Wall clock time and date at job start Wed Apr 1 2020 04:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35321 * 126.66662 * 2 1 4 4 C 1.42277 * 103.91798 * 180.09098 * 3 2 1 5 5 C 1.48333 * 126.93139 * 179.90999 * 4 3 2 6 6 O 1.21497 * 120.00462 * 6.48407 * 5 4 3 7 7 N 1.34785 * 119.99828 * 186.47817 * 5 4 3 8 8 C 1.46928 * 120.62977 * 356.69600 * 7 5 4 9 9 C 1.53189 * 108.77778 * 126.38392 * 8 7 5 10 10 C 1.53048 * 109.30556 * 54.63532 * 9 8 7 11 11 C 1.53035 * 109.54062 * 298.63126 * 10 9 8 12 12 H 1.08997 * 109.49429 * 301.38437 * 11 10 9 13 13 C 1.52996 * 109.49805 * 181.31697 * 11 10 9 14 14 C 1.53043 * 109.46306 * 180.02562 * 13 11 10 15 15 C 1.53188 * 109.31550 * 178.61928 * 14 13 11 16 16 N 1.46924 * 108.77899 * 54.63207 * 15 14 13 17 17 C 1.36932 * 120.62846 * 126.36757 * 16 15 14 18 18 H 1.07999 * 120.00033 * 213.33258 * 17 16 15 19 19 C 1.38810 * 120.00289 * 33.34096 * 17 16 15 20 20 N 1.31622 * 119.99879 * 14.62387 * 19 17 16 21 21 Si 1.86802 * 120.00410 * 194.63505 * 19 17 16 22 22 H 1.48499 * 109.46615 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47169 * 119.99332 * 21 19 17 24 24 H 1.48502 * 109.47020 * 239.99495 * 21 19 17 25 25 C 1.46931 * 118.73944 * 306.39736 * 16 15 14 26 26 C 1.53050 * 109.45904 * 60.00083 * 13 11 10 27 27 C 1.46916 * 120.63189 * 176.68934 * 7 5 4 28 28 N 1.30980 * 106.12514 * 359.64821 * 4 3 2 29 29 O 1.20904 * 111.44117 * 0.22804 * 28 4 3 30 30 H 1.08997 * 109.47195 * 180.28674 * 1 2 3 31 31 H 1.09004 * 109.46700 * 300.28457 * 1 2 3 32 32 H 1.09001 * 109.47212 * 60.28510 * 1 2 3 33 33 H 1.07998 * 128.03908 * 359.96606 * 3 2 1 34 34 H 1.09009 * 109.58691 * 6.60006 * 8 7 5 35 35 H 1.08997 * 109.58595 * 246.17855 * 8 7 5 36 36 H 1.08994 * 109.50235 * 294.68765 * 9 8 7 37 37 H 1.08997 * 109.52562 * 174.59823 * 9 8 7 38 38 H 1.09000 * 109.45539 * 178.60975 * 10 9 8 39 39 H 1.09003 * 109.46028 * 58.65803 * 10 9 8 40 40 H 1.09001 * 109.46331 * 300.02983 * 13 11 10 41 41 H 1.08998 * 109.49216 * 298.57090 * 14 13 11 42 42 H 1.08999 * 109.49306 * 58.66271 * 14 13 11 43 43 H 1.09004 * 109.58483 * 294.84885 * 15 14 13 44 44 H 1.08992 * 109.58642 * 174.42380 * 15 14 13 45 45 H 0.96995 * 120.00010 * 180.02562 * 20 19 17 46 46 H 1.09006 * 109.58341 * 293.81897 * 25 16 15 47 47 H 1.09004 * 109.58600 * 173.39677 * 25 16 15 48 48 H 1.09003 * 109.49535 * 301.33805 * 26 13 11 49 49 H 1.09003 * 109.49417 * 61.39929 * 26 13 11 50 50 H 1.09004 * 109.58761 * 113.82517 * 27 7 5 51 51 H 1.09000 * 109.58869 * 353.40187 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5353 -0.0022 5 6 4.9075 1.2841 -0.0050 6 8 4.9045 2.4933 0.1132 7 7 6.0745 0.6230 -0.1385 8 6 6.0998 -0.8443 -0.2098 9 6 6.8632 -1.2637 -1.4700 10 6 8.2473 -0.6108 -1.4639 11 6 8.0950 0.9120 -1.4758 12 1 7.5332 1.2144 -2.3595 13 6 9.4791 1.5634 -1.5029 14 6 9.3259 3.0861 -1.5142 15 6 10.7135 3.7351 -1.5065 16 7 11.4928 3.1987 -2.6306 17 6 12.0823 4.0406 -3.5354 18 1 12.1722 3.7440 -4.5700 19 6 12.5644 5.2752 -3.1230 20 7 12.7220 5.5251 -1.8404 21 14 12.9895 6.5821 -4.3882 22 1 12.7250 6.0558 -5.7514 23 1 12.1564 7.7886 -4.1527 24 1 14.4254 6.9406 -4.2664 25 6 11.6269 1.7418 -2.7658 26 6 10.2287 1.1160 -2.7600 27 6 7.3455 1.3560 -0.2158 28 7 3.4760 -0.7658 0.0045 29 8 2.3072 -1.0750 0.0057 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3633 0.5183 0.8875 32 1 -0.3634 0.5094 -0.8925 33 1 2.0301 2.1272 -0.0005 34 1 5.0796 -1.2255 -0.2568 35 1 6.6012 -1.2443 0.6714 36 1 6.3125 -0.9408 -2.3534 37 1 6.9725 -2.3481 -1.4856 38 1 8.8019 -0.9272 -2.3473 39 1 8.7883 -0.9146 -0.5677 40 1 10.0402 1.2610 -0.6187 41 1 8.7867 3.3907 -2.4112 42 1 8.7713 3.4024 -0.6308 43 1 11.2192 3.5051 -0.5686 44 1 10.6124 4.8149 -1.6142 45 1 13.0586 6.3879 -1.5521 46 1 12.2071 1.3493 -1.9306 47 1 12.1287 1.5066 -3.7044 48 1 10.3170 0.0295 -2.7636 49 1 9.6805 1.4394 -3.6449 50 1 7.9486 1.1354 0.6650 51 1 7.1474 2.4266 -0.2667 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047221969.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:21 Heat of formation + Delta-G solvation = 27.644389 kcal Electronic energy + Delta-G solvation = -31292.727082 eV Core-core repulsion = 27195.079053 eV Total energy + Delta-G solvation = -4097.648029 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -46.18844 -41.48664 -39.83234 -38.20259 -35.87560 -35.17731 -34.44972 -33.61271 -33.00142 -31.50715 -30.70043 -28.76392 -27.54080 -26.92762 -25.29042 -24.52828 -23.88887 -23.24435 -22.66825 -21.26514 -20.74664 -20.16601 -18.94984 -18.68468 -18.53936 -17.97434 -17.18524 -16.79811 -16.42697 -15.80915 -15.66608 -15.53679 -15.32282 -15.02318 -14.91872 -14.73214 -14.55771 -14.46969 -14.26458 -14.09592 -13.96577 -13.85999 -13.65266 -13.29464 -13.06188 -12.86514 -12.74526 -12.55296 -12.47549 -12.28026 -12.07619 -11.97870 -11.85293 -11.68706 -11.62721 -11.59875 -11.49987 -11.23533 -10.92023 -10.84378 -10.57643 -10.41376 -9.81910 -8.61300 -7.89097 -5.40488 -0.04960 0.63433 1.42444 1.44051 1.54954 1.56932 1.92254 2.01279 2.48324 2.71134 3.25223 3.36054 3.62303 3.70191 3.73109 3.81206 3.87994 3.97382 4.02527 4.17596 4.21149 4.27234 4.34122 4.40978 4.51380 4.56973 4.59211 4.73879 4.75114 4.78263 4.79219 4.81799 4.83600 4.86881 4.94896 5.00272 5.04240 5.07889 5.09402 5.25617 5.26956 5.32333 5.37300 5.39536 5.42772 5.46728 5.53470 5.64744 5.75649 6.09997 6.40425 6.72116 7.01756 7.14409 7.85062 8.39685 9.16594 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019871 B = 0.002234 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.779598 B =12529.620442 C =13371.269003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.003 4.003 3 C -0.207 4.207 4 C -0.039 4.039 5 C 0.585 3.415 6 O -0.564 6.564 7 N -0.591 5.591 8 C 0.072 3.928 9 C -0.124 4.124 10 C -0.114 4.114 11 C -0.081 4.081 12 H 0.057 0.943 13 C -0.060 4.060 14 C -0.125 4.125 15 C 0.183 3.817 16 N -0.611 5.611 17 C -0.265 4.265 18 H 0.062 0.938 19 C -0.050 4.050 20 N -0.934 5.934 21 Si 0.967 3.033 22 H -0.265 1.265 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.139 3.861 26 C -0.112 4.112 27 C 0.116 3.884 28 N -0.338 5.338 29 O 0.118 5.882 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.187 0.813 34 H 0.127 0.873 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.059 0.941 43 H -0.003 1.003 44 H 0.038 0.962 45 H 0.250 0.750 46 H 0.014 0.986 47 H 0.051 0.949 48 H 0.089 0.911 49 H 0.047 0.953 50 H 0.081 0.919 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.117 -19.223 4.646 32.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.066 4.066 3 C -0.230 4.230 4 C -0.195 4.195 5 C 0.372 3.628 6 O -0.442 6.442 7 N -0.323 5.323 8 C -0.050 4.050 9 C -0.162 4.162 10 C -0.151 4.151 11 C -0.100 4.100 12 H 0.076 0.924 13 C -0.079 4.079 14 C -0.164 4.164 15 C 0.057 3.943 16 N -0.335 5.335 17 C -0.395 4.395 18 H 0.080 0.920 19 C -0.246 4.246 20 N -0.580 5.580 21 Si 0.794 3.206 22 H -0.190 1.190 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.014 3.986 26 C -0.151 4.151 27 C -0.006 4.006 28 N -0.042 5.042 29 O 0.046 5.954 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.128 0.872 33 H 0.204 0.796 34 H 0.144 0.856 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.077 0.923 43 H 0.015 0.985 44 H 0.057 0.943 45 H 0.059 0.941 46 H 0.032 0.968 47 H 0.069 0.931 48 H 0.107 0.893 49 H 0.066 0.934 50 H 0.099 0.901 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -25.137 -19.464 4.779 32.149 hybrid contribution 0.632 2.244 -0.379 2.362 sum -24.505 -17.219 4.400 30.271 Atomic orbital electron populations 1.20697 0.79777 1.06663 1.06037 1.25190 0.97951 0.83765 0.99720 1.22650 0.89049 1.02834 1.08446 1.23391 0.96554 0.90768 1.08832 1.17421 0.82599 0.85975 0.76840 1.90782 1.86952 1.14589 1.51909 1.48125 1.05479 1.08926 1.69733 1.22816 1.05459 0.77166 0.99543 1.21863 0.95544 1.02055 0.96745 1.21661 0.97279 0.92547 1.03643 1.21405 0.94964 0.96999 0.96624 0.92413 1.20906 0.94752 0.93635 0.98642 1.22085 0.97612 0.96566 1.00091 1.20461 0.88791 0.96585 0.88461 1.44269 1.58175 1.01206 1.29826 1.19480 1.31662 0.98459 0.89916 0.92043 1.25974 0.98930 1.02102 0.97563 1.70180 1.49789 1.22844 1.15162 0.85223 0.77062 0.79008 0.79266 1.18973 1.21750 1.21560 1.21101 0.95453 0.83695 0.98327 1.21945 0.95930 1.00290 0.96956 1.21792 0.83005 0.96899 0.98903 1.73794 0.97748 1.14608 1.18033 1.84765 1.11090 1.34359 1.65224 0.87809 0.87114 0.87196 0.79566 0.85582 0.90000 0.92673 0.87943 0.90096 0.90650 0.91367 0.94020 0.92262 0.98460 0.94344 0.94129 0.96788 0.93055 0.89270 0.93370 0.90120 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.10 10.44 71.23 0.74 0.65 16 2 C 0.00 -0.03 7.47 25.01 0.19 0.15 16 3 C -0.21 -3.65 10.93 22.60 0.25 -3.41 16 4 C -0.04 -0.91 6.94 42.96 0.30 -0.61 16 5 C 0.58 17.39 7.72 86.93 0.67 18.06 16 6 O -0.56 -20.72 16.38 -3.71 -0.06 -20.78 16 7 N -0.59 -15.50 2.97 -821.76 -2.44 -17.94 16 8 C 0.07 1.42 6.31 86.36 0.55 1.96 16 9 C -0.12 -2.15 6.08 30.67 0.19 -1.97 16 10 C -0.11 -2.26 4.85 30.62 0.15 -2.11 16 11 C -0.08 -2.13 1.92 -10.72 -0.02 -2.15 16 12 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 13 C -0.06 -1.94 1.74 -10.76 -0.02 -1.95 16 14 C -0.12 -5.00 5.05 30.67 0.15 -4.84 16 15 C 0.18 9.32 5.26 86.36 0.45 9.77 16 16 N -0.61 -32.08 2.96 -699.10 -2.07 -34.15 16 17 C -0.26 -15.21 9.53 84.03 0.80 -14.41 16 18 H 0.06 3.46 7.87 -2.91 -0.02 3.43 16 19 C -0.05 -2.91 4.93 84.86 0.42 -2.49 16 20 N -0.93 -57.65 11.45 21.65 0.25 -57.40 16 21 Si 0.97 46.60 29.58 68.60 2.03 48.63 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 23 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 C 0.14 5.91 6.52 86.36 0.56 6.47 16 26 C -0.11 -3.70 5.04 30.67 0.15 -3.55 16 27 C 0.12 3.24 5.18 86.36 0.45 3.68 16 28 N -0.34 -6.78 8.51 -49.52 -0.42 -7.20 16 29 O 0.12 1.80 11.18 71.86 0.80 2.60 16 30 H 0.10 -0.16 8.14 -2.39 -0.02 -0.18 16 31 H 0.11 -0.13 8.14 -2.38 -0.02 -0.15 16 32 H 0.11 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.19 2.91 8.06 -2.91 -0.02 2.89 16 34 H 0.13 2.49 3.79 -44.57 -0.17 2.32 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.08 1.52 6.33 -2.39 -0.02 1.50 16 39 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.06 2.24 6.50 -2.39 -0.02 2.22 16 43 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 44 H 0.04 2.22 6.40 -2.39 -0.02 2.21 16 45 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 46 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 47 H 0.05 2.14 7.93 -2.39 -0.02 2.12 16 48 H 0.09 2.31 6.33 -2.39 -0.02 2.29 16 49 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 51 H 0.07 2.44 5.61 -2.39 -0.01 2.43 16 Total: -1.00 -75.74 391.41 4.84 -70.91 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.77 Total: 12.09 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 5.98 Total: 3.25 kcal Atomic # 7 Polarization: -112.01 SS G_CDS: -4.69 Total: -116.69 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.74 Total: -18.18 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -75.74 4.84 -70.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047221969.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.553 kcal (2) G-P(sol) polarization free energy of solvation -75.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds