Wall clock time and date at job start Wed Apr 1 2020 04:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30020 * 127.33295 * 2 1 4 4 O 1.20659 * 112.29561 * 180.26037 * 3 2 1 5 5 C 1.33493 * 113.16192 * 0.02562 * 4 3 2 6 6 C 1.50696 * 126.82676 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47161 * 300.03543 * 6 5 4 8 8 C 1.53007 * 109.47490 * 60.04203 * 6 5 4 9 9 C 1.37355 * 106.34070 * 359.97438 * 5 4 3 10 10 C 1.47394 * 128.56674 * 180.02562 * 9 5 4 11 11 O 1.21611 * 119.99901 * 270.02724 * 10 9 5 12 12 N 1.34774 * 120.00107 * 90.02365 * 10 9 5 13 13 C 1.46506 * 119.99856 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.32620 * 35.36053 * 13 12 10 15 15 C 1.53033 * 109.32249 * 155.00133 * 13 12 10 16 16 C 1.53967 * 108.82424 * 175.67989 * 15 13 12 17 17 H 1.08999 * 112.99635 * 168.99892 * 16 15 13 18 18 C 1.55423 * 106.41708 * 293.81598 * 16 15 13 19 19 C 1.55171 * 100.35404 * 73.38029 * 18 16 15 20 20 H 1.09002 * 112.49155 * 162.67362 * 19 18 16 21 21 C 1.52981 * 109.32599 * 275.88700 * 13 12 10 22 22 N 1.47794 * 104.25561 * 40.55268 * 19 18 16 23 23 C 1.36939 * 125.85420 * 153.51061 * 22 19 18 24 24 H 1.07994 * 120.00163 * 0.02562 * 23 22 19 25 25 C 1.38817 * 119.99421 * 180.02562 * 23 22 19 26 26 N 1.31615 * 120.00134 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99647 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47112 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47036 * 120.00040 * 27 25 23 30 30 H 1.48500 * 109.46698 * 239.99739 * 27 25 23 31 31 C 1.47078 * 108.28432 * 333.53125 * 22 19 18 32 32 H 1.08993 * 109.47040 * 269.68162 * 1 2 3 33 33 H 1.09004 * 109.47124 * 29.68396 * 1 2 3 34 34 H 1.08996 * 109.46675 * 149.67715 * 1 2 3 35 35 H 1.09004 * 109.47105 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.47123 * 60.00899 * 7 6 5 37 37 H 1.09006 * 109.47034 * 180.02562 * 7 6 5 38 38 H 1.08994 * 109.47635 * 300.00055 * 7 6 5 39 39 H 1.08997 * 109.47007 * 180.02562 * 8 6 5 40 40 H 1.09004 * 109.46302 * 299.99703 * 8 6 5 41 41 H 1.08997 * 109.47122 * 59.99243 * 8 6 5 42 42 H 0.96999 * 120.00519 * 0.02562 * 12 10 9 43 43 H 1.09002 * 109.57995 * 295.48084 * 15 13 12 44 44 H 1.09002 * 109.58142 * 55.74602 * 15 13 12 45 45 H 1.09002 * 111.23910 * 191.15073 * 18 16 15 46 46 H 1.09000 * 111.23675 * 315.55832 * 18 16 15 47 47 H 1.09003 * 109.53747 * 304.53156 * 21 13 12 48 48 H 1.08999 * 109.52933 * 64.75704 * 21 13 12 49 49 H 0.97004 * 119.99881 * 179.97438 * 26 25 23 50 50 H 1.08994 * 109.98233 * 241.74831 * 31 22 19 51 51 H 1.09000 * 109.97473 * 120.46080 * 31 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 -0.0051 5 6 3.6494 -0.6007 -0.0099 6 6 4.9712 -1.3245 -0.0174 7 6 5.7604 -0.9322 -1.2681 8 6 5.7695 -0.9415 1.2305 9 6 2.3992 -1.1696 -0.0068 10 6 2.0401 -2.5991 -0.0093 11 8 1.8885 -3.1861 -1.0636 12 7 1.8798 -3.2557 1.1567 13 6 1.5234 -4.6768 1.1541 14 1 2.0104 -5.1693 0.3124 15 6 1.9963 -5.3198 2.4598 16 6 1.5214 -6.7840 2.4929 17 1 1.9775 -7.3615 3.2971 18 6 -0.0301 -6.7409 2.5744 19 6 -0.3734 -6.3049 1.1253 20 1 -1.4148 -6.4977 0.8674 21 6 0.0070 -4.8182 1.0104 22 7 0.5681 -7.0710 0.2820 23 6 0.3623 -7.4363 -1.0216 24 1 -0.5552 -7.1621 -1.5209 25 6 1.3333 -8.1590 -1.7013 26 7 2.4517 -8.4926 -1.0930 27 14 1.0530 -8.6567 -3.4799 28 1 -0.2730 -8.1617 -3.9293 29 1 2.1161 -8.0665 -4.3324 30 1 1.0935 -10.1369 -3.5918 31 6 1.7635 -7.3741 1.0834 32 1 -0.3633 -0.0057 1.0276 33 1 -0.3633 0.8928 -0.5089 34 1 -0.3632 -0.8871 -0.5188 35 1 4.7964 -2.4004 -0.0205 36 1 5.9354 0.1437 -1.2647 37 1 6.7163 -1.4561 -1.2737 38 1 5.1918 -1.2051 -2.1570 39 1 6.7257 -1.4647 1.2247 40 1 5.9444 0.1344 1.2337 41 1 5.2073 -1.2209 2.1214 42 1 2.0004 -2.7876 1.9976 43 1 3.0847 -5.2876 2.5096 44 1 1.5757 -4.7781 3.3070 45 1 -0.4413 -7.7252 2.7982 46 1 -0.3669 -6.0009 3.3003 47 1 -0.4883 -4.2532 1.8002 48 1 -0.3040 -4.4365 0.0379 49 1 3.1300 -8.9980 -1.5679 50 1 2.6415 -6.9121 0.6321 51 1 1.9031 -8.4531 1.1504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047092925.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:36 Heat of formation + Delta-G solvation = 42.016281 kcal Electronic energy + Delta-G solvation = -32506.110085 eV Core-core repulsion = 28409.085268 eV Total energy + Delta-G solvation = -4097.024817 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.94540 -40.08575 -38.61862 -36.23376 -34.61389 -34.55504 -32.81331 -31.15252 -30.68779 -29.58595 -28.88234 -28.26989 -27.44986 -25.31838 -24.68196 -23.13874 -23.07018 -21.69841 -20.36787 -19.55834 -19.43260 -18.73082 -17.81281 -17.61389 -16.97214 -16.29090 -15.96763 -15.62422 -14.76071 -14.53236 -14.28878 -14.25135 -13.69116 -13.62597 -13.51429 -13.38790 -13.34723 -12.99414 -12.91555 -12.74472 -12.46949 -12.05105 -11.84040 -11.80015 -11.71084 -11.60614 -11.55055 -11.51865 -11.23821 -11.01049 -10.72322 -10.68641 -10.56283 -10.15087 -9.93870 -9.92368 -9.75949 -9.72090 -9.54266 -9.43683 -9.34849 -8.65419 -8.53804 -6.77830 -5.64174 -2.96288 1.24024 1.83669 2.60342 2.77517 3.42926 3.46713 3.53045 3.54468 4.01493 4.10273 4.57115 4.60600 4.67677 4.75873 4.96110 5.07823 5.20372 5.21684 5.25322 5.32222 5.36158 5.41116 5.48679 5.51680 5.54133 5.57466 5.60030 5.62557 5.75440 5.86596 5.87455 5.91803 5.93935 5.98548 6.02390 6.05855 6.06666 6.11324 6.20791 6.54691 6.60073 6.64950 6.82431 6.86595 6.96474 7.03622 7.60417 7.63563 7.73508 7.88314 8.13314 8.30954 8.43706 9.29100 9.89338 10.54819 11.47933 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010942 B = 0.003578 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.447724 B = 7824.593218 C = 8387.300116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.053 3.947 3 N -0.360 5.360 4 O 0.096 5.904 5 C 0.023 3.977 6 C -0.017 4.017 7 C -0.149 4.149 8 C -0.147 4.147 9 C -0.242 4.242 10 C 0.589 3.411 11 O -0.505 6.505 12 N -0.715 5.715 13 C 0.146 3.854 14 H 0.117 0.883 15 C -0.111 4.111 16 C -0.118 4.118 17 H 0.082 0.918 18 C -0.129 4.129 19 C 0.157 3.843 20 H 0.066 0.934 21 C -0.136 4.136 22 N -0.595 5.595 23 C -0.220 4.220 24 H 0.077 0.923 25 C -0.006 4.006 26 N -0.923 5.923 27 Si 0.908 3.092 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.292 1.292 31 C 0.181 3.819 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.392 0.608 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.044 0.956 48 H 0.059 0.941 49 H 0.250 0.750 50 H 0.046 0.954 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.142 15.614 9.852 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 N -0.067 5.067 4 O 0.035 5.965 5 C -0.041 4.041 6 C -0.037 4.037 7 C -0.207 4.207 8 C -0.205 4.205 9 C -0.249 4.249 10 C 0.372 3.628 11 O -0.379 6.379 12 N -0.365 5.365 13 C 0.044 3.956 14 H 0.135 0.865 15 C -0.150 4.150 16 C -0.138 4.138 17 H 0.100 0.900 18 C -0.167 4.167 19 C 0.048 3.952 20 H 0.084 0.916 21 C -0.177 4.177 22 N -0.320 5.320 23 C -0.348 4.348 24 H 0.095 0.905 25 C -0.202 4.202 26 N -0.571 5.571 27 Si 0.739 3.261 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.219 1.219 31 C 0.057 3.943 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.124 0.876 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.225 0.775 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.063 0.937 48 H 0.078 0.922 49 H 0.060 0.940 50 H 0.064 0.936 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.967 16.358 8.870 18.844 hybrid contribution -0.166 -0.709 -0.605 0.947 sum 2.801 15.649 8.265 17.918 Atomic orbital electron populations 1.20226 0.85202 1.04393 1.03698 1.24745 0.98549 0.86623 1.00997 1.73603 0.89205 1.23416 1.20448 1.84479 1.21379 1.22643 1.68012 1.24635 0.96946 0.83557 0.98957 1.19930 0.86942 0.98973 0.97844 1.21875 1.00250 1.02240 0.96304 1.21881 1.00167 1.02437 0.95997 1.22143 0.92582 0.95781 1.14387 1.16876 0.77725 0.83564 0.84667 1.90944 1.48732 1.67372 1.30872 1.46202 1.70575 1.12396 1.07336 1.21270 0.96359 0.77717 1.00277 0.86538 1.21961 1.00257 0.96742 0.95992 1.22844 0.95662 0.94601 1.00708 0.89955 1.22999 0.95974 1.00472 0.97302 1.21511 0.94320 0.89484 0.89835 0.91635 1.22606 0.94866 0.99639 1.00579 1.44626 1.15403 1.62673 1.09284 1.19062 1.01796 1.28094 0.85859 0.90542 1.24717 0.96532 1.00787 0.98152 1.69945 1.07844 1.43881 1.35449 0.86096 0.77396 0.77679 0.84948 1.20577 1.21830 1.21949 1.21284 0.89927 0.98404 0.84730 0.89719 0.90052 0.89517 0.87649 0.91748 0.90902 0.91738 0.90913 0.91711 0.92017 0.77524 0.92112 0.92759 0.91848 0.92242 0.93748 0.92199 0.93977 0.93597 0.93747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.49 36.01 0.38 -0.45 16 2 C 0.05 0.71 7.59 -79.76 -0.61 0.11 16 3 N -0.36 -4.96 12.01 34.78 0.42 -4.54 16 4 O 0.10 1.24 11.06 18.65 0.21 1.45 16 5 C 0.02 0.28 6.06 -34.63 -0.21 0.07 16 6 C -0.02 -0.18 3.33 -91.77 -0.31 -0.49 16 7 C -0.15 -1.40 9.18 37.16 0.34 -1.06 16 8 C -0.15 -1.15 9.18 37.16 0.34 -0.81 16 9 C -0.24 -3.48 6.24 -102.90 -0.64 -4.12 16 10 C 0.59 9.98 7.25 -12.53 -0.09 9.89 16 11 O -0.51 -11.26 16.77 5.27 0.09 -11.17 16 12 N -0.71 -10.54 5.07 -54.88 -0.28 -10.82 16 13 C 0.15 2.58 2.07 -67.92 -0.14 2.44 16 14 H 0.12 2.72 5.39 -51.93 -0.28 2.44 16 15 C -0.11 -1.68 4.95 -26.21 -0.13 -1.81 16 16 C -0.12 -2.04 4.33 -87.93 -0.38 -2.42 16 17 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 18 C -0.13 -2.13 6.18 -24.30 -0.15 -2.28 16 19 C 0.16 3.10 4.30 -65.61 -0.28 2.82 16 20 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 21 C -0.14 -2.45 5.27 -26.28 -0.14 -2.59 16 22 N -0.60 -14.63 2.43 -161.36 -0.39 -15.02 16 23 C -0.22 -6.13 10.29 -15.06 -0.15 -6.29 16 24 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 25 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 26 N -0.92 -27.12 10.35 55.49 0.57 -26.54 16 27 Si 0.91 22.87 29.55 -169.99 -5.02 17.85 16 28 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 29 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 30 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 31 C 0.18 4.20 4.10 -2.82 -0.01 4.19 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.11 1.24 7.71 -51.93 -0.40 0.84 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.39 4.50 8.58 -40.82 -0.35 4.15 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.05 0.68 7.98 -51.93 -0.41 0.26 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.06 0.82 7.75 -51.93 -0.40 0.42 16 47 H 0.04 0.68 8.00 -51.93 -0.42 0.26 16 48 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 50 H 0.05 1.19 6.15 -51.93 -0.32 0.87 16 51 H 0.04 1.16 7.40 -51.93 -0.38 0.78 16 LS Contribution 403.94 15.07 6.09 6.09 Total: -1.00 -33.15 403.94 -9.03 -42.18 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -8.43 Total: 3.60 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: -2.28 Total: -3.06 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.32 Total: -56.92 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.29 Total: -9.73 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.15 -9.03 -42.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047092925.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.195 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds