Wall clock time and date at job start Wed Apr 1 2020 05:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41265 * 126.70416 * 2 1 4 4 C 1.36823 * 103.84767 * 180.02562 * 3 2 1 5 5 C 1.47509 * 126.94326 * 180.02562 * 4 3 2 6 6 O 1.21586 * 119.99900 * 353.61667 * 5 4 3 7 7 N 1.34775 * 120.00117 * 173.62049 * 5 4 3 8 8 C 1.46930 * 120.63054 * 354.59463 * 7 5 4 9 9 C 1.53187 * 108.77578 * 233.62798 * 8 7 5 10 10 C 1.53035 * 109.34154 * 305.38308 * 9 8 7 11 11 C 1.53034 * 109.53968 * 61.31702 * 10 9 8 12 12 H 1.08999 * 109.50019 * 58.64917 * 11 10 9 13 13 C 1.52999 * 109.49692 * 178.71858 * 11 10 9 14 14 C 1.53045 * 109.46162 * 179.97438 * 13 11 10 15 15 C 1.53191 * 109.31171 * 181.37162 * 14 13 11 16 16 N 1.46931 * 108.77423 * 305.36307 * 15 14 13 17 17 C 1.36935 * 120.62846 * 233.59057 * 16 15 14 18 18 H 1.07997 * 120.00429 * 19.30789 * 17 16 15 19 19 C 1.38812 * 120.00092 * 199.31975 * 17 16 15 20 20 N 1.31618 * 119.99956 * 34.38870 * 19 17 16 21 21 Si 1.86800 * 120.00013 * 214.39983 * 19 17 16 22 22 H 1.48498 * 109.47162 * 179.97438 * 21 19 17 23 23 H 1.48496 * 109.47551 * 59.99197 * 21 19 17 24 24 H 1.48504 * 109.46726 * 299.98678 * 21 19 17 25 25 C 1.46925 * 118.73877 * 53.86325 * 16 15 14 26 26 C 1.53044 * 109.44778 * 299.99233 * 13 11 10 27 27 C 1.46928 * 120.63163 * 174.61571 * 7 5 4 28 28 O 1.34638 * 106.11212 * 0.25436 * 4 3 2 29 29 N 1.20891 * 111.46945 * 359.53093 * 28 4 3 30 30 H 1.09004 * 109.46958 * 90.00918 * 1 2 3 31 31 H 1.09003 * 109.47035 * 210.00764 * 1 2 3 32 32 H 1.08998 * 109.47371 * 330.00882 * 1 2 3 33 33 H 1.08004 * 128.07610 * 0.02877 * 3 2 1 34 34 H 1.09000 * 109.58262 * 353.41813 * 8 7 5 35 35 H 1.09007 * 109.58649 * 113.69830 * 8 7 5 36 36 H 1.09001 * 109.49660 * 65.32183 * 9 8 7 37 37 H 1.09000 * 109.49526 * 185.37640 * 9 8 7 38 38 H 1.09001 * 109.42902 * 301.30704 * 10 9 8 39 39 H 1.09003 * 109.48386 * 181.35389 * 10 9 8 40 40 H 1.09000 * 109.46316 * 59.95723 * 13 11 10 41 41 H 1.08997 * 109.49448 * 61.41725 * 14 13 11 42 42 H 1.08999 * 109.51933 * 301.33899 * 14 13 11 43 43 H 1.09004 * 109.58589 * 185.58133 * 15 14 13 44 44 H 1.08994 * 109.58834 * 65.15013 * 15 14 13 45 45 H 0.97006 * 120.00114 * 5.85394 * 20 19 17 46 46 H 1.08994 * 109.58469 * 65.92381 * 25 16 15 47 47 H 1.08998 * 109.58364 * 186.35140 * 25 16 15 48 48 H 1.08998 * 109.49906 * 298.57461 * 26 13 11 49 49 H 1.09005 * 109.49591 * 58.67385 * 26 13 11 50 50 H 1.08996 * 109.58541 * 6.58176 * 27 7 5 51 51 H 1.08995 * 109.58521 * 246.15811 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6121 0.6011 -0.0006 5 6 4.8870 1.3431 -0.0003 6 8 4.8860 2.5534 -0.1166 7 7 6.0529 0.6795 0.1287 8 6 6.0665 -0.7667 0.3880 9 6 6.9211 -1.0368 1.6303 10 6 8.3081 -0.4203 1.4352 11 6 8.1750 1.0941 1.2597 12 1 7.6872 1.5205 2.1363 13 6 9.5645 1.7134 1.0967 14 6 9.4304 3.2278 0.9207 15 6 10.8208 3.8399 0.7235 16 7 11.6786 3.4365 1.8461 17 6 12.3472 4.3753 2.5856 18 1 12.0256 5.4061 2.5679 19 6 13.4385 4.0020 3.3581 20 7 14.2441 3.0481 2.9416 21 14 13.7635 4.8534 4.9887 22 1 14.9796 4.2754 5.6151 23 1 12.6008 4.6554 5.8910 24 1 13.9685 6.3057 4.7566 25 6 11.8103 2.0064 2.1562 26 6 10.4042 1.4160 2.3412 27 6 7.3346 1.3885 0.0132 28 8 3.4540 -0.7359 -0.0066 29 7 2.2848 -1.0433 -0.0004 30 1 -0.3633 -0.0002 -1.0277 31 1 -0.3633 -0.8899 0.5140 32 1 -0.3634 0.8900 0.5137 33 1 2.0678 2.1747 0.0004 34 1 5.0487 -1.1163 0.5615 35 1 6.4906 -1.2879 -0.4703 36 1 6.4448 -0.5910 2.5035 37 1 7.0180 -2.1124 1.7783 38 1 8.7740 -0.8492 0.5480 39 1 8.9261 -0.6319 2.3078 40 1 10.0516 1.2870 0.2197 41 1 8.9662 3.6574 1.8083 42 1 8.8125 3.4397 0.0481 43 1 10.7411 4.9267 0.6967 44 1 11.2494 3.4798 -0.2117 45 1 14.1259 2.6647 2.0584 46 1 12.3179 1.4998 1.3354 47 1 12.3837 1.8831 3.0749 48 1 9.9305 1.8633 3.2151 49 1 10.4798 0.3375 2.4799 50 1 7.1536 2.4608 -0.0607 51 1 7.8644 1.0433 -0.8746 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047224897.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:51 Heat of formation + Delta-G solvation = 26.087788 kcal Electronic energy + Delta-G solvation = -31356.099296 eV Core-core repulsion = 27258.383768 eV Total energy + Delta-G solvation = -4097.715529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.14147 -41.48600 -39.91608 -38.34533 -36.19341 -35.72592 -34.03692 -33.16636 -32.75780 -31.72649 -30.45915 -29.64956 -27.34138 -26.79842 -24.96600 -24.44176 -24.01348 -23.25129 -22.69106 -21.32488 -20.76268 -20.52128 -19.37564 -18.97707 -18.64633 -17.68619 -17.21746 -16.41983 -16.33327 -16.03434 -15.66552 -15.48340 -15.40756 -15.11492 -14.96332 -14.83244 -14.69454 -14.31762 -14.23134 -14.14504 -14.04470 -13.85967 -13.64891 -13.45171 -13.32103 -12.82297 -12.51451 -12.46202 -12.35561 -12.08421 -12.04024 -11.91697 -11.89317 -11.79866 -11.63359 -11.53800 -11.35053 -11.15350 -11.02560 -10.89724 -10.86108 -10.35905 -9.81266 -8.95079 -8.32449 -5.25582 -0.36680 0.96009 1.33966 1.57036 1.63528 1.73850 1.83425 1.98572 2.65767 3.02212 3.13176 3.15738 3.55884 3.61415 3.69571 3.77186 3.82495 3.90193 4.01020 4.12219 4.16537 4.27713 4.32318 4.37977 4.44018 4.54069 4.58021 4.62083 4.67461 4.68405 4.71206 4.74310 4.78805 4.83293 4.88622 4.93400 4.97249 5.04280 5.09551 5.17963 5.18285 5.23937 5.27775 5.31693 5.38083 5.40638 5.44098 5.64176 5.83337 6.04869 6.36792 6.66006 7.00610 7.04897 7.82301 8.24639 8.95889 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024059 B = 0.002150 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.522038 B =13018.090090 C =13384.990894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.017 3.983 3 C -0.149 4.149 4 C -0.091 4.091 5 C 0.599 3.401 6 O -0.549 6.549 7 N -0.592 5.592 8 C 0.093 3.907 9 C -0.127 4.127 10 C -0.117 4.117 11 C -0.083 4.083 12 H 0.058 0.942 13 C -0.060 4.060 14 C -0.118 4.118 15 C 0.143 3.857 16 N -0.618 5.618 17 C -0.361 4.361 18 H 0.048 0.952 19 C -0.074 4.074 20 N -0.929 5.929 21 Si 1.102 2.898 22 H -0.290 1.290 23 H -0.284 1.284 24 H -0.278 1.278 25 C 0.150 3.850 26 C -0.115 4.115 27 C 0.118 3.882 28 O 0.112 5.888 29 N -0.370 5.370 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.104 0.896 33 H 0.198 0.802 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.103 0.897 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.044 0.956 42 H 0.078 0.922 43 H 0.042 0.958 44 H 0.018 0.982 45 H 0.253 0.747 46 H 0.005 0.995 47 H 0.046 0.954 48 H 0.042 0.958 49 H 0.079 0.921 50 H 0.082 0.918 51 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.042 -11.964 -7.142 30.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.141 4.141 3 C -0.171 4.171 4 C -0.157 4.157 5 C 0.385 3.615 6 O -0.428 6.428 7 N -0.322 5.322 8 C -0.029 4.029 9 C -0.165 4.165 10 C -0.154 4.154 11 C -0.102 4.102 12 H 0.077 0.923 13 C -0.079 4.079 14 C -0.157 4.157 15 C 0.017 3.983 16 N -0.343 5.343 17 C -0.490 4.490 18 H 0.066 0.934 19 C -0.271 4.271 20 N -0.571 5.571 21 Si 0.928 3.072 22 H -0.216 1.216 23 H -0.211 1.211 24 H -0.204 1.204 25 C 0.025 3.975 26 C -0.153 4.153 27 C -0.004 4.004 28 O 0.044 5.956 29 N -0.076 5.076 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.123 0.877 33 H 0.215 0.785 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.061 0.939 44 H 0.035 0.965 45 H 0.062 0.938 46 H 0.023 0.977 47 H 0.065 0.935 48 H 0.061 0.939 49 H 0.098 0.902 50 H 0.100 0.900 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -26.272 -12.599 -5.876 29.723 hybrid contribution -0.401 1.218 -1.346 1.859 sum -26.673 -11.380 -7.222 29.885 Atomic orbital electron populations 1.20421 0.82674 1.05399 1.05001 1.24208 1.00895 0.87393 1.01564 1.23214 0.89584 1.02763 1.01522 1.24067 0.97084 0.84360 1.10157 1.16858 0.81679 0.85676 0.77258 1.90861 1.86150 1.13538 1.52265 1.48138 1.05145 1.10633 1.68327 1.22405 1.02773 0.78078 0.99619 1.21888 0.94964 1.02748 0.96883 1.21660 0.97321 0.93146 1.03304 1.21412 0.94302 0.97133 0.97365 0.92342 1.20908 0.94465 0.94602 0.97941 1.21962 0.96600 0.96009 1.01120 1.21022 0.90915 0.97303 0.89018 1.44456 1.53319 1.02405 1.34161 1.20163 1.11095 0.92001 1.25770 0.93414 1.26886 0.91735 1.01269 1.07168 1.70916 1.34135 1.31588 1.20437 0.83024 0.75686 0.75095 0.73438 1.21612 1.21066 1.20389 1.20990 0.95457 0.83371 0.97724 1.22031 0.95552 1.00153 0.97609 1.21845 0.81877 0.97999 0.98640 1.85076 1.21058 1.21767 1.67735 1.73705 0.90020 1.25430 1.18399 0.88427 0.89752 0.87722 0.78523 0.88122 0.88512 0.92399 0.87904 0.90291 0.91084 0.90881 0.93745 0.90325 0.93923 0.96453 0.93803 0.97671 0.93536 0.93878 0.90243 0.89969 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.47 71.24 0.75 0.20 16 2 C 0.02 0.26 7.31 43.55 0.32 0.58 16 3 C -0.15 -2.47 10.92 22.68 0.25 -2.22 16 4 C -0.09 -1.81 6.92 24.38 0.17 -1.64 16 5 C 0.60 14.20 7.69 86.69 0.67 14.86 16 6 O -0.55 -16.59 16.34 -3.99 -0.07 -16.65 16 7 N -0.59 -11.99 2.97 -822.69 -2.45 -14.43 16 8 C 0.09 1.36 6.18 86.36 0.53 1.89 16 9 C -0.13 -1.82 6.08 30.67 0.19 -1.64 16 10 C -0.12 -2.10 4.85 30.62 0.15 -1.95 16 11 C -0.08 -1.91 1.92 -10.72 -0.02 -1.93 16 12 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 13 C -0.06 -1.76 1.74 -10.76 -0.02 -1.77 16 14 C -0.12 -3.96 5.05 30.67 0.15 -3.81 16 15 C 0.14 6.05 6.51 86.36 0.56 6.62 16 16 N -0.62 -31.65 2.93 -698.27 -2.05 -33.70 16 17 C -0.36 -20.82 9.47 84.03 0.80 -20.02 16 18 H 0.05 2.80 7.96 -2.91 -0.02 2.77 16 19 C -0.07 -4.27 4.50 84.86 0.38 -3.89 16 20 N -0.93 -57.03 12.24 21.65 0.27 -56.77 16 21 Si 1.10 52.01 30.03 68.60 2.06 54.07 16 22 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 C 0.15 7.06 4.88 86.51 0.42 7.48 16 26 C -0.11 -4.06 5.06 30.82 0.16 -3.90 16 27 C 0.12 2.56 5.20 86.36 0.45 3.01 16 28 O 0.11 2.08 7.88 65.86 0.52 2.59 16 29 N -0.37 -6.97 12.04 -48.86 -0.59 -7.55 16 30 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.20 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.10 1.46 4.16 -20.29 -0.08 1.37 16 35 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.37 6.33 -2.39 -0.02 1.36 16 40 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.08 2.25 6.50 -2.39 -0.02 2.23 16 43 H 0.04 1.85 7.89 -2.39 -0.02 1.83 16 44 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.25 15.83 7.25 -92.70 -0.67 15.16 16 46 H 0.01 0.25 8.08 -2.39 -0.02 0.23 16 47 H 0.05 2.52 5.96 -2.39 -0.01 2.50 16 48 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 49 H 0.08 2.38 6.33 -2.38 -0.02 2.37 16 50 H 0.08 2.12 5.58 -2.39 -0.01 2.11 16 51 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -72.61 390.47 4.55 -68.05 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.95 Total: 12.52 kcal Atomic # 6 Polarization: -14.03 SS G_CDS: 5.90 Total: -8.13 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -4.81 Total: -112.45 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: 0.45 Total: -14.06 kcal Atomic # 14 Polarization: 52.01 SS G_CDS: 2.06 Total: 54.07 kcal Total: -72.61 4.55 -68.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047224897.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.142 kcal (2) G-P(sol) polarization free energy of solvation -72.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds