Wall clock time and date at job start Wed Apr 1 2020 05:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30015 * 127.33130 * 2 1 4 4 O 1.20658 * 112.30155 * 180.02562 * 3 2 1 5 5 C 1.33497 * 113.15373 * 359.72183 * 4 3 2 6 6 C 1.37356 * 106.34079 * 0.45012 * 5 4 3 7 7 C 1.47399 * 128.56270 * 179.85884 * 6 5 4 8 8 O 1.21613 * 119.99903 * 208.52834 * 7 6 5 9 9 N 1.34771 * 120.00067 * 28.53293 * 7 6 5 10 10 C 1.46925 * 120.63399 * 356.81326 * 9 7 6 11 11 C 1.53193 * 108.77859 * 126.36763 * 10 9 7 12 12 C 1.53039 * 109.33695 * 54.62337 * 11 10 9 13 13 C 1.53042 * 109.53741 * 298.68351 * 12 11 10 14 14 H 1.08998 * 109.49686 * 301.34957 * 13 12 11 15 15 C 1.53000 * 109.49404 * 181.28488 * 13 12 11 16 16 C 1.53051 * 109.45911 * 180.02562 * 15 13 12 17 17 C 1.53188 * 109.31131 * 178.62883 * 16 15 13 18 18 N 1.46925 * 108.77692 * 54.63657 * 17 16 15 19 19 C 1.36939 * 120.63241 * 126.36695 * 18 17 16 20 20 H 1.08002 * 119.99719 * 331.40161 * 19 18 17 21 21 C 1.38811 * 119.99744 * 151.39598 * 19 18 17 22 22 N 1.31613 * 120.00629 * 339.37053 * 21 19 18 23 23 Si 1.86801 * 119.99554 * 159.36356 * 21 19 18 24 24 H 1.48495 * 109.47079 * 180.02562 * 23 21 19 25 25 H 1.48502 * 109.47205 * 60.00264 * 23 21 19 26 26 H 1.48498 * 109.47371 * 300.00332 * 23 21 19 27 27 C 1.46925 * 118.73866 * 306.63716 * 18 17 16 28 28 C 1.52767 * 109.00528 * 53.31113 * 27 18 17 29 29 C 1.46933 * 120.63291 * 176.78986 * 9 7 6 30 30 H 1.09001 * 109.46665 * 269.95253 * 1 2 3 31 31 H 1.08996 * 109.47601 * 29.94969 * 1 2 3 32 32 H 1.08997 * 109.47044 * 149.95623 * 1 2 3 33 33 H 1.08002 * 126.82610 * 180.30800 * 5 4 3 34 34 H 1.09007 * 109.58595 * 246.16153 * 10 9 7 35 35 H 1.08999 * 109.58145 * 6.43990 * 10 9 7 36 36 H 1.09000 * 109.49329 * 174.58521 * 11 10 9 37 37 H 1.08995 * 109.49806 * 294.65803 * 11 10 9 38 38 H 1.08999 * 109.48571 * 178.64515 * 12 11 10 39 39 H 1.09003 * 109.43377 * 58.68517 * 12 11 10 40 40 H 1.09000 * 109.46129 * 300.03116 * 15 13 12 41 41 H 1.08999 * 109.49505 * 58.67157 * 16 15 13 42 42 H 1.09003 * 109.51885 * 298.59148 * 16 15 13 43 43 H 1.09000 * 109.58541 * 294.84388 * 17 16 15 44 44 H 1.09004 * 109.58173 * 174.42166 * 17 16 15 45 45 H 0.97002 * 119.99523 * 354.04963 * 22 21 19 46 46 H 1.08997 * 109.59159 * 173.14668 * 27 18 17 47 47 H 1.09001 * 109.58731 * 293.57575 * 27 18 17 48 48 H 1.09000 * 109.56081 * 185.55517 * 28 27 18 49 49 H 1.08997 * 109.35449 * 65.50061 * 28 27 18 50 50 H 1.09000 * 109.58498 * 113.83651 * 29 9 7 51 51 H 1.09000 * 109.58396 * 353.42008 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7209 -0.0005 5 6 3.6494 -0.6007 0.0050 6 6 2.3992 -1.1695 -0.0008 7 6 2.0402 -2.5991 -0.0011 8 8 0.9972 -2.9640 -0.5091 9 7 2.8677 -3.5018 0.5616 10 6 4.1627 -3.0861 1.1173 11 6 4.2580 -3.5758 2.5657 12 6 4.0119 -5.0857 2.6073 13 6 2.6057 -5.3897 2.0854 14 1 1.8701 -4.8657 2.6955 15 6 2.3490 -6.8963 2.1574 16 6 0.9429 -7.1995 1.6347 17 6 0.7021 -8.7117 1.6762 18 7 0.9554 -9.1936 3.0409 19 6 0.0088 -9.9221 3.7106 20 1 -1.0388 -9.7770 3.4918 21 6 0.3958 -10.8470 4.6706 22 7 1.6219 -11.3255 4.6671 23 14 -0.8236 -11.4123 5.9679 24 1 -0.1683 -12.3941 6.8688 25 1 -1.9906 -12.0490 5.3062 26 1 -1.2812 -10.2427 6.7603 27 6 2.2414 -8.8740 3.6756 28 6 2.4672 -7.3645 3.6096 29 6 2.4918 -4.9205 0.6316 30 1 -0.3633 -0.0009 1.0277 31 1 -0.3634 0.8904 -0.5130 32 1 -0.3633 -0.8896 -0.5145 33 1 4.5967 -1.1193 0.0104 34 1 4.9699 -3.5236 0.5297 35 1 4.2394 -1.9991 1.0911 36 1 5.2511 -3.3581 2.9587 37 1 3.5075 -3.0681 3.1715 38 1 4.1029 -5.4407 3.6338 39 1 4.7483 -5.5905 1.9820 40 1 3.0847 -7.4196 1.5466 41 1 0.8520 -6.8446 0.6081 42 1 0.2055 -6.6963 2.2602 43 1 1.3792 -9.2087 0.9815 44 1 -0.3304 -8.9250 1.3992 45 1 2.2286 -11.0993 3.9449 46 1 2.2244 -9.1943 4.7173 47 1 3.0466 -9.3845 3.1473 48 1 3.4613 -7.1273 3.9885 49 1 1.7157 -6.8600 4.2169 50 1 3.1626 -5.5077 0.0044 51 1 1.4650 -5.0438 0.2873 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047252932.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:56 Heat of formation + Delta-G solvation = 46.708514 kcal Electronic energy + Delta-G solvation = -31557.131912 eV Core-core repulsion = 27460.310565 eV Total energy + Delta-G solvation = -4096.821347 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.33399 -40.57644 -38.60793 -37.04479 -34.93454 -34.54727 -32.90038 -32.44246 -31.28135 -30.21727 -29.17534 -28.77460 -26.52114 -25.34068 -24.17638 -23.36333 -22.23396 -21.80513 -21.38555 -20.47584 -19.76479 -19.12239 -18.16725 -17.79291 -17.38533 -17.22878 -16.37899 -15.54085 -15.08375 -14.66241 -14.43770 -14.38023 -14.11876 -13.85413 -13.68998 -13.59612 -13.47479 -13.44986 -13.25679 -13.18916 -13.07951 -12.80475 -12.43970 -12.11600 -11.74394 -11.66639 -11.62971 -11.21509 -10.97692 -10.77277 -10.72141 -10.64886 -10.42741 -10.33166 -10.28425 -10.19675 -10.05039 -9.98834 -9.79244 -9.56239 -9.17343 -8.88928 -8.38913 -6.83636 -6.00754 -3.22223 0.65857 1.41827 2.30384 2.70088 2.84549 3.50562 3.53177 3.63332 3.71330 3.86815 4.16445 4.38136 4.44740 4.59858 4.61462 4.66014 4.80442 4.88093 4.97560 5.03344 5.17681 5.21679 5.24533 5.27699 5.36433 5.42225 5.43315 5.49605 5.57123 5.64076 5.70167 5.79498 5.81584 5.88494 5.92660 5.98198 6.14059 6.15057 6.25951 6.30251 6.42886 6.55936 6.58908 6.72151 6.78576 6.88559 7.01848 7.13176 7.24117 7.76430 7.82317 8.02960 8.61670 9.16144 9.88228 10.33195 11.26230 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021047 B = 0.002278 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.020276 B =12289.683650 C =12842.279373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.069 3.931 3 N -0.358 5.358 4 O 0.097 5.903 5 C -0.023 4.023 6 C -0.245 4.245 7 C 0.594 3.406 8 O -0.525 6.525 9 N -0.601 5.601 10 C 0.082 3.918 11 C -0.134 4.134 12 C -0.118 4.118 13 C -0.095 4.095 14 H 0.072 0.928 15 C -0.069 4.069 16 C -0.130 4.130 17 C 0.148 3.852 18 N -0.600 5.600 19 C -0.343 4.343 20 H 0.054 0.946 21 C -0.027 4.027 22 N -0.923 5.923 23 Si 1.067 2.933 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.294 1.294 27 C 0.149 3.851 28 C -0.129 4.129 29 C 0.118 3.882 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.235 0.765 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.014 0.986 44 H 0.053 0.947 45 H 0.269 0.731 46 H 0.079 0.921 47 H 0.014 0.986 48 H 0.052 0.948 49 H 0.056 0.944 50 H 0.070 0.930 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.542 22.358 -8.527 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 N -0.065 5.065 4 O 0.037 5.963 5 C -0.104 4.104 6 C -0.252 4.252 7 C 0.381 3.619 8 O -0.402 6.402 9 N -0.334 5.334 10 C -0.041 4.041 11 C -0.172 4.172 12 C -0.156 4.156 13 C -0.114 4.114 14 H 0.090 0.910 15 C -0.088 4.088 16 C -0.169 4.169 17 C 0.022 3.978 18 N -0.324 5.324 19 C -0.472 4.472 20 H 0.072 0.928 21 C -0.229 4.229 22 N -0.564 5.564 23 Si 0.897 3.103 24 H -0.211 1.211 25 H -0.220 1.220 26 H -0.221 1.221 27 C 0.023 3.977 28 C -0.168 4.168 29 C -0.003 4.003 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.116 0.884 33 H 0.251 0.749 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.032 0.968 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.032 0.968 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.088 0.912 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.593 22.510 -7.433 24.892 hybrid contribution 0.288 0.085 -1.367 1.400 sum 7.881 22.595 -8.800 25.497 Atomic orbital electron populations 1.20321 0.84816 1.04845 1.03991 1.24870 0.99004 0.86140 0.99354 1.73679 0.89261 1.23539 1.20022 1.84594 1.21567 1.23082 1.67041 1.26889 1.00407 0.83937 0.99204 1.22362 0.93006 0.95736 1.14100 1.16889 0.83500 0.83056 0.78457 1.90813 1.24284 1.79990 1.45148 1.47958 1.18695 1.08641 1.58064 1.22405 0.85182 1.00958 0.95524 1.21919 1.02482 0.97451 0.95386 1.21656 0.96813 0.94566 1.02522 1.21599 0.97273 0.97425 0.95121 0.90958 1.21007 0.97583 0.92240 0.97977 1.22110 0.96151 0.99414 0.99273 1.20884 0.98562 0.91028 0.87368 1.44102 1.16038 1.61718 1.10575 1.20013 0.88256 1.17285 1.21685 0.92784 1.25862 1.00702 0.94017 1.02286 1.70778 1.07515 1.42448 1.35697 0.83494 0.74500 0.76024 0.76318 1.21086 1.22014 1.22121 1.20883 0.87252 0.90457 0.99085 1.22078 0.99894 0.99982 0.94864 1.21869 1.02842 0.78284 0.97352 0.89732 0.90108 0.88397 0.74884 0.90526 0.89088 0.90482 0.91438 0.90656 0.91698 0.91811 0.92941 0.92334 0.96783 0.92836 0.91981 0.90232 0.96816 0.92944 0.92566 0.91169 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.41 36.01 0.37 -0.37 16 2 C 0.07 0.73 7.58 -79.77 -0.60 0.12 16 3 N -0.36 -3.79 12.01 34.78 0.42 -3.37 16 4 O 0.10 0.83 11.06 18.64 0.21 1.03 16 5 C -0.02 -0.15 10.14 30.41 0.31 0.16 16 6 C -0.24 -2.43 6.04 -102.90 -0.62 -3.05 16 7 C 0.59 7.11 7.68 -12.53 -0.10 7.02 16 8 O -0.53 -8.12 15.46 5.27 0.08 -8.03 16 9 N -0.60 -6.09 2.97 -174.04 -0.52 -6.61 16 10 C 0.08 0.53 5.73 -3.71 -0.02 0.51 16 11 C -0.13 -0.99 6.08 -26.61 -0.16 -1.15 16 12 C -0.12 -1.15 4.85 -26.69 -0.13 -1.28 16 13 C -0.09 -1.15 1.92 -90.50 -0.17 -1.32 16 14 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 15 C -0.07 -1.05 1.74 -90.57 -0.16 -1.20 16 16 C -0.13 -2.23 5.05 -26.61 -0.13 -2.36 16 17 C 0.15 3.12 6.52 -3.71 -0.02 3.10 16 18 N -0.60 -15.03 2.86 -172.58 -0.49 -15.53 16 19 C -0.34 -9.65 9.52 -15.06 -0.14 -9.79 16 20 H 0.05 1.53 7.91 -52.49 -0.42 1.12 16 21 C -0.03 -0.78 4.80 -17.43 -0.08 -0.87 16 22 N -0.92 -27.69 12.38 55.49 0.69 -27.00 16 23 Si 1.07 25.41 29.97 -169.99 -5.09 20.32 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.15 3.42 4.58 -3.93 -0.02 3.41 16 28 C -0.13 -2.29 5.03 -26.83 -0.13 -2.43 16 29 C 0.12 1.36 5.18 -3.71 -0.02 1.34 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 0.99 7.15 -51.93 -0.37 0.61 16 33 H 0.24 0.51 6.02 -52.49 -0.32 0.19 16 34 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.42 3.23 -51.93 -0.17 0.25 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.80 6.33 -51.93 -0.33 0.47 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.79 6.50 -51.93 -0.34 0.45 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.05 1.15 7.93 -51.93 -0.41 0.73 16 45 H 0.27 8.08 6.35 -40.82 -0.26 7.82 16 46 H 0.08 2.08 6.24 -51.93 -0.32 1.75 16 47 H 0.01 0.32 7.79 -51.93 -0.40 -0.08 16 48 H 0.05 0.81 6.33 -51.93 -0.33 0.49 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 50 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.10 1.35 5.61 -51.93 -0.29 1.06 16 LS Contribution 385.99 15.07 5.82 5.82 Total: -1.00 -33.90 385.99 -8.56 -42.46 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -7.82 Total: -0.92 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -1.84 Total: -8.17 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: 0.09 Total: -52.50 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: 0.29 Total: -7.00 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.09 Total: 20.32 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.90 -8.56 -42.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047252932.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.167 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds