Wall clock time and date at job start Wed Apr 1 2020 04:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35321 * 126.66662 * 2 1 4 4 C 1.42277 * 103.91798 * 180.09098 * 3 2 1 5 5 C 1.48333 * 126.93139 * 179.90999 * 4 3 2 6 6 O 1.21497 * 120.00462 * 6.48407 * 5 4 3 7 7 N 1.34785 * 119.99828 * 186.47817 * 5 4 3 8 8 C 1.46928 * 120.62977 * 356.69600 * 7 5 4 9 9 C 1.53189 * 108.77778 * 126.38392 * 8 7 5 10 10 C 1.53048 * 109.30556 * 54.63532 * 9 8 7 11 11 C 1.53035 * 109.54062 * 298.63126 * 10 9 8 12 12 H 1.08997 * 109.49429 * 301.38437 * 11 10 9 13 13 C 1.52996 * 109.49805 * 181.31697 * 11 10 9 14 14 C 1.53043 * 109.46306 * 180.02562 * 13 11 10 15 15 C 1.53188 * 109.31550 * 178.61928 * 14 13 11 16 16 N 1.46924 * 108.77899 * 54.63207 * 15 14 13 17 17 C 1.36932 * 120.62846 * 126.36757 * 16 15 14 18 18 H 1.07999 * 120.00033 * 213.33258 * 17 16 15 19 19 C 1.38810 * 120.00289 * 33.34096 * 17 16 15 20 20 N 1.31622 * 119.99879 * 14.62387 * 19 17 16 21 21 Si 1.86802 * 120.00410 * 194.63505 * 19 17 16 22 22 H 1.48499 * 109.46615 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47169 * 119.99332 * 21 19 17 24 24 H 1.48502 * 109.47020 * 239.99495 * 21 19 17 25 25 C 1.46931 * 118.73944 * 306.39736 * 16 15 14 26 26 C 1.53050 * 109.45904 * 60.00083 * 13 11 10 27 27 C 1.46916 * 120.63189 * 176.68934 * 7 5 4 28 28 N 1.30980 * 106.12514 * 359.64821 * 4 3 2 29 29 O 1.20904 * 111.44117 * 0.22804 * 28 4 3 30 30 H 1.08997 * 109.47195 * 180.28674 * 1 2 3 31 31 H 1.09004 * 109.46700 * 300.28457 * 1 2 3 32 32 H 1.09001 * 109.47212 * 60.28510 * 1 2 3 33 33 H 1.07998 * 128.03908 * 359.96606 * 3 2 1 34 34 H 1.09009 * 109.58691 * 6.60006 * 8 7 5 35 35 H 1.08997 * 109.58595 * 246.17855 * 8 7 5 36 36 H 1.08994 * 109.50235 * 294.68765 * 9 8 7 37 37 H 1.08997 * 109.52562 * 174.59823 * 9 8 7 38 38 H 1.09000 * 109.45539 * 178.60975 * 10 9 8 39 39 H 1.09003 * 109.46028 * 58.65803 * 10 9 8 40 40 H 1.09001 * 109.46331 * 300.02983 * 13 11 10 41 41 H 1.08998 * 109.49216 * 298.57090 * 14 13 11 42 42 H 1.08999 * 109.49306 * 58.66271 * 14 13 11 43 43 H 1.09004 * 109.58483 * 294.84885 * 15 14 13 44 44 H 1.08992 * 109.58642 * 174.42380 * 15 14 13 45 45 H 0.96995 * 120.00010 * 180.02562 * 20 19 17 46 46 H 1.09006 * 109.58341 * 293.81897 * 25 16 15 47 47 H 1.09004 * 109.58600 * 173.39677 * 25 16 15 48 48 H 1.09003 * 109.49535 * 301.33805 * 26 13 11 49 49 H 1.09003 * 109.49417 * 61.39929 * 26 13 11 50 50 H 1.09004 * 109.58761 * 113.82517 * 27 7 5 51 51 H 1.09000 * 109.58869 * 353.40187 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5353 -0.0022 5 6 4.9075 1.2841 -0.0050 6 8 4.9045 2.4933 0.1132 7 7 6.0745 0.6230 -0.1385 8 6 6.0998 -0.8443 -0.2098 9 6 6.8632 -1.2637 -1.4700 10 6 8.2473 -0.6108 -1.4639 11 6 8.0950 0.9120 -1.4758 12 1 7.5332 1.2144 -2.3595 13 6 9.4791 1.5634 -1.5029 14 6 9.3259 3.0861 -1.5142 15 6 10.7135 3.7351 -1.5065 16 7 11.4928 3.1987 -2.6306 17 6 12.0823 4.0406 -3.5354 18 1 12.1722 3.7440 -4.5700 19 6 12.5644 5.2752 -3.1230 20 7 12.7220 5.5251 -1.8404 21 14 12.9895 6.5821 -4.3882 22 1 12.7250 6.0558 -5.7514 23 1 12.1564 7.7886 -4.1527 24 1 14.4254 6.9406 -4.2664 25 6 11.6269 1.7418 -2.7658 26 6 10.2287 1.1160 -2.7600 27 6 7.3455 1.3560 -0.2158 28 7 3.4760 -0.7658 0.0045 29 8 2.3072 -1.0750 0.0057 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5183 0.8875 32 1 -0.3634 0.5094 -0.8925 33 1 2.0301 2.1272 -0.0005 34 1 5.0796 -1.2255 -0.2568 35 1 6.6012 -1.2443 0.6714 36 1 6.3125 -0.9408 -2.3534 37 1 6.9725 -2.3481 -1.4856 38 1 8.8019 -0.9272 -2.3473 39 1 8.7883 -0.9146 -0.5677 40 1 10.0402 1.2610 -0.6187 41 1 8.7867 3.3907 -2.4112 42 1 8.7713 3.4024 -0.6308 43 1 11.2192 3.5051 -0.5686 44 1 10.6124 4.8149 -1.6142 45 1 13.0586 6.3879 -1.5521 46 1 12.2071 1.3493 -1.9306 47 1 12.1287 1.5066 -3.7044 48 1 10.3170 0.0295 -2.7636 49 1 9.6805 1.4394 -3.6449 50 1 7.9486 1.1354 0.6650 51 1 7.1474 2.4266 -0.2667 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047221969.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:22 Heat of formation + Delta-G solvation = 46.437323 kcal Electronic energy + Delta-G solvation = -31291.912159 eV Core-core repulsion = 27195.079053 eV Total energy + Delta-G solvation = -4096.833107 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.44774 -40.39550 -38.46103 -36.80859 -34.62170 -34.31568 -33.51265 -32.39156 -31.43943 -29.81984 -29.16544 -28.30961 -26.40931 -25.31313 -24.17265 -23.16046 -22.92713 -21.86724 -21.30661 -20.05893 -19.36591 -18.99373 -18.20980 -17.73647 -17.10487 -16.66775 -16.04898 -15.35058 -14.79583 -14.71825 -14.59508 -14.22632 -14.09524 -13.93870 -13.79024 -13.66007 -13.51289 -13.39110 -13.26409 -12.97217 -12.94648 -12.73178 -12.25699 -12.12227 -11.80558 -11.40947 -11.35338 -10.98219 -10.92719 -10.80896 -10.75695 -10.61726 -10.54134 -10.40526 -10.21269 -10.08049 -10.05176 -9.83449 -9.79880 -9.39126 -9.22931 -8.74705 -8.42324 -6.52007 -5.73554 -3.21059 0.75064 1.31538 2.44181 2.69060 2.93072 3.39774 3.47398 3.49771 3.56949 4.03275 4.51628 4.53498 4.53761 4.73373 4.77907 4.83882 4.88016 4.89078 4.98652 5.08185 5.20489 5.27703 5.40727 5.44674 5.47718 5.54410 5.58457 5.64044 5.71968 5.76006 5.82170 5.86242 5.96179 6.02139 6.11034 6.15403 6.26550 6.34422 6.43319 6.47640 6.61985 6.71623 6.80023 6.89456 6.95169 7.08324 7.12942 7.44305 7.61915 7.70599 7.85996 7.89130 8.54718 9.28430 9.90635 10.51133 11.34609 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019871 B = 0.002234 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.779598 B =12529.620442 C =13371.269003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.028 4.028 3 C -0.186 4.186 4 C -0.011 4.011 5 C 0.592 3.408 6 O -0.521 6.521 7 N -0.592 5.592 8 C 0.075 3.925 9 C -0.131 4.131 10 C -0.118 4.118 11 C -0.094 4.094 12 H 0.071 0.929 13 C -0.069 4.069 14 C -0.138 4.138 15 C 0.175 3.825 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.062 0.938 19 C 0.005 3.995 20 N -0.901 5.901 21 Si 0.900 3.100 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.290 1.290 25 C 0.146 3.854 26 C -0.126 4.126 27 C 0.115 3.885 28 N -0.331 5.331 29 O 0.109 5.891 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.093 0.907 33 H 0.181 0.819 34 H 0.124 0.876 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.017 0.983 44 H 0.077 0.923 45 H 0.253 0.747 46 H 0.015 0.985 47 H 0.051 0.949 48 H 0.051 0.949 49 H 0.055 0.945 50 H 0.071 0.929 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.005 -16.368 5.171 29.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.092 4.092 3 C -0.208 4.208 4 C -0.170 4.170 5 C 0.377 3.623 6 O -0.396 6.396 7 N -0.325 5.325 8 C -0.047 4.047 9 C -0.169 4.169 10 C -0.156 4.156 11 C -0.114 4.114 12 H 0.089 0.911 13 C -0.088 4.088 14 C -0.177 4.177 15 C 0.049 3.951 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.079 0.921 19 C -0.194 4.194 20 N -0.545 5.545 21 Si 0.730 3.270 22 H -0.202 1.202 23 H -0.215 1.215 24 H -0.217 1.217 25 C 0.019 3.981 26 C -0.165 4.165 27 C -0.006 4.006 28 N -0.037 5.037 29 O 0.039 5.961 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.112 0.888 33 H 0.199 0.801 34 H 0.140 0.860 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.036 0.964 44 H 0.095 0.905 45 H 0.063 0.937 46 H 0.033 0.967 47 H 0.069 0.931 48 H 0.069 0.931 49 H 0.074 0.926 50 H 0.089 0.911 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -23.035 -16.548 5.319 28.857 hybrid contribution 0.046 1.416 -0.571 1.527 sum -22.989 -15.132 4.748 27.929 Atomic orbital electron populations 1.20400 0.83359 1.04957 1.04521 1.24497 0.96502 0.85380 1.02788 1.22450 0.89659 1.01695 1.07023 1.23574 0.96851 0.90005 1.06558 1.17008 0.81482 0.86194 0.77586 1.90821 1.86178 1.12769 1.49801 1.48021 1.06121 1.07838 1.70471 1.22610 1.04718 0.78925 0.98490 1.21894 0.96835 1.00540 0.97680 1.21676 0.96110 0.95056 1.02711 1.21600 0.97312 0.95046 0.97397 0.91080 1.21009 0.92934 0.96121 0.98715 1.22293 1.01026 0.94187 1.00233 1.20673 0.86454 0.98390 0.89544 1.43990 1.57877 0.99448 1.30118 1.19160 1.32204 0.97668 0.89319 0.92076 1.25187 0.98413 1.00023 0.95754 1.70030 1.48488 1.22613 1.13320 0.86259 0.77639 0.81957 0.81132 1.20235 1.21549 1.21710 1.20908 0.92770 0.85957 0.98452 1.22089 0.98915 0.98395 0.97135 1.21921 0.82256 0.98098 0.98364 1.73849 0.96698 1.15361 1.17783 1.84795 1.11438 1.33814 1.66017 0.89601 0.88820 0.88813 0.80139 0.85954 0.91296 0.91828 0.90753 0.90906 0.91796 0.91787 0.92767 0.93247 0.96446 0.90465 0.93731 0.96688 0.93056 0.93091 0.92580 0.91052 0.88236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.18 10.44 36.00 0.38 0.19 16 2 C -0.03 -0.20 7.47 -35.35 -0.26 -0.46 16 3 C -0.19 -1.71 10.93 -39.07 -0.43 -2.14 16 4 C -0.01 -0.14 6.94 -82.53 -0.57 -0.71 16 5 C 0.59 8.60 7.72 -12.10 -0.09 8.51 16 6 O -0.52 -9.09 16.38 5.37 0.09 -9.01 16 7 N -0.59 -7.87 2.97 -173.70 -0.52 -8.39 16 8 C 0.08 0.82 6.31 -3.71 -0.02 0.80 16 9 C -0.13 -1.34 6.08 -26.61 -0.16 -1.50 16 10 C -0.12 -1.36 4.85 -26.69 -0.13 -1.49 16 11 C -0.09 -1.31 1.92 -90.50 -0.17 -1.48 16 12 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 13 C -0.07 -1.13 1.74 -90.57 -0.16 -1.29 16 14 C -0.14 -2.70 5.05 -26.61 -0.13 -2.83 16 15 C 0.18 4.27 5.26 -3.71 -0.02 4.25 16 16 N -0.59 -15.17 2.96 -172.32 -0.51 -15.68 16 17 C -0.25 -7.14 9.53 -15.06 -0.14 -7.28 16 18 H 0.06 1.70 7.87 -52.49 -0.41 1.29 16 19 C 0.01 0.15 4.93 -17.43 -0.09 0.07 16 20 N -0.90 -26.81 11.45 55.49 0.64 -26.17 16 21 Si 0.90 22.18 29.58 -169.99 -5.03 17.15 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 C 0.15 3.11 6.52 -3.71 -0.02 3.09 16 26 C -0.13 -2.18 5.04 -26.61 -0.13 -2.32 16 27 C 0.11 1.61 5.18 -3.72 -0.02 1.59 16 28 N -0.33 -3.55 8.51 33.29 0.28 -3.26 16 29 O 0.11 0.95 11.18 17.24 0.19 1.14 16 30 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 33 H 0.18 1.42 8.06 -52.49 -0.42 1.00 16 34 H 0.12 1.32 3.79 -73.29 -0.28 1.04 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.84 6.33 -51.93 -0.33 0.51 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.89 6.50 -51.93 -0.34 0.56 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.08 2.12 6.40 -51.93 -0.33 1.79 16 45 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 48 H 0.05 0.75 6.33 -51.93 -0.33 0.42 16 49 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 50 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 51 H 0.10 1.60 5.61 -51.93 -0.29 1.30 16 LS Contribution 391.41 15.07 5.90 5.90 Total: -1.00 -33.08 391.41 -9.34 -42.42 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -8.20 Total: -1.12 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -2.19 Total: -2.99 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.11 Total: -53.50 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.28 Total: -7.86 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -33.08 -9.34 -42.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047221969.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.859 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds