Wall clock time and date at job start Wed Apr 1 2020 05:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41265 * 126.70416 * 2 1 4 4 C 1.36823 * 103.84767 * 180.02562 * 3 2 1 5 5 C 1.47509 * 126.94326 * 180.02562 * 4 3 2 6 6 O 1.21586 * 119.99900 * 353.61667 * 5 4 3 7 7 N 1.34775 * 120.00117 * 173.62049 * 5 4 3 8 8 C 1.46930 * 120.63054 * 354.59463 * 7 5 4 9 9 C 1.53187 * 108.77578 * 233.62798 * 8 7 5 10 10 C 1.53035 * 109.34154 * 305.38308 * 9 8 7 11 11 C 1.53034 * 109.53968 * 61.31702 * 10 9 8 12 12 H 1.08999 * 109.50019 * 58.64917 * 11 10 9 13 13 C 1.52999 * 109.49692 * 178.71858 * 11 10 9 14 14 C 1.53045 * 109.46162 * 179.97438 * 13 11 10 15 15 C 1.53191 * 109.31171 * 181.37162 * 14 13 11 16 16 N 1.46931 * 108.77423 * 305.36307 * 15 14 13 17 17 C 1.36935 * 120.62846 * 233.59057 * 16 15 14 18 18 H 1.07997 * 120.00429 * 19.30789 * 17 16 15 19 19 C 1.38812 * 120.00092 * 199.31975 * 17 16 15 20 20 N 1.31618 * 119.99956 * 34.38870 * 19 17 16 21 21 Si 1.86800 * 120.00013 * 214.39983 * 19 17 16 22 22 H 1.48498 * 109.47162 * 179.97438 * 21 19 17 23 23 H 1.48496 * 109.47551 * 59.99197 * 21 19 17 24 24 H 1.48504 * 109.46726 * 299.98678 * 21 19 17 25 25 C 1.46925 * 118.73877 * 53.86325 * 16 15 14 26 26 C 1.53044 * 109.44778 * 299.99233 * 13 11 10 27 27 C 1.46928 * 120.63163 * 174.61571 * 7 5 4 28 28 O 1.34638 * 106.11212 * 0.25436 * 4 3 2 29 29 N 1.20891 * 111.46945 * 359.53093 * 28 4 3 30 30 H 1.09004 * 109.46958 * 90.00918 * 1 2 3 31 31 H 1.09003 * 109.47035 * 210.00764 * 1 2 3 32 32 H 1.08998 * 109.47371 * 330.00882 * 1 2 3 33 33 H 1.08004 * 128.07610 * 0.02877 * 3 2 1 34 34 H 1.09000 * 109.58262 * 353.41813 * 8 7 5 35 35 H 1.09007 * 109.58649 * 113.69830 * 8 7 5 36 36 H 1.09001 * 109.49660 * 65.32183 * 9 8 7 37 37 H 1.09000 * 109.49526 * 185.37640 * 9 8 7 38 38 H 1.09001 * 109.42902 * 301.30704 * 10 9 8 39 39 H 1.09003 * 109.48386 * 181.35389 * 10 9 8 40 40 H 1.09000 * 109.46316 * 59.95723 * 13 11 10 41 41 H 1.08997 * 109.49448 * 61.41725 * 14 13 11 42 42 H 1.08999 * 109.51933 * 301.33899 * 14 13 11 43 43 H 1.09004 * 109.58589 * 185.58133 * 15 14 13 44 44 H 1.08994 * 109.58834 * 65.15013 * 15 14 13 45 45 H 0.97006 * 120.00114 * 5.85394 * 20 19 17 46 46 H 1.08994 * 109.58469 * 65.92381 * 25 16 15 47 47 H 1.08998 * 109.58364 * 186.35140 * 25 16 15 48 48 H 1.08998 * 109.49906 * 298.57461 * 26 13 11 49 49 H 1.09005 * 109.49591 * 58.67385 * 26 13 11 50 50 H 1.08996 * 109.58541 * 6.58176 * 27 7 5 51 51 H 1.08995 * 109.58521 * 246.15811 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6011 -0.0006 5 6 4.8870 1.3431 -0.0003 6 8 4.8860 2.5534 -0.1166 7 7 6.0529 0.6795 0.1287 8 6 6.0665 -0.7667 0.3880 9 6 6.9211 -1.0368 1.6303 10 6 8.3081 -0.4203 1.4352 11 6 8.1750 1.0941 1.2597 12 1 7.6872 1.5205 2.1363 13 6 9.5645 1.7134 1.0967 14 6 9.4304 3.2278 0.9207 15 6 10.8208 3.8399 0.7235 16 7 11.6786 3.4365 1.8461 17 6 12.3472 4.3753 2.5856 18 1 12.0256 5.4061 2.5679 19 6 13.4385 4.0020 3.3581 20 7 14.2441 3.0481 2.9416 21 14 13.7635 4.8534 4.9887 22 1 14.9796 4.2754 5.6151 23 1 12.6008 4.6554 5.8910 24 1 13.9685 6.3057 4.7566 25 6 11.8103 2.0064 2.1562 26 6 10.4042 1.4160 2.3412 27 6 7.3346 1.3885 0.0132 28 8 3.4540 -0.7359 -0.0066 29 7 2.2848 -1.0433 -0.0004 30 1 -0.3633 -0.0002 -1.0277 31 1 -0.3633 -0.8899 0.5140 32 1 -0.3634 0.8900 0.5137 33 1 2.0678 2.1747 0.0004 34 1 5.0487 -1.1163 0.5615 35 1 6.4906 -1.2879 -0.4703 36 1 6.4448 -0.5910 2.5035 37 1 7.0180 -2.1124 1.7783 38 1 8.7740 -0.8492 0.5480 39 1 8.9261 -0.6319 2.3078 40 1 10.0516 1.2870 0.2197 41 1 8.9662 3.6574 1.8083 42 1 8.8125 3.4397 0.0481 43 1 10.7411 4.9267 0.6967 44 1 11.2494 3.4798 -0.2117 45 1 14.1259 2.6647 2.0584 46 1 12.3179 1.4998 1.3354 47 1 12.3837 1.8831 3.0749 48 1 9.9305 1.8633 3.2151 49 1 10.4798 0.3375 2.4799 50 1 7.1536 2.4608 -0.0607 51 1 7.8644 1.0433 -0.8746 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047224897.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:52 Heat of formation + Delta-G solvation = 44.303860 kcal Electronic energy + Delta-G solvation = -31355.309388 eV Core-core repulsion = 27258.383768 eV Total energy + Delta-G solvation = -4096.925620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -45.43919 -40.54265 -38.63769 -37.06871 -35.38721 -34.39891 -32.78182 -32.38208 -31.35258 -30.15125 -29.26795 -28.85296 -26.33554 -25.25315 -23.87209 -23.20294 -23.11873 -21.95758 -21.38821 -20.30687 -19.72974 -19.13023 -18.25214 -17.89262 -17.32888 -16.81827 -16.37724 -15.48908 -14.77678 -14.76493 -14.46492 -14.20764 -14.13016 -13.91153 -13.87679 -13.74782 -13.62730 -13.46336 -13.24848 -13.21879 -13.08455 -12.98101 -12.44046 -12.04019 -11.80090 -11.69879 -11.60019 -11.15405 -10.96493 -10.75437 -10.64592 -10.61365 -10.58024 -10.49932 -10.29075 -10.16369 -10.11496 -10.00433 -9.82797 -9.54613 -9.30321 -8.91257 -8.24134 -6.89664 -6.10218 -3.06459 0.41479 1.61952 2.15317 2.60113 2.78404 3.52914 3.57540 3.60423 3.74918 3.87727 4.34544 4.51344 4.61038 4.64969 4.71334 4.75043 4.81864 4.88634 4.98443 5.06100 5.10396 5.20584 5.25788 5.29707 5.36503 5.41099 5.48653 5.56305 5.60541 5.63154 5.65871 5.71039 5.87024 5.91199 5.94649 6.00478 6.15952 6.17565 6.26605 6.32394 6.43291 6.56880 6.60379 6.73772 6.78808 6.89120 6.91396 7.15774 7.25919 7.51998 7.74861 8.02442 8.58739 9.14300 9.90527 10.34479 11.20608 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024059 B = 0.002150 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.522038 B =13018.090090 C =13384.990894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.013 3.987 3 C -0.152 4.152 4 C -0.077 4.077 5 C 0.601 3.399 6 O -0.511 6.511 7 N -0.595 5.595 8 C 0.094 3.906 9 C -0.133 4.133 10 C -0.119 4.119 11 C -0.095 4.095 12 H 0.074 0.926 13 C -0.069 4.069 14 C -0.130 4.130 15 C 0.148 3.852 16 N -0.599 5.599 17 C -0.352 4.352 18 H 0.059 0.941 19 C -0.024 4.024 20 N -0.907 5.907 21 Si 1.051 2.949 22 H -0.287 1.287 23 H -0.295 1.295 24 H -0.294 1.294 25 C 0.147 3.853 26 C -0.128 4.128 27 C 0.115 3.885 28 O 0.114 5.886 29 N -0.351 5.351 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.184 0.816 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.013 0.987 45 H 0.268 0.732 46 H 0.013 0.987 47 H 0.083 0.917 48 H 0.057 0.943 49 H 0.052 0.948 50 H 0.100 0.900 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.669 -10.608 -6.831 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.145 4.145 3 C -0.174 4.174 4 C -0.143 4.143 5 C 0.386 3.614 6 O -0.387 6.387 7 N -0.327 5.327 8 C -0.028 4.028 9 C -0.171 4.171 10 C -0.156 4.156 11 C -0.114 4.114 12 H 0.092 0.908 13 C -0.088 4.088 14 C -0.169 4.169 15 C 0.022 3.978 16 N -0.323 5.323 17 C -0.481 4.481 18 H 0.077 0.923 19 C -0.226 4.226 20 N -0.546 5.546 21 Si 0.881 3.119 22 H -0.212 1.212 23 H -0.222 1.222 24 H -0.221 1.221 25 C 0.021 3.979 26 C -0.167 4.167 27 C -0.006 4.006 28 O 0.044 5.956 29 N -0.055 5.055 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.104 0.896 33 H 0.201 0.799 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.031 0.969 45 H 0.078 0.922 46 H 0.031 0.969 47 H 0.101 0.899 48 H 0.076 0.924 49 H 0.071 0.929 50 H 0.118 0.882 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -23.879 -11.215 -5.547 26.958 hybrid contribution -1.100 0.788 -1.380 1.933 sum -24.979 -10.427 -6.927 27.940 Atomic orbital electron populations 1.20225 0.85202 1.04219 1.03766 1.23658 0.99398 0.88250 1.03171 1.22897 0.89934 1.01831 1.02764 1.24273 0.97378 0.83883 1.08718 1.16671 0.80949 0.85991 0.77831 1.90887 1.85503 1.11992 1.50345 1.48073 1.05786 1.09696 1.69098 1.22216 1.02242 0.79556 0.98822 1.21920 0.96374 1.01479 0.97355 1.21671 0.96098 0.94955 1.02896 1.21605 0.96542 0.95721 0.97580 0.90793 1.21012 0.92963 0.95735 0.99108 1.22107 0.99184 0.94970 1.00666 1.20850 0.89389 0.97498 0.90051 1.44195 1.53087 1.02025 1.32995 1.19960 1.11215 0.91646 1.25239 0.92327 1.25607 0.91689 1.00742 1.04557 1.70797 1.32853 1.30003 1.20990 0.83732 0.75786 0.75267 0.77162 1.21223 1.22221 1.22067 1.21065 0.92962 0.83955 0.99910 1.22200 0.98637 0.99075 0.96825 1.21958 0.81424 0.98706 0.98502 1.85091 1.20942 1.22218 1.67320 1.73720 0.89759 1.24638 1.17405 0.89807 0.90202 0.89615 0.79887 0.88543 0.90450 0.91464 0.90327 0.91639 0.90592 0.91800 0.92201 0.92960 0.92852 0.96889 0.92211 0.96924 0.89867 0.92403 0.92934 0.88186 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.47 36.01 0.38 0.00 16 2 C 0.01 0.11 7.31 -82.16 -0.60 -0.49 16 3 C -0.15 -1.38 10.92 -38.94 -0.43 -1.80 16 4 C -0.08 -0.81 6.92 -36.32 -0.25 -1.06 16 5 C 0.60 7.38 7.69 -12.48 -0.10 7.28 16 6 O -0.51 -7.77 16.34 5.29 0.09 -7.68 16 7 N -0.59 -6.53 2.97 -174.00 -0.52 -7.05 16 8 C 0.09 0.81 6.18 -3.71 -0.02 0.79 16 9 C -0.13 -1.15 6.08 -26.62 -0.16 -1.31 16 10 C -0.12 -1.23 4.85 -26.70 -0.13 -1.36 16 11 C -0.10 -1.18 1.92 -90.50 -0.17 -1.35 16 12 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 13 C -0.07 -1.06 1.74 -90.57 -0.16 -1.21 16 14 C -0.13 -2.22 5.05 -26.61 -0.13 -2.35 16 15 C 0.15 3.12 6.51 -3.71 -0.02 3.09 16 16 N -0.60 -14.95 2.93 -172.06 -0.50 -15.46 16 17 C -0.35 -9.89 9.47 -15.06 -0.14 -10.04 16 18 H 0.06 1.67 7.96 -52.49 -0.42 1.25 16 19 C -0.02 -0.68 4.50 -17.43 -0.08 -0.76 16 20 N -0.91 -27.04 12.24 55.49 0.68 -26.36 16 21 Si 1.05 25.35 30.03 -169.99 -5.11 20.25 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.15 3.38 4.88 -3.49 -0.02 3.37 16 26 C -0.13 -2.30 5.06 -26.38 -0.13 -2.43 16 27 C 0.12 1.36 5.20 -3.71 -0.02 1.34 16 28 O 0.11 1.14 7.88 15.56 0.12 1.27 16 29 N -0.35 -3.60 12.04 33.52 0.40 -3.20 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.18 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.10 0.81 4.16 -53.06 -0.22 0.59 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.84 6.33 -51.93 -0.33 0.51 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.05 0.78 6.50 -51.93 -0.34 0.44 16 43 H 0.05 1.13 7.89 -51.93 -0.41 0.72 16 44 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.27 8.06 7.25 -40.82 -0.30 7.77 16 46 H 0.01 0.30 8.08 -51.93 -0.42 -0.12 16 47 H 0.08 2.17 5.96 -51.93 -0.31 1.87 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 49 H 0.05 0.83 6.33 -51.93 -0.33 0.50 16 50 H 0.10 1.34 5.58 -51.93 -0.29 1.05 16 51 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 390.47 15.07 5.88 5.88 Total: -1.00 -32.34 390.47 -9.21 -41.55 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -8.07 Total: -0.90 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -2.19 Total: -8.31 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: 0.06 Total: -52.06 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: 0.21 Total: -6.41 kcal Atomic # 14 Polarization: 25.35 SS G_CDS: -5.11 Total: 20.25 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.34 -9.21 -41.55 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047224897.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.857 kcal (2) G-P(sol) polarization free energy of solvation -32.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds