Wall clock time and date at job start Wed Apr 1 2020 04:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30020 * 127.33295 * 2 1 4 4 O 1.20659 * 112.29561 * 180.26037 * 3 2 1 5 5 C 1.33493 * 113.16192 * 0.02562 * 4 3 2 6 6 C 1.50696 * 126.82676 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47161 * 300.03543 * 6 5 4 8 8 C 1.53007 * 109.47490 * 60.04203 * 6 5 4 9 9 C 1.37355 * 106.34070 * 359.97438 * 5 4 3 10 10 C 1.47394 * 128.56674 * 180.02562 * 9 5 4 11 11 O 1.21611 * 119.99901 * 270.02724 * 10 9 5 12 12 N 1.34774 * 120.00107 * 90.02365 * 10 9 5 13 13 C 1.46506 * 119.99856 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.32620 * 35.36053 * 13 12 10 15 15 C 1.53033 * 109.32249 * 155.00133 * 13 12 10 16 16 C 1.53967 * 108.82424 * 175.67989 * 15 13 12 17 17 H 1.08999 * 112.99635 * 168.99892 * 16 15 13 18 18 C 1.55423 * 106.41708 * 293.81598 * 16 15 13 19 19 C 1.55171 * 100.35404 * 73.38029 * 18 16 15 20 20 H 1.09002 * 112.49155 * 162.67362 * 19 18 16 21 21 C 1.52981 * 109.32599 * 275.88700 * 13 12 10 22 22 N 1.47794 * 104.25561 * 40.55268 * 19 18 16 23 23 C 1.36939 * 125.85420 * 153.51061 * 22 19 18 24 24 H 1.07994 * 120.00163 * 0.02562 * 23 22 19 25 25 C 1.38817 * 119.99421 * 180.02562 * 23 22 19 26 26 N 1.31615 * 120.00134 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99647 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47112 * 0.02562 * 27 25 23 29 29 H 1.48501 * 109.47036 * 120.00040 * 27 25 23 30 30 H 1.48500 * 109.46698 * 239.99739 * 27 25 23 31 31 C 1.47078 * 108.28432 * 333.53125 * 22 19 18 32 32 H 1.08993 * 109.47040 * 269.68162 * 1 2 3 33 33 H 1.09004 * 109.47124 * 29.68396 * 1 2 3 34 34 H 1.08996 * 109.46675 * 149.67715 * 1 2 3 35 35 H 1.09004 * 109.47105 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.47123 * 60.00899 * 7 6 5 37 37 H 1.09006 * 109.47034 * 180.02562 * 7 6 5 38 38 H 1.08994 * 109.47635 * 300.00055 * 7 6 5 39 39 H 1.08997 * 109.47007 * 180.02562 * 8 6 5 40 40 H 1.09004 * 109.46302 * 299.99703 * 8 6 5 41 41 H 1.08997 * 109.47122 * 59.99243 * 8 6 5 42 42 H 0.96999 * 120.00519 * 0.02562 * 12 10 9 43 43 H 1.09002 * 109.57995 * 295.48084 * 15 13 12 44 44 H 1.09002 * 109.58142 * 55.74602 * 15 13 12 45 45 H 1.09002 * 111.23910 * 191.15073 * 18 16 15 46 46 H 1.09000 * 111.23675 * 315.55832 * 18 16 15 47 47 H 1.09003 * 109.53747 * 304.53156 * 21 13 12 48 48 H 1.08999 * 109.52933 * 64.75704 * 21 13 12 49 49 H 0.97004 * 119.99881 * 179.97438 * 26 25 23 50 50 H 1.08994 * 109.98233 * 241.74831 * 31 22 19 51 51 H 1.09000 * 109.97473 * 120.46080 * 31 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7208 -0.0051 5 6 3.6494 -0.6007 -0.0099 6 6 4.9712 -1.3245 -0.0174 7 6 5.7604 -0.9322 -1.2681 8 6 5.7695 -0.9415 1.2305 9 6 2.3992 -1.1696 -0.0068 10 6 2.0401 -2.5991 -0.0093 11 8 1.8885 -3.1861 -1.0636 12 7 1.8798 -3.2557 1.1567 13 6 1.5234 -4.6768 1.1541 14 1 2.0104 -5.1693 0.3124 15 6 1.9963 -5.3198 2.4598 16 6 1.5214 -6.7840 2.4929 17 1 1.9775 -7.3615 3.2971 18 6 -0.0301 -6.7409 2.5744 19 6 -0.3734 -6.3049 1.1253 20 1 -1.4148 -6.4977 0.8674 21 6 0.0070 -4.8182 1.0104 22 7 0.5681 -7.0710 0.2820 23 6 0.3623 -7.4363 -1.0216 24 1 -0.5552 -7.1621 -1.5209 25 6 1.3333 -8.1590 -1.7013 26 7 2.4517 -8.4926 -1.0930 27 14 1.0530 -8.6567 -3.4799 28 1 -0.2730 -8.1617 -3.9293 29 1 2.1161 -8.0665 -4.3324 30 1 1.0935 -10.1369 -3.5918 31 6 1.7635 -7.3741 1.0834 32 1 -0.3633 -0.0057 1.0276 33 1 -0.3633 0.8928 -0.5089 34 1 -0.3632 -0.8871 -0.5188 35 1 4.7964 -2.4004 -0.0205 36 1 5.9354 0.1437 -1.2647 37 1 6.7163 -1.4561 -1.2737 38 1 5.1918 -1.2051 -2.1570 39 1 6.7257 -1.4647 1.2247 40 1 5.9444 0.1344 1.2337 41 1 5.2073 -1.2209 2.1214 42 1 2.0004 -2.7876 1.9976 43 1 3.0847 -5.2876 2.5096 44 1 1.5757 -4.7781 3.3070 45 1 -0.4413 -7.7252 2.7982 46 1 -0.3669 -6.0009 3.3003 47 1 -0.4883 -4.2532 1.8002 48 1 -0.3040 -4.4365 0.0379 49 1 3.1300 -8.9980 -1.5679 50 1 2.6415 -6.9121 0.6321 51 1 1.9031 -8.4531 1.1504 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047092925.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:35 Heat of formation + Delta-G solvation = 21.337895 kcal Electronic energy + Delta-G solvation = -32507.006768 eV Core-core repulsion = 28409.085268 eV Total energy + Delta-G solvation = -4097.921499 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.99433 -41.56211 -40.10485 -37.09439 -36.14528 -35.66312 -34.68505 -32.40308 -32.18207 -31.17453 -29.97264 -29.66342 -28.13928 -27.19750 -25.86778 -24.91542 -23.94755 -23.01224 -21.71685 -21.21054 -20.60178 -20.08571 -18.98709 -18.89196 -18.70997 -17.50853 -17.34814 -16.74221 -16.48566 -16.15434 -15.77561 -15.33008 -15.27617 -14.95438 -14.53810 -14.40994 -14.27527 -14.15588 -14.12764 -13.84757 -13.77923 -13.46282 -13.36142 -13.21904 -13.10070 -13.01600 -12.64676 -12.62155 -12.51035 -12.38542 -12.29801 -12.14883 -11.89933 -11.86974 -11.64895 -11.57079 -11.17793 -11.11533 -10.98293 -10.88807 -10.67248 -10.52459 -10.07805 -8.81034 -7.82149 -5.13169 0.19933 0.77884 1.29872 1.39205 1.42349 1.50209 1.67156 2.21094 2.49402 3.03447 3.09954 3.36786 3.62756 3.68079 3.72599 3.83699 3.90830 3.99149 4.00637 4.10669 4.15113 4.37167 4.39431 4.43555 4.52919 4.54151 4.54244 4.61818 4.65925 4.68731 4.73021 4.81249 4.81990 4.85302 4.88217 5.02929 5.04209 5.12253 5.20543 5.22097 5.28714 5.29835 5.35560 5.37188 5.50488 5.52315 5.63069 5.75993 5.86952 6.25258 6.47954 7.09633 7.16480 7.16742 7.84755 8.48252 9.28028 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010942 B = 0.003578 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.447724 B = 7824.593218 C = 8387.300116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.054 3.946 3 N -0.371 5.371 4 O 0.099 5.901 5 C 0.041 3.959 6 C -0.020 4.020 7 C -0.148 4.148 8 C -0.142 4.142 9 C -0.269 4.269 10 C 0.596 3.404 11 O -0.571 6.571 12 N -0.693 5.693 13 C 0.154 3.846 14 H 0.051 0.949 15 C -0.101 4.101 16 C -0.106 4.106 17 H 0.111 0.889 18 C -0.112 4.112 19 C 0.141 3.859 20 H 0.063 0.937 21 C -0.124 4.124 22 N -0.615 5.615 23 C -0.226 4.226 24 H 0.071 0.929 25 C -0.064 4.064 26 N -0.947 5.947 27 Si 0.962 3.038 28 H -0.271 1.271 29 H -0.300 1.300 30 H -0.287 1.287 31 C 0.190 3.810 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.040 0.960 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.414 0.586 43 H 0.067 0.933 44 H 0.105 0.895 45 H 0.061 0.939 46 H 0.107 0.893 47 H 0.089 0.911 48 H 0.020 0.980 49 H 0.243 0.757 50 H 0.005 0.995 51 H 0.001 0.999 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.785 17.769 13.163 22.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 N -0.079 5.079 4 O 0.040 5.960 5 C -0.023 4.023 6 C -0.040 4.040 7 C -0.206 4.206 8 C -0.199 4.199 9 C -0.277 4.277 10 C 0.381 3.619 11 O -0.449 6.449 12 N -0.344 5.344 13 C 0.050 3.950 14 H 0.069 0.931 15 C -0.139 4.139 16 C -0.126 4.126 17 H 0.129 0.871 18 C -0.150 4.150 19 C 0.034 3.966 20 H 0.081 0.919 21 C -0.165 4.165 22 N -0.339 5.339 23 C -0.355 4.355 24 H 0.089 0.911 25 C -0.256 4.256 26 N -0.597 5.597 27 Si 0.792 3.208 28 H -0.195 1.195 29 H -0.228 1.228 30 H -0.214 1.214 31 C 0.065 3.935 32 H 0.128 0.872 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.060 0.940 39 H 0.106 0.894 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.251 0.749 43 H 0.086 0.914 44 H 0.123 0.877 45 H 0.080 0.920 46 H 0.126 0.874 47 H 0.107 0.893 48 H 0.039 0.961 49 H 0.052 0.948 50 H 0.023 0.977 51 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges 2.589 18.555 12.254 22.386 hybrid contribution -0.069 -1.336 -1.672 2.141 sum 2.520 17.219 10.582 20.367 Atomic orbital electron populations 1.20347 0.83495 1.04375 1.05301 1.25124 0.99664 0.85913 1.00063 1.73593 0.89421 1.23507 1.21334 1.84474 1.21213 1.22437 1.67898 1.25004 0.97245 0.83428 0.96623 1.20069 0.86481 0.97575 0.99866 1.21895 1.00518 1.03411 0.94747 1.21878 1.00348 1.03308 0.94331 1.21912 0.93914 0.94568 1.17276 1.17146 0.76318 0.84354 0.84100 1.90918 1.51722 1.69041 1.33247 1.45925 1.69239 1.11343 1.07854 1.20931 0.95560 0.78750 0.99741 0.93056 1.21912 1.01051 0.95231 0.95685 1.22792 0.96874 0.95890 0.97034 0.87080 1.22959 0.94835 1.01806 0.95377 1.21867 0.93297 0.89939 0.91527 0.91913 1.22442 0.95370 0.98619 1.00059 1.44857 1.17067 1.63098 1.08876 1.19336 1.01286 1.27013 0.87913 0.91139 1.25420 0.96741 1.01894 1.01580 1.70154 1.08410 1.44855 1.36331 0.85236 0.77223 0.77374 0.80993 1.19546 1.22781 1.21363 1.21025 0.88376 0.95788 0.88315 0.87197 0.88680 0.90878 0.89595 0.90306 0.89094 0.94043 0.89352 0.90655 0.91625 0.74882 0.91407 0.87703 0.91978 0.87446 0.89272 0.96060 0.94787 0.97655 0.98034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.55 10.49 71.24 0.75 -0.80 16 2 C 0.05 1.40 7.59 45.16 0.34 1.75 16 3 N -0.37 -9.66 12.01 -44.77 -0.54 -10.20 16 4 O 0.10 2.42 11.06 76.99 0.85 3.27 16 5 C 0.04 1.00 6.06 25.48 0.15 1.15 16 6 C -0.02 -0.40 3.33 -11.54 -0.04 -0.44 16 7 C -0.15 -2.68 9.18 71.98 0.66 -2.02 16 8 C -0.14 -1.86 9.18 71.98 0.66 -1.20 16 9 C -0.27 -7.68 6.24 -18.75 -0.12 -7.80 16 10 C 0.60 20.68 7.25 86.65 0.63 21.30 16 11 O -0.57 -27.19 16.77 -4.07 -0.07 -27.25 16 12 N -0.69 -19.66 5.07 -445.79 -2.26 -21.92 16 13 C 0.15 5.34 2.07 45.00 0.09 5.44 16 14 H 0.05 2.53 5.39 -2.39 -0.01 2.52 16 15 C -0.10 -2.69 4.95 30.93 0.15 -2.54 16 16 C -0.11 -3.40 4.33 -9.05 -0.04 -3.44 16 17 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 18 C -0.11 -3.28 6.18 32.17 0.20 -3.08 16 19 C 0.14 5.45 4.30 45.79 0.20 5.64 16 20 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 21 C -0.12 -4.34 5.27 30.89 0.16 -4.18 16 22 N -0.61 -31.37 2.43 -664.43 -1.61 -32.98 16 23 C -0.23 -13.25 10.29 84.03 0.87 -12.39 16 24 H 0.07 4.09 7.83 -2.91 -0.02 4.06 16 25 C -0.06 -3.82 5.49 84.86 0.47 -3.35 16 26 N -0.95 -59.11 10.35 21.65 0.22 -58.88 16 27 Si 0.96 49.20 29.55 68.60 2.03 51.22 16 28 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 29 H -0.30 -15.66 7.11 99.48 0.71 -14.95 16 30 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 31 C 0.19 9.14 4.10 86.85 0.36 9.49 16 32 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.07 1.66 8.14 -2.39 -0.02 1.65 16 35 H 0.09 2.07 7.71 -2.38 -0.02 2.05 16 36 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 37 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 38 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 41 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.41 8.16 8.58 -92.71 -0.80 7.37 16 43 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.10 1.87 7.98 -2.39 -0.02 1.85 16 45 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.11 2.23 7.75 -2.39 -0.02 2.21 16 47 H 0.09 2.33 8.00 -2.39 -0.02 2.31 16 48 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.24 14.81 8.31 -92.70 -0.77 14.04 16 50 H 0.01 0.30 6.15 -2.39 -0.01 0.28 16 51 H 0.00 0.08 7.40 -2.39 -0.02 0.06 16 Total: -1.00 -81.16 403.94 4.26 -76.91 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.14 Total: 16.30 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 5.49 Total: 3.54 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -4.19 Total: -123.98 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: 0.78 Total: -23.99 kcal Atomic # 14 Polarization: 49.20 SS G_CDS: 2.03 Total: 51.22 kcal Total: -81.16 4.26 -76.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047092925.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.246 kcal (2) G-P(sol) polarization free energy of solvation -81.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.908 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds