Wall clock time and date at job start Wed Apr 1 2020 04:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40370 * 126.44356 * 2 1 4 4 C 1.36548 * 106.70550 * 179.97438 * 3 2 1 5 5 C 1.46653 * 125.98135 * 179.97438 * 4 3 2 6 6 O 1.21692 * 120.00690 * 6.77918 * 5 4 3 7 7 N 1.34779 * 119.99659 * 186.77752 * 5 4 3 8 8 C 1.47079 * 120.88362 * 176.31879 * 7 5 4 9 9 C 1.53239 * 108.52612 * 231.20903 * 8 7 5 10 10 N 1.46900 * 109.33795 * 306.17272 * 9 8 7 11 11 C 1.46893 * 110.99835 * 187.25423 * 10 9 8 12 12 H 1.09002 * 110.88571 * 303.87780 * 11 10 9 13 13 C 1.55158 * 111.00542 * 179.97438 * 11 10 9 14 14 C 1.54326 * 102.94363 * 206.42025 * 13 11 10 15 15 N 1.47027 * 107.26906 * 22.19354 * 14 13 11 16 16 C 1.36934 * 125.64325 * 181.02272 * 15 14 13 17 17 H 1.08002 * 119.99690 * 185.17936 * 16 15 14 18 18 C 1.38810 * 120.00316 * 5.17573 * 16 15 14 19 19 N 1.31616 * 120.00299 * 5.43217 * 18 16 15 20 20 Si 1.86803 * 119.99854 * 185.42744 * 18 16 15 21 21 H 1.48505 * 109.46829 * 85.00220 * 20 18 16 22 22 H 1.48502 * 109.47270 * 325.00152 * 20 18 16 23 23 H 1.48500 * 109.46965 * 205.00177 * 20 18 16 24 24 C 1.47426 * 108.70406 * 1.28547 * 15 14 13 25 25 C 1.46892 * 111.27100 * 63.09993 * 10 9 8 26 26 C 1.47080 * 120.87993 * 356.34616 * 7 5 4 27 27 O 1.34906 * 108.02298 * 0.24312 * 4 3 2 28 28 C 1.33924 * 109.38897 * 359.59657 * 27 4 3 29 29 C 1.50706 * 125.61746 * 180.19667 * 28 27 4 30 30 H 1.09001 * 109.47142 * 89.97659 * 1 2 3 31 31 H 1.08998 * 109.47204 * 209.97438 * 1 2 3 32 32 H 1.08999 * 109.47107 * 329.97548 * 1 2 3 33 33 H 1.07994 * 126.64136 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.63001 * 111.49413 * 8 7 5 35 35 H 1.09007 * 109.78900 * 351.01588 * 8 7 5 36 36 H 1.08994 * 109.49163 * 186.21148 * 9 8 7 37 37 H 1.08995 * 109.51195 * 66.14057 * 9 8 7 38 38 H 1.09002 * 110.72179 * 88.05449 * 13 11 10 39 39 H 1.09001 * 110.87193 * 324.85387 * 13 11 10 40 40 H 1.08993 * 109.88212 * 262.77737 * 14 13 11 41 41 H 1.08997 * 110.00953 * 141.68004 * 14 13 11 42 42 H 0.96993 * 120.00046 * 179.97438 * 19 18 16 43 43 H 1.08994 * 110.36425 * 94.48359 * 24 15 14 44 44 H 1.08997 * 110.36133 * 216.80832 * 24 15 14 45 45 H 1.09000 * 109.49503 * 56.85481 * 25 10 9 46 46 H 1.09000 * 109.49380 * 176.93573 * 25 10 9 47 47 H 1.09000 * 109.62665 * 248.49849 * 26 7 5 48 48 H 1.08997 * 109.63216 * 8.88303 * 26 7 5 49 49 H 1.08994 * 109.47190 * 270.24442 * 29 28 27 50 50 H 1.09003 * 109.47155 * 30.24764 * 29 28 27 51 51 H 1.09002 * 109.47210 * 150.23956 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3409 1.1292 0.0000 4 6 3.6261 0.6680 0.0006 5 6 4.8379 1.4941 0.0003 6 8 4.7513 2.7016 0.1238 7 7 6.0476 0.9157 -0.1368 8 6 7.2689 1.7309 -0.2205 9 6 8.0665 1.2880 -1.4517 10 7 8.2908 -0.1625 -1.3901 11 6 9.1965 -0.6009 -2.4603 12 1 8.8148 -0.3057 -3.4377 13 6 9.4339 -2.1329 -2.3950 14 6 10.8219 -2.2957 -3.0497 15 7 11.5094 -1.0004 -2.9433 16 6 12.7611 -0.7196 -3.4224 17 1 13.2136 0.2401 -3.2209 18 6 13.4483 -1.6684 -4.1669 19 7 12.8574 -2.7953 -4.5033 20 14 15.2120 -1.3458 -4.6913 21 1 16.1343 -1.7435 -3.5975 22 1 15.3849 0.0999 -4.9836 23 1 15.5187 -2.1373 -5.9098 24 6 10.6305 -0.0559 -2.2299 25 6 7.0216 -0.9004 -1.4391 26 6 6.1812 -0.5473 -0.2074 27 8 3.5857 -0.6804 -0.0045 28 6 2.3097 -1.0870 0.0006 29 6 1.8455 -2.5208 0.0016 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8898 0.5142 33 1 2.0266 2.1624 -0.0004 34 1 7.8695 1.5838 0.6772 35 1 7.0040 2.7840 -0.3151 36 1 9.0264 1.8041 -1.4682 37 1 7.5070 1.5315 -2.3548 38 1 8.6734 -2.6657 -2.9658 39 1 9.4519 -2.4794 -1.3617 40 1 10.7073 -2.5694 -4.0985 41 1 11.3933 -3.0626 -2.5268 42 1 13.3375 -3.4581 -5.0238 43 1 10.8686 -0.0457 -1.1663 44 1 10.7278 0.9447 -2.6510 45 1 6.4762 -0.6265 -2.3422 46 1 7.2237 -1.9715 -1.4466 47 1 6.6772 -0.9134 0.6915 48 1 5.1940 -1.0015 -0.2915 49 1 1.7334 -2.8671 -1.0258 50 1 2.5803 -3.1403 0.5158 51 1 0.8869 -2.5920 0.5157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046023234.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:57 Heat of formation + Delta-G solvation = 9.671166 kcal Electronic energy + Delta-G solvation = -31086.553654 eV Core-core repulsion = 26988.126248 eV Total energy + Delta-G solvation = -4098.427407 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.86609 -41.21158 -39.87712 -38.16460 -35.91275 -35.27676 -33.87445 -33.08204 -32.38460 -30.99661 -29.86063 -29.42608 -27.82573 -27.13738 -25.85960 -24.71733 -23.57851 -22.37805 -21.78429 -21.52175 -21.18419 -20.30835 -18.91256 -18.40250 -17.72684 -17.57439 -16.95791 -16.68336 -16.55650 -16.25855 -15.95680 -15.88450 -15.40609 -15.17856 -14.79048 -14.56628 -14.47683 -14.13255 -14.06703 -13.96737 -13.88635 -13.78237 -13.63789 -13.56693 -13.23511 -12.95720 -12.90086 -12.74004 -12.59336 -12.46044 -12.38264 -12.19856 -11.99879 -11.83283 -11.69979 -11.62982 -11.54111 -11.31935 -10.76626 -10.71872 -10.03264 -9.42715 -9.28919 -8.89178 -7.83542 -5.21734 -0.05749 1.26317 1.42240 1.45739 1.48264 1.56055 1.88307 2.00231 2.47832 2.78310 3.29605 3.33056 3.61849 3.74302 3.77492 3.80645 3.89883 3.93925 4.09482 4.17219 4.21924 4.25493 4.30154 4.35255 4.43556 4.50447 4.57649 4.64850 4.70121 4.71364 4.75962 4.79834 4.86359 4.89274 4.90518 4.93946 4.99644 5.05409 5.07804 5.11153 5.15674 5.19698 5.34085 5.44422 5.59002 5.61593 5.78122 5.83746 6.00185 6.03463 6.18868 6.23232 6.80982 7.09988 7.77274 8.41842 9.24813 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023709 B = 0.002108 C = 0.001969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.704188 B =13282.529769 C =14214.249079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.204 4.204 3 C -0.116 4.116 4 C -0.106 4.106 5 C 0.599 3.401 6 O -0.562 6.562 7 N -0.603 5.603 8 C 0.123 3.877 9 C 0.045 3.955 10 N -0.525 5.525 11 C 0.087 3.913 12 H 0.039 0.961 13 C -0.115 4.115 14 C 0.181 3.819 15 N -0.628 5.628 16 C -0.242 4.242 17 H 0.081 0.919 18 C -0.067 4.067 19 N -0.950 5.950 20 Si 0.979 3.021 21 H -0.285 1.285 22 H -0.269 1.269 23 H -0.294 1.294 24 C 0.148 3.852 25 C 0.044 3.956 26 C 0.103 3.897 27 O -0.159 6.159 28 C 0.016 3.984 29 C -0.080 4.080 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.158 0.842 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.030 0.970 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.024 0.976 41 H -0.002 1.002 42 H 0.247 0.753 43 H 0.033 0.967 44 H 0.036 0.964 45 H 0.030 0.970 46 H 0.105 0.895 47 H 0.089 0.911 48 H 0.122 0.878 49 H 0.100 0.900 50 H 0.089 0.911 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.487 1.240 11.133 29.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.205 4.205 3 C -0.136 4.136 4 C -0.157 4.157 5 C 0.389 3.611 6 O -0.444 6.444 7 N -0.334 5.334 8 C 0.001 3.999 9 C -0.084 4.084 10 N -0.250 5.250 11 C -0.022 4.022 12 H 0.057 0.943 13 C -0.154 4.154 14 C 0.055 3.945 15 N -0.354 5.354 16 C -0.371 4.371 17 H 0.099 0.901 18 C -0.260 4.260 19 N -0.598 5.598 20 Si 0.807 3.193 21 H -0.212 1.212 22 H -0.194 1.194 23 H -0.220 1.220 24 C 0.022 3.978 25 C -0.085 4.085 26 C -0.018 4.018 27 O -0.057 6.057 28 C -0.035 4.035 29 C -0.136 4.136 30 H 0.094 0.906 31 H 0.106 0.894 32 H 0.089 0.911 33 H 0.175 0.825 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.048 0.952 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.042 0.958 41 H 0.016 0.984 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.054 0.946 45 H 0.049 0.951 46 H 0.123 0.877 47 H 0.107 0.893 48 H 0.139 0.861 49 H 0.118 0.882 50 H 0.108 0.892 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -26.863 1.502 11.521 29.268 hybrid contribution 1.035 0.486 -1.384 1.795 sum -25.828 1.988 10.137 27.818 Atomic orbital electron populations 1.20287 0.86435 1.03918 1.03097 1.20565 0.98998 0.90948 1.10018 1.22045 0.90706 1.01235 0.99650 1.21664 0.95638 0.81024 1.17359 1.16918 0.81685 0.86001 0.76508 1.90828 1.86149 1.14193 1.53214 1.48193 1.05806 1.08819 1.70550 1.21771 0.83716 0.95688 0.98707 1.22471 1.00547 0.88718 0.96654 1.61942 1.12779 1.04415 1.45903 1.22578 0.92269 0.95897 0.91445 0.94327 1.22740 0.96764 0.94477 1.01386 1.20972 0.89389 0.86806 0.97329 1.44732 1.15387 1.08962 1.66343 1.19427 0.91334 1.00219 1.26129 0.90110 1.25674 1.02794 0.96920 1.00648 1.70169 1.36983 1.09417 1.43278 0.85089 0.79595 0.77626 0.76981 1.21222 1.19435 1.22035 1.21612 0.88537 0.92392 0.95228 1.22513 0.88899 1.00363 0.96688 1.22512 1.02246 0.78076 0.98994 1.84089 1.28952 1.20932 1.71692 1.23610 0.80501 0.98972 1.00463 1.20675 1.03160 0.84485 1.05269 0.90554 0.89393 0.91146 0.82463 0.89287 0.88850 0.88741 0.95171 0.90224 0.90148 0.95768 0.98368 0.94378 0.94885 0.94619 0.95137 0.87724 0.89268 0.86123 0.88166 0.89206 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.17 71.24 0.72 0.04 16 2 C -0.20 -3.12 6.14 -20.06 -0.12 -3.24 16 3 C -0.12 -2.39 10.58 22.39 0.24 -2.15 16 4 C -0.11 -2.47 6.86 24.07 0.17 -2.30 16 5 C 0.60 16.26 7.67 86.44 0.66 16.92 16 6 O -0.56 -18.37 16.35 -4.32 -0.07 -18.45 16 7 N -0.60 -14.56 3.01 -822.66 -2.48 -17.03 16 8 C 0.12 2.90 6.58 86.35 0.57 3.47 16 9 C 0.04 1.14 5.52 86.38 0.48 1.61 16 10 N -0.53 -14.33 4.52 -861.49 -3.90 -18.23 16 11 C 0.09 2.98 2.73 46.39 0.13 3.10 16 12 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 13 C -0.12 -4.10 5.03 31.78 0.16 -3.94 16 14 C 0.18 8.95 5.43 86.73 0.47 9.42 16 15 N -0.63 -32.77 3.39 -691.55 -2.35 -35.11 16 16 C -0.24 -13.78 10.27 84.03 0.86 -12.92 16 17 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 18 C -0.07 -3.88 5.46 84.86 0.46 -3.42 16 19 N -0.95 -57.56 10.40 21.65 0.23 -57.33 16 20 Si 0.98 46.23 29.56 68.60 2.03 48.26 16 21 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 24 C 0.15 6.10 5.95 86.93 0.52 6.62 16 25 C 0.04 0.99 5.43 86.39 0.47 1.46 16 26 C 0.10 2.09 6.47 86.35 0.56 2.65 16 27 O -0.16 -3.03 7.09 -4.89 -0.03 -3.06 16 28 C 0.02 0.23 7.31 24.97 0.18 0.41 16 29 C -0.08 -0.44 10.21 71.24 0.73 0.29 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.09 0.37 7.13 -2.39 -0.02 0.36 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.16 3.12 8.06 -2.91 -0.02 3.09 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.09 2.27 7.09 -2.38 -0.02 2.26 16 36 H 0.09 2.40 7.05 -2.39 -0.02 2.38 16 37 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.08 2.47 7.96 -2.39 -0.02 2.45 16 39 H 0.08 2.67 8.11 -2.39 -0.02 2.65 16 40 H 0.02 1.35 6.96 -2.39 -0.02 1.33 16 41 H 0.00 -0.11 7.90 -2.39 -0.02 -0.12 16 42 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.04 1.45 7.87 -2.39 -0.02 1.43 16 45 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.10 2.17 6.64 -2.39 -0.02 2.15 16 47 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.12 2.25 3.86 -50.59 -0.20 2.05 16 49 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 50 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 51 H 0.11 0.16 7.12 -2.39 -0.02 0.14 16 Total: -1.00 -73.46 396.75 1.41 -72.04 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: 0.74 Total: 10.89 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 7.25 Total: 18.02 kcal Atomic # 7 Polarization: -119.21 SS G_CDS: -8.49 Total: -127.71 kcal Atomic # 8 Polarization: -21.40 SS G_CDS: -0.11 Total: -21.51 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -73.46 1.41 -72.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046023234.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.715 kcal (2) G-P(sol) polarization free energy of solvation -73.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds