Wall clock time and date at job start Wed Apr 1 2020 05:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30015 * 127.33130 * 2 1 4 4 O 1.20658 * 112.30155 * 180.02562 * 3 2 1 5 5 C 1.33497 * 113.15373 * 359.72183 * 4 3 2 6 6 C 1.37356 * 106.34079 * 0.45012 * 5 4 3 7 7 C 1.47399 * 128.56270 * 179.85884 * 6 5 4 8 8 O 1.21613 * 119.99903 * 208.52834 * 7 6 5 9 9 N 1.34771 * 120.00067 * 28.53293 * 7 6 5 10 10 C 1.46925 * 120.63399 * 356.81326 * 9 7 6 11 11 C 1.53193 * 108.77859 * 126.36763 * 10 9 7 12 12 C 1.53039 * 109.33695 * 54.62337 * 11 10 9 13 13 C 1.53042 * 109.53741 * 298.68351 * 12 11 10 14 14 H 1.08998 * 109.49686 * 301.34957 * 13 12 11 15 15 C 1.53000 * 109.49404 * 181.28488 * 13 12 11 16 16 C 1.53051 * 109.45911 * 180.02562 * 15 13 12 17 17 C 1.53188 * 109.31131 * 178.62883 * 16 15 13 18 18 N 1.46925 * 108.77692 * 54.63657 * 17 16 15 19 19 C 1.36939 * 120.63241 * 126.36695 * 18 17 16 20 20 H 1.08002 * 119.99719 * 331.40161 * 19 18 17 21 21 C 1.38811 * 119.99744 * 151.39598 * 19 18 17 22 22 N 1.31613 * 120.00629 * 339.37053 * 21 19 18 23 23 Si 1.86801 * 119.99554 * 159.36356 * 21 19 18 24 24 H 1.48495 * 109.47079 * 180.02562 * 23 21 19 25 25 H 1.48502 * 109.47205 * 60.00264 * 23 21 19 26 26 H 1.48498 * 109.47371 * 300.00332 * 23 21 19 27 27 C 1.46925 * 118.73866 * 306.63716 * 18 17 16 28 28 C 1.52767 * 109.00528 * 53.31113 * 27 18 17 29 29 C 1.46933 * 120.63291 * 176.78986 * 9 7 6 30 30 H 1.09001 * 109.46665 * 269.95253 * 1 2 3 31 31 H 1.08996 * 109.47601 * 29.94969 * 1 2 3 32 32 H 1.08997 * 109.47044 * 149.95623 * 1 2 3 33 33 H 1.08002 * 126.82610 * 180.30800 * 5 4 3 34 34 H 1.09007 * 109.58595 * 246.16153 * 10 9 7 35 35 H 1.08999 * 109.58145 * 6.43990 * 10 9 7 36 36 H 1.09000 * 109.49329 * 174.58521 * 11 10 9 37 37 H 1.08995 * 109.49806 * 294.65803 * 11 10 9 38 38 H 1.08999 * 109.48571 * 178.64515 * 12 11 10 39 39 H 1.09003 * 109.43377 * 58.68517 * 12 11 10 40 40 H 1.09000 * 109.46129 * 300.03116 * 15 13 12 41 41 H 1.08999 * 109.49505 * 58.67157 * 16 15 13 42 42 H 1.09003 * 109.51885 * 298.59148 * 16 15 13 43 43 H 1.09000 * 109.58541 * 294.84388 * 17 16 15 44 44 H 1.09004 * 109.58173 * 174.42166 * 17 16 15 45 45 H 0.97002 * 119.99523 * 354.04963 * 22 21 19 46 46 H 1.08997 * 109.59159 * 173.14668 * 27 18 17 47 47 H 1.09001 * 109.58731 * 293.57575 * 27 18 17 48 48 H 1.09000 * 109.56081 * 185.55517 * 28 27 18 49 49 H 1.08997 * 109.35449 * 65.50061 * 28 27 18 50 50 H 1.09000 * 109.58498 * 113.83651 * 29 9 7 51 51 H 1.09000 * 109.58396 * 353.42008 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7209 -0.0005 5 6 3.6494 -0.6007 0.0050 6 6 2.3992 -1.1695 -0.0008 7 6 2.0402 -2.5991 -0.0011 8 8 0.9972 -2.9640 -0.5091 9 7 2.8677 -3.5018 0.5616 10 6 4.1627 -3.0861 1.1173 11 6 4.2580 -3.5758 2.5657 12 6 4.0119 -5.0857 2.6073 13 6 2.6057 -5.3897 2.0854 14 1 1.8701 -4.8657 2.6955 15 6 2.3490 -6.8963 2.1574 16 6 0.9429 -7.1995 1.6347 17 6 0.7021 -8.7117 1.6762 18 7 0.9554 -9.1936 3.0409 19 6 0.0088 -9.9221 3.7106 20 1 -1.0388 -9.7770 3.4918 21 6 0.3958 -10.8470 4.6706 22 7 1.6219 -11.3255 4.6671 23 14 -0.8236 -11.4123 5.9679 24 1 -0.1683 -12.3941 6.8688 25 1 -1.9906 -12.0490 5.3062 26 1 -1.2812 -10.2427 6.7603 27 6 2.2414 -8.8740 3.6756 28 6 2.4672 -7.3645 3.6096 29 6 2.4918 -4.9205 0.6316 30 1 -0.3633 -0.0009 1.0277 31 1 -0.3634 0.8904 -0.5130 32 1 -0.3633 -0.8896 -0.5145 33 1 4.5967 -1.1193 0.0104 34 1 4.9699 -3.5236 0.5297 35 1 4.2394 -1.9991 1.0911 36 1 5.2511 -3.3581 2.9587 37 1 3.5075 -3.0681 3.1715 38 1 4.1029 -5.4407 3.6338 39 1 4.7483 -5.5905 1.9820 40 1 3.0847 -7.4196 1.5466 41 1 0.8520 -6.8446 0.6081 42 1 0.2055 -6.6963 2.2602 43 1 1.3792 -9.2087 0.9815 44 1 -0.3304 -8.9250 1.3992 45 1 2.2286 -11.0993 3.9449 46 1 2.2244 -9.1943 4.7173 47 1 3.0466 -9.3845 3.1473 48 1 3.4613 -7.1273 3.9885 49 1 1.7157 -6.8600 4.2169 50 1 3.1626 -5.5077 0.0044 51 1 1.4650 -5.0438 0.2873 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047252932.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:55 Heat of formation + Delta-G solvation = 26.449833 kcal Electronic energy + Delta-G solvation = -31558.010394 eV Core-core repulsion = 27460.310565 eV Total energy + Delta-G solvation = -4097.699829 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -46.03722 -41.45092 -39.89674 -38.26044 -36.04994 -35.55586 -34.12676 -33.20125 -32.65680 -31.78811 -30.39310 -29.75446 -27.39842 -26.91193 -25.15669 -24.61106 -23.64178 -22.82357 -22.30536 -21.55309 -20.77880 -20.52325 -19.42380 -18.87231 -18.47186 -17.97296 -17.26812 -16.38588 -16.30392 -16.02466 -15.77368 -15.53143 -15.39891 -15.23085 -14.97079 -14.78368 -14.66355 -14.35722 -14.26720 -14.06972 -13.95118 -13.78629 -13.66640 -13.44482 -13.25896 -12.85981 -12.54553 -12.42349 -12.35573 -12.07091 -12.05058 -11.91710 -11.86186 -11.73692 -11.50405 -11.48111 -11.27361 -11.02101 -10.99444 -10.88072 -10.68472 -10.51034 -9.71752 -8.92537 -8.21818 -5.43043 0.04147 0.67583 1.56023 1.56688 1.63621 1.82542 1.94997 2.21258 2.64218 2.93751 3.22988 3.24386 3.48144 3.54714 3.67557 3.75123 3.78882 3.82851 4.03096 4.09864 4.14364 4.30051 4.32420 4.36650 4.40892 4.51114 4.52172 4.53233 4.56616 4.61818 4.67709 4.69115 4.75752 4.80362 4.85250 4.92177 4.98839 5.02488 5.07718 5.12355 5.17001 5.23093 5.26267 5.30214 5.38739 5.45052 5.46275 5.61993 5.81256 6.24768 6.40843 6.95950 7.07719 7.15615 7.78383 8.22225 9.00996 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021047 B = 0.002278 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.020276 B =12289.683650 C =12842.279373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.050 3.950 3 N -0.377 5.377 4 O 0.102 5.898 5 C 0.017 3.983 6 C -0.275 4.275 7 C 0.591 3.409 8 O -0.574 6.574 9 N -0.597 5.597 10 C 0.077 3.923 11 C -0.129 4.129 12 C -0.118 4.118 13 C -0.082 4.082 14 H 0.053 0.947 15 C -0.060 4.060 16 C -0.118 4.118 17 C 0.143 3.857 18 N -0.621 5.621 19 C -0.354 4.354 20 H 0.045 0.955 21 C -0.078 4.078 22 N -0.946 5.946 23 Si 1.116 2.884 24 H -0.289 1.289 25 H -0.277 1.277 26 H -0.281 1.281 27 C 0.153 3.847 28 C -0.115 4.115 29 C 0.121 3.879 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.284 0.716 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.041 0.959 43 H 0.018 0.982 44 H 0.041 0.959 45 H 0.256 0.744 46 H 0.042 0.958 47 H 0.006 0.994 48 H 0.081 0.919 49 H 0.040 0.960 50 H 0.086 0.914 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.039 24.383 -8.848 28.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 N -0.084 5.084 4 O 0.043 5.957 5 C -0.064 4.064 6 C -0.283 4.283 7 C 0.380 3.620 8 O -0.454 6.454 9 N -0.328 5.328 10 C -0.044 4.044 11 C -0.167 4.167 12 C -0.155 4.155 13 C -0.101 4.101 14 H 0.071 0.929 15 C -0.079 4.079 16 C -0.157 4.157 17 C 0.018 3.982 18 N -0.346 5.346 19 C -0.484 4.484 20 H 0.063 0.937 21 C -0.273 4.273 22 N -0.589 5.589 23 Si 0.940 3.060 24 H -0.214 1.214 25 H -0.203 1.203 26 H -0.207 1.207 27 C 0.028 3.972 28 C -0.153 4.153 29 C -0.001 4.001 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.100 0.900 33 H 0.299 0.701 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.060 0.940 43 H 0.036 0.964 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.024 0.976 48 H 0.099 0.901 49 H 0.059 0.941 50 H 0.104 0.896 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.117 24.577 -7.766 27.690 hybrid contribution -0.451 -0.561 -1.309 1.494 sum 9.666 24.016 -9.075 27.433 Atomic orbital electron populations 1.20298 0.84730 1.04566 1.04266 1.25128 0.99641 0.86726 0.99736 1.73683 0.89932 1.23868 1.20910 1.84573 1.20698 1.24013 1.66460 1.27649 1.00810 0.82806 0.95181 1.22211 0.94423 0.94541 1.17093 1.17171 0.82978 0.83975 0.77898 1.90786 1.26374 1.80823 1.47434 1.48010 1.19714 1.07669 1.57420 1.22752 0.83938 1.02495 0.95203 1.21904 1.03775 0.95164 0.95891 1.21658 0.94995 0.96794 1.02052 1.21397 0.98773 0.94363 0.95590 0.92872 1.20911 0.96320 0.94821 0.95898 1.21959 0.97198 0.95967 1.00576 1.21031 0.97966 0.93670 0.85579 1.44367 1.16173 1.61869 1.12171 1.20247 0.88653 1.17367 1.22085 0.93732 1.27215 1.01589 0.94263 1.04272 1.70888 1.08297 1.44016 1.35704 0.82839 0.72994 0.75994 0.74150 1.21441 1.20310 1.20732 1.20785 0.86162 0.93779 0.96469 1.21900 1.00941 0.95728 0.96781 1.21688 1.01940 0.79680 0.96763 0.89200 0.89002 0.89980 0.70142 0.87407 0.87007 0.87417 0.92836 0.91499 0.90201 0.90916 0.90560 0.94020 0.96426 0.94023 0.93369 0.93974 0.97613 0.90084 0.94148 0.89552 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 10.41 71.24 0.74 -0.76 16 2 C 0.05 1.01 7.58 45.15 0.34 1.35 16 3 N -0.38 -7.37 12.01 -44.78 -0.54 -7.91 16 4 O 0.10 1.43 11.06 76.95 0.85 2.28 16 5 C 0.02 0.15 10.14 67.61 0.69 0.84 16 6 C -0.28 -4.92 6.04 -18.75 -0.11 -5.03 16 7 C 0.59 13.45 7.68 86.66 0.67 14.11 16 8 O -0.57 -18.06 15.46 -4.07 -0.06 -18.12 16 9 N -0.60 -10.50 2.97 -822.80 -2.45 -12.94 16 10 C 0.08 0.62 5.73 86.36 0.49 1.11 16 11 C -0.13 -1.34 6.08 30.67 0.19 -1.15 16 12 C -0.12 -1.88 4.85 30.62 0.15 -1.73 16 13 C -0.08 -1.83 1.92 -10.72 -0.02 -1.85 16 14 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 15 C -0.06 -1.77 1.74 -10.76 -0.02 -1.78 16 16 C -0.12 -4.04 5.05 30.67 0.15 -3.89 16 17 C 0.14 6.15 6.52 86.36 0.56 6.72 16 18 N -0.62 -32.05 2.86 -699.92 -2.01 -34.05 16 19 C -0.35 -20.49 9.52 84.03 0.80 -19.69 16 20 H 0.04 2.61 7.91 -2.91 -0.02 2.59 16 21 C -0.08 -4.51 4.80 84.86 0.41 -4.11 16 22 N -0.95 -58.38 12.38 21.65 0.27 -58.11 16 23 Si 1.12 52.05 29.97 68.60 2.06 54.10 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 26 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 27 C 0.15 7.24 4.58 86.22 0.39 7.63 16 28 C -0.11 -4.04 5.03 30.53 0.15 -3.89 16 29 C 0.12 2.57 5.18 86.36 0.45 3.01 16 30 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.77 7.15 -2.39 -0.02 1.75 16 33 H 0.28 -0.61 6.02 -2.91 -0.02 -0.62 16 34 H 0.11 0.34 8.14 -2.38 -0.02 0.32 16 35 H 0.11 0.39 3.23 -2.39 -0.01 0.38 16 36 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 38 H 0.07 1.21 6.33 -2.39 -0.02 1.19 16 39 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.08 2.26 6.50 -2.39 -0.02 2.25 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.04 1.84 7.93 -2.39 -0.02 1.82 16 45 H 0.26 15.98 6.35 -92.71 -0.59 15.39 16 46 H 0.04 2.28 6.24 -2.39 -0.01 2.27 16 47 H 0.01 0.28 7.79 -2.39 -0.02 0.27 16 48 H 0.08 2.39 6.33 -2.39 -0.02 2.38 16 49 H 0.04 1.54 8.14 -2.39 -0.02 1.53 16 50 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.07 1.95 5.61 -2.39 -0.01 1.93 16 Total: -1.00 -79.19 385.99 5.28 -73.91 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.12 Total: 9.94 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 6.03 Total: -9.09 kcal Atomic # 7 Polarization: -108.29 SS G_CDS: -4.72 Total: -113.01 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: 0.79 Total: -15.84 kcal Atomic # 14 Polarization: 52.05 SS G_CDS: 2.06 Total: 54.10 kcal Total: -79.19 5.28 -73.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047252932.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.357 kcal (2) G-P(sol) polarization free energy of solvation -79.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds