 C 1.38812 * 120.00158 * 359.95809 * 18 17 16 21 21 N 1.31614 * 120.00049 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 119.99937 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47612 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47175 * 119.99683 * 22 20 18 25 25 H 1.48505 * 109.47102 * 239.99368 * 22 20 18 26 26 C 1.47423 * 108.70244 * 1.05952 * 17 16 15 27 27 C 1.46898 * 111.27039 * 296.74987 * 12 11 10 28 28 C 1.47080 * 120.88287 * 187.03571 * 9 7 6 29 29 O 1.33933 * 125.61781 * 179.69925 * 2 1 3 30 30 H 1.08995 * 109.47099 * 89.99789 * 1 2 3 31 31 H 1.08997 * 109.47586 * 329.99767 * 1 2 3 32 32 H 1.09001 * 109.46982 * 209.99638 * 1 2 3 33 33 H 1.08008 * 126.44563 * 359.96854 * 3 2 1 34 34 H 1.08995 * 109.46937 * 90.02538 * 5 4 3 35 35 H 1.08997 * 109.47329 * 210.03203 * 5 4 3 36 36 H 1.08998 * 109.47089 * 330.03147 * 5 4 3 37 37 H 1.08997 * 109.62667 * 248.52136 * 10 9 7 38 38 H 1.08997 * 109.62556 * 9.10593 * 10 9 7 39 39 H 1.08994 * 109.64786 * 294.08011 * 11 10 9 40 40 H 1.09001 * 109.42143 * 173.94541 * 11 10 9 41 41 H 1.09004 * 110.71760 * 324.79296 * 15 13 12 42 42 H 1.08999 * 110.71904 * 88.05823 * 15 13 12 43 43 H 1.09001 * 109.87884 * 262.77416 * 16 15 13 44 44 H 1.09002 * 110.00788 * 141.68144 * 16 15 13 45 45 H 0.97004 * 120.00371 * 180.02562 * 21 20 18 46 46 H 1.09001 * 110.36974 * 217.03410 * 26 17 16 47 47 H 1.09002 * 110.36442 * 94.71071 * 26 17 16 48 48 H 1.08997 * 109.49213 * 303.15095 * 27 12 11 49 49 H 1.08997 * 109.49365 * 183.06259 * 27 12 11 50 50 H 1.09003 * 109.63191 * 350.89454 * 28 9 7 51 51 H 1.08998 * 109.63381 * 111.28111 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6531 0.0006 5 6 4.8617 1.5144 0.0003 6 6 3.5823 -0.7116 0.0004 7 6 4.7414 -1.6101 0.0003 8 8 5.8618 -1.1579 0.1458 9 7 4.5659 -2.9365 -0.1610 10 6 3.2417 -3.4889 -0.4850 11 6 3.3889 -4.4076 -1.7083 12 7 4.4301 -5.4085 -1.4401 13 6 4.4826 -6.4133 -2.5104 14 1 4.9044 -5.9890 -3.4215 15 6 3.0782 -7.0173 -2.7757 16 6 3.4045 -8.4146 -3.3437 17 7 4.7610 -8.7621 -2.8956 18 6 5.4326 -9.9148 -3.2041 19 1 6.4305 -10.0766 -2.8242 20 6 4.8307 -10.8757 -4.0050 21 7 3.6142 -10.6790 -4.4673 22 14 5.7466 -12.4485 -4.4253 23 1 7.0869 -12.4267 -3.7864 24 1 4.9786 -13.6171 -3.9256 25 1 5.9025 -12.5519 -5.8985 26 6 5.2787 -7.6635 -2.0599 27 6 5.7415 -4.7750 -1.2481 28 6 5.6920 -3.8708 -0.0118 29 8 2.2870 -1.0888 0.0057 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3634 0.8899 0.5138 32 1 -0.3633 -0.8900 0.5138 33 1 1.9612 2.1260 -0.0005 34 1 5.1599 1.7223 1.0278 35 1 5.6684 0.9916 -0.5135 36 1 4.6512 2.4522 -0.5137 37 1 2.8662 -4.0611 0.3634 38 1 2.5528 -2.6765 -0.7162 39 1 3.6692 -3.8156 -2.5795 40 1 2.4412 -4.9110 -1.8997 41 1 2.5127 -7.1007 -1.8475 42 1 2.5339 -6.4208 -3.5078 43 1 3.3689 -8.3896 -4.4328 44 1 2.6905 -9.1467 -2.9663 45 1 3.1934 -11.3506 -5.0266 46 1 6.3442 -7.5198 -2.2395 47 1 5.0954 -7.8703 -1.0054 48 1 5.9890 -4.1780 -2.1257 49 1 6.4999 -5.5448 -1.1055 50 1 6.6238 -3.3111 0.0699 51 1 5.5492 -4.4766 0.8830 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046016185.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:16 Heat of formation + Delta-G solvation = 7.444116 kcal Electronic energy + Delta-G solvation = -31223.754428 eV Core-core repulsion = 27125.230449 eV Total energy + Delta-G solvation = -4098.523979 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -43.82211 -41.17432 -39.86942 -38.16017 -35.85873 -35.00430 -33.91196 -33.37826 -32.36934 -30.98048 -29.81358 -28.91711 -28.25699 -27.21036 -25.85631 -24.79816 -23.24444 -22.47308 -21.79035 -21.47667 -21.03527 -20.27070 -18.94257 -18.58756 -17.74221 -17.48680 -16.97829 -16.55029 -16.45695 -16.20309 -15.92194 -15.85288 -15.40272 -15.12258 -14.80730 -14.47182 -14.43255 -14.11364 -14.08560 -13.94772 -13.86753 -13.74456 -13.66743 -13.53855 -13.28382 -13.17240 -12.93083 -12.77752 -12.59955 -12.50024 -12.41976 -12.23349 -11.94845 -11.84432 -11.70450 -11.59683 -11.51669 -11.20046 -10.71496 -10.64435 -10.00816 -9.45519 -9.28832 -8.89734 -7.85174 -5.20752 -0.03245 1.31982 1.46038 1.46917 1.49385 1.57406 1.91110 2.03380 2.47707 2.78677 3.33871 3.36935 3.61812 3.71645 3.76977 3.78572 3.89539 3.95407 4.10282 4.17972 4.23768 4.28041 4.35436 4.41367 4.46010 4.51765 4.55278 4.64596 4.67121 4.70436 4.73981 4.76421 4.80165 4.85728 4.89559 4.94564 4.99326 4.99713 5.06235 5.15105 5.19558 5.26601 5.33577 5.45247 5.52801 5.65343 5.75109 5.85550 6.01117 6.04220 6.20500 6.24199 6.86559 7.10472 7.77353 8.41759 9.25523 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023428 B = 0.002152 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.867290 B =13010.049046 C =13953.986505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.025 3.975 3 C -0.232 4.232 4 C -0.088 4.088 5 C -0.091 4.091 6 C -0.120 4.120 7 C 0.599 3.401 8 O -0.554 6.554 9 N -0.606 5.606 10 C 0.111 3.889 11 C 0.043 3.957 12 N -0.525 5.525 13 C 0.087 3.913 14 H 0.040 0.960 15 C -0.117 4.117 16 C 0.186 3.814 17 N -0.629 5.629 18 C -0.240 4.240 19 H 0.082 0.918 20 C -0.068 4.068 21 N -0.952 5.952 22 Si 0.979 3.021 23 H -0.266 1.266 24 H -0.291 1.291 25 H -0.292 1.292 26 C 0.149 3.851 27 C 0.046 3.954 28 C 0.124 3.876 29 O -0.163 6.163 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.087 0.913 33 H 0.181 0.819 34 H 0.078 0.922 35 H 0.062 0.938 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.030 0.970 40 H 0.104 0.896 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.010 0.990 44 H 0.009 0.991 45 H 0.247 0.753 46 H 0.036 0.964 47 H 0.032 0.968 48 H 0.030 0.970 49 H 0.094 0.906 50 H 0.094 0.906 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.024 26.858 10.612 29.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.027 4.027 3 C -0.251 4.251 4 C -0.091 4.091 5 C -0.147 4.147 6 C -0.171 4.171 7 C 0.389 3.611 8 O -0.436 6.436 9 N -0.338 5.338 10 C -0.010 4.010 11 C -0.085 4.085 12 N -0.250 5.250 13 C -0.022 4.022 14 H 0.058 0.942 15 C -0.156 4.156 16 C 0.061 3.939 17 N -0.356 5.356 18 C -0.369 4.369 19 H 0.100 0.900 20 C -0.261 4.261 21 N -0.601 5.601 22 Si 0.808 3.192 23 H -0.190 1.190 24 H -0.218 1.218 25 H -0.219 1.219 26 C 0.023 3.977 27 C -0.083 4.083 28 C 0.002 3.998 29 O -0.061 6.061 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.106 0.894 33 H 0.198 0.802 34 H 0.096 0.904 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.130 0.870 39 H 0.049 0.951 40 H 0.122 0.878 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.028 0.972 44 H 0.027 0.973 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.049 0.951 48 H 0.048 0.952 49 H 0.112 0.888 50 H 0.112 0.888 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.649 26.341 11.024 29.319 hybrid contribution 0.769 -0.822 -1.325 1.738 sum -5.880 25.520 9.699 27.926 Atomic orbital electron populations 1.20671 0.81572 1.05972 1.05358 1.23750 0.95957 0.83866 0.99114 1.21782 0.90662 1.01259 1.11348 1.20979 0.97802 0.92023 0.98257 1.20392 0.92808 0.98396 1.03120 1.21546 0.82211 0.94186 1.19124 1.16883 0.86275 0.81338 0.76614 1.90802 1.23881 1.75872 1.53009 1.48174 1.11760 1.05245 1.68597 1.22382 0.83109 0.97696 0.97850 1.22619 0.96946 0.92801 0.96182 1.61929 1.05677 1.14065 1.43360 1.22542 0.96928 0.91387 0.91386 0.94240 1.22780 0.95785 0.95769 1.01223 1.20893 0.85595 0.91705 0.95717 1.44752 1.14846 1.17842 1.58121 1.19487 0.98235 0.94088 1.25086 0.90018 1.25665 0.97743 1.02089 1.00591 1.70188 1.14825 1.35549 1.39528 0.84994 0.78020 0.79052 0.77173 1.19002 1.21847 1.21921 1.21550 0.95667 0.86538 0.93938 1.22462 0.91722 0.97174 0.96954 1.21761 0.89712 0.90146 0.98185 1.84141 1.15543 1.34827 1.71573 0.88047 0.86794 0.89388 0.80181 0.90354 0.91948 0.89231 0.89449 0.86967 0.95132 0.87800 0.90112 0.90233 0.97217 0.97276 0.94395 0.94534 0.95054 0.95202 0.88816 0.88787 0.89353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.41 71.24 0.74 0.34 16 2 C 0.03 0.35 7.31 24.97 0.18 0.53 16 3 C -0.23 -3.36 10.73 22.07 0.24 -3.12 16 4 C -0.09 -1.78 6.20 -19.74 -0.12 -1.90 16 5 C -0.09 -1.64 9.74 71.24 0.69 -0.95 16 6 C -0.12 -2.79 6.76 24.07 0.16 -2.63 16 7 C 0.60 16.06 7.65 86.44 0.66 16.72 16 8 O -0.55 -17.38 14.31 -4.33 -0.06 -17.44 16 9 N -0.61 -14.62 3.00 -821.75 -2.47 -17.09 16 10 C 0.11 2.30 6.26 86.50 0.54 2.84 16 11 C 0.04 0.99 5.40 86.54 0.47 1.46 16 12 N -0.53 -14.42 4.53 -860.95 -3.90 -18.32 16 13 C 0.09 2.96 2.73 46.31 0.13 3.09 16 14 H 0.04 1.43 8.13 -2.39 -0.02 1.41 16 15 C -0.12 -4.19 4.93 31.78 0.16 -4.04 16 16 C 0.19 9.27 5.38 86.73 0.47 9.74 16 17 N -0.63 -32.91 3.39 -691.98 -2.35 -35.26 16 18 C -0.24 -13.67 10.28 84.03 0.86 -12.81 16 19 H 0.08 4.46 7.83 -2.91 -0.02 4.44 16 20 C -0.07 -3.93 5.49 84.86 0.47 -3.47 16 21 N -0.95 -57.87 10.31 21.65 0.22 -57.64 16 22 Si 0.98 46.32 29.55 68.60 2.03 48.35 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 24 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 25 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 26 C 0.15 6.15 6.10 86.86 0.53 6.68 16 27 C 0.05 1.16 5.53 86.39 0.48 1.64 16 28 C 0.12 2.90 6.61 86.35 0.57 3.47 16 29 O -0.16 -3.13 7.30 -5.03 -0.04 -3.17 16 30 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.18 1.51 8.06 -2.91 -0.02 1.48 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.41 6.64 -2.39 -0.02 1.39 16 36 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.11 2.14 4.40 -9.73 -0.04 2.10 16 39 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.10 2.21 6.45 -2.39 -0.02 2.19 16 41 H 0.08 2.70 7.96 -2.38 -0.02 2.68 16 42 H 0.08 2.48 7.99 -2.39 -0.02 2.46 16 43 H 0.01 0.54 7.38 -2.39 -0.02 0.52 16 44 H 0.01 0.50 7.50 -2.39 -0.02 0.49 16 45 H 0.25 14.53 8.31 -92.71 -0.77 13.75 16 46 H 0.04 1.48 7.92 -2.39 -0.02 1.46 16 47 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 49 H 0.09 2.37 7.23 -2.39 -0.02 2.35 16 50 H 0.09 2.26 7.04 -2.39 -0.02 2.24 16 51 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -73.18 395.49 1.55 -71.63 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.89 Total: 11.35 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: 7.22 Total: 17.59 kcal Atomic # 7 Polarization: -119.82 SS G_CDS: -8.49 Total: -128.31 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.10 Total: -20.61 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -73.18 1.55 -71.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046016185.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.075 kcal (2) G-P(sol) polarization free energy of solvation -73.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds