Wall clock time and date at job start Wed Apr 1 2020 04:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30181 * 126.80657 * 2 1 4 4 O 1.20920 * 111.60631 * 179.97438 * 3 2 1 5 5 C 1.34044 * 111.56606 * 359.76743 * 4 3 2 6 6 C 1.50698 * 126.77248 * 180.28791 * 5 4 3 7 7 C 1.35446 * 106.44659 * 0.37430 * 5 4 3 8 8 C 1.50703 * 128.00659 * 179.90758 * 7 5 4 9 9 H 1.09005 * 109.46974 * 5.56411 * 8 7 5 10 10 C 1.52997 * 109.47404 * 245.56071 * 8 7 5 11 11 C 1.53001 * 109.46705 * 125.55663 * 8 7 5 12 12 C 1.50703 * 109.47055 * 185.00136 * 11 8 7 13 13 O 1.21281 * 119.99871 * 0.02562 * 12 11 8 14 14 N 1.34770 * 120.00154 * 180.02562 * 12 11 8 15 15 C 1.46667 * 125.33755 * 359.97438 * 14 12 11 16 16 C 1.53729 * 107.94394 * 180.54937 * 15 14 12 17 17 H 1.08998 * 113.06052 * 139.99913 * 16 15 14 18 18 C 1.53698 * 109.34085 * 266.25408 * 16 15 14 19 19 N 1.46632 * 108.00855 * 127.55594 * 18 16 15 20 20 C 1.36945 * 125.32730 * 180.81549 * 19 18 16 21 21 H 1.07998 * 119.99503 * 359.72318 * 20 19 18 22 22 C 1.38810 * 119.99616 * 179.97438 * 20 19 18 23 23 N 1.31613 * 120.00706 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99359 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47465 * 59.99814 * 24 22 20 26 26 H 1.48505 * 109.47009 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47281 * 299.99589 * 24 22 20 28 28 C 1.46740 * 109.34561 * 1.07664 * 19 18 16 29 29 C 1.54107 * 106.62821 * 341.30041 * 28 19 18 30 30 H 1.09000 * 113.48824 * 151.37686 * 29 28 19 31 31 C 1.46779 * 125.34094 * 180.02562 * 14 12 11 32 32 H 1.08996 * 109.46934 * 269.40388 * 1 2 3 33 33 H 1.08998 * 109.46931 * 29.39875 * 1 2 3 34 34 H 1.08996 * 109.47053 * 149.39967 * 1 2 3 35 35 H 1.08997 * 109.47286 * 263.97402 * 6 5 4 36 36 H 1.08998 * 109.47360 * 23.97918 * 6 5 4 37 37 H 1.09006 * 109.47097 * 143.97736 * 6 5 4 38 38 H 1.08997 * 109.47127 * 300.51232 * 10 8 7 39 39 H 1.09000 * 109.47021 * 60.51577 * 10 8 7 40 40 H 1.08995 * 109.47018 * 180.51220 * 10 8 7 41 41 H 1.09004 * 109.46813 * 65.00778 * 11 8 7 42 42 H 1.08998 * 109.47684 * 305.00277 * 11 8 7 43 43 H 1.08998 * 109.77398 * 60.92906 * 15 14 12 44 44 H 1.09002 * 109.77414 * 300.16946 * 15 14 12 45 45 H 1.08997 * 109.75830 * 7.90770 * 18 16 15 46 46 H 1.09000 * 109.75761 * 247.19426 * 18 16 15 47 47 H 0.97001 * 120.00445 * 180.02562 * 23 22 20 48 48 H 1.09002 * 110.00732 * 100.73463 * 28 19 18 49 49 H 1.09000 * 110.01397 * 222.10663 * 28 19 18 50 50 H 1.09005 * 110.02867 * 42.18584 * 31 14 12 51 51 H 1.08997 * 110.02647 * 280.77598 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6024 -0.6069 0.0060 6 6 4.9021 -1.3696 0.0143 7 6 2.3539 -1.1321 0.0006 8 6 1.9590 -2.5864 0.0014 9 1 2.8503 -3.2049 0.1069 10 6 1.2561 -2.9248 -1.3148 11 6 1.0098 -2.8563 1.1706 12 6 0.7119 -4.3318 1.2456 13 8 1.2102 -5.0925 0.4431 14 7 -0.1081 -4.8058 2.2042 15 6 -0.7712 -3.9948 3.2307 16 6 -1.5963 -4.9387 4.1203 17 1 -1.5490 -4.6789 5.1778 18 6 -3.0386 -5.0039 3.5930 19 7 -3.3920 -6.4155 3.4127 20 6 -4.5922 -6.8774 2.9420 21 1 -5.3716 -6.1797 2.6738 22 6 -4.8086 -8.2426 2.8146 23 7 -3.8603 -9.0931 3.1457 24 14 -6.4455 -8.8727 2.1719 25 1 -6.6770 -8.3435 0.8039 26 1 -6.4229 -10.3570 2.1308 27 1 -7.5377 -8.4185 3.0697 28 6 -2.2606 -7.2559 3.8214 29 6 -1.0149 -6.3487 3.8216 30 1 -0.2514 -6.6593 4.5349 31 6 -0.4769 -6.2149 2.3855 32 1 -0.3633 -0.0107 1.0276 33 1 -0.3633 0.8953 -0.5045 34 1 -0.3633 -0.8845 -0.5231 35 1 5.1653 -1.6503 -1.0055 36 1 5.6889 -0.7422 0.4330 37 1 4.7922 -2.2682 0.6215 38 1 0.3698 -2.3000 -1.4245 39 1 1.9355 -2.7412 -2.1471 40 1 0.9624 -3.9745 -1.3104 41 1 0.0813 -2.3055 1.0195 42 1 1.4772 -2.5324 2.1005 43 1 -1.4288 -3.2660 2.7569 44 1 -0.0233 -3.4798 3.8338 45 1 -3.1058 -4.4822 2.6383 46 1 -3.7153 -4.5436 4.3129 47 1 -4.0114 -10.0471 3.0563 48 1 -2.4346 -7.6553 4.8206 49 1 -2.1264 -8.0719 3.1113 50 1 0.3993 -6.8500 2.2543 51 1 -1.2506 -6.4933 1.6700 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048900331.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:42 Heat of formation + Delta-G solvation = 44.152373 kcal Electronic energy + Delta-G solvation = -31483.079512 eV Core-core repulsion = 27386.147323 eV Total energy + Delta-G solvation = -4096.932189 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.13115 -40.31524 -38.61605 -36.60499 -35.00748 -34.00852 -32.68616 -32.29207 -30.32916 -29.73206 -29.01744 -28.13841 -27.79041 -25.49313 -25.41289 -23.98943 -22.84280 -20.90195 -20.34864 -20.14415 -19.41178 -18.98298 -17.85034 -17.31955 -16.93491 -16.55591 -16.06846 -15.51221 -15.01374 -14.76651 -14.48263 -14.41898 -13.81109 -13.73142 -13.60184 -13.48855 -13.31484 -13.16435 -13.11410 -12.97178 -12.71314 -12.63279 -12.39908 -12.03375 -11.96096 -11.67170 -11.56439 -11.55268 -11.41654 -11.35151 -10.97920 -10.83127 -10.72577 -10.42472 -10.18466 -10.05278 -10.01114 -9.89147 -9.66314 -9.59052 -9.32132 -8.66495 -8.36461 -6.88690 -5.72798 -3.11962 1.24062 1.98212 2.75622 2.87803 3.19083 3.38004 3.42596 3.43655 3.95476 4.21748 4.42368 4.44142 4.49803 4.74713 4.80640 4.84719 4.90918 5.04750 5.07044 5.08329 5.15470 5.20905 5.24715 5.29227 5.39540 5.44113 5.45453 5.48198 5.52997 5.62584 5.65102 5.72212 5.73713 5.77837 5.85224 5.87842 5.91048 6.09776 6.15302 6.27795 6.33029 6.36515 6.51351 6.62420 6.70612 6.77884 7.40245 7.57664 7.74186 7.77737 8.08119 8.27851 8.31637 9.17692 9.78201 10.40761 11.33538 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019275 B = 0.002333 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.332353 B =12000.243350 C =12211.641547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.028 3.972 3 N -0.369 5.369 4 O 0.094 5.906 5 C -0.032 4.032 6 C -0.074 4.074 7 C -0.191 4.191 8 C 0.006 3.994 9 H 0.091 0.909 10 C -0.151 4.151 11 C -0.132 4.132 12 C 0.526 3.474 13 O -0.543 6.543 14 N -0.609 5.609 15 C 0.111 3.889 16 C -0.110 4.110 17 H 0.095 0.905 18 C 0.144 3.856 19 N -0.600 5.600 20 C -0.227 4.227 21 H 0.077 0.923 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.914 3.086 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.171 3.829 29 C -0.122 4.122 30 H 0.086 0.914 31 C 0.120 3.880 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.024 0.976 46 H 0.022 0.978 47 H 0.254 0.746 48 H 0.020 0.980 49 H 0.098 0.902 50 H 0.066 0.934 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.247 15.880 -2.876 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.131 4.131 3 N -0.076 5.076 4 O 0.030 5.970 5 C -0.095 4.095 6 C -0.132 4.132 7 C -0.195 4.195 8 C -0.013 4.013 9 H 0.109 0.891 10 C -0.208 4.208 11 C -0.172 4.172 12 C 0.315 3.685 13 O -0.421 6.421 14 N -0.342 5.342 15 C -0.012 4.012 16 C -0.129 4.129 17 H 0.113 0.887 18 C 0.017 3.983 19 N -0.327 5.327 20 C -0.355 4.355 21 H 0.095 0.905 22 C -0.204 4.204 23 N -0.570 5.570 24 Si 0.744 3.256 25 H -0.211 1.211 26 H -0.215 1.215 27 H -0.212 1.212 28 C 0.045 3.955 29 C -0.143 4.143 30 H 0.104 0.896 31 C -0.002 4.002 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.109 0.891 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.041 0.959 46 H 0.040 0.960 47 H 0.064 0.936 48 H 0.038 0.962 49 H 0.116 0.884 50 H 0.085 0.915 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 15.232 16.621 -3.418 22.803 hybrid contribution -1.053 -0.935 -0.093 1.411 sum 14.179 15.686 -3.511 21.434 Atomic orbital electron populations 1.20339 0.86100 1.04019 1.03598 1.23410 0.98855 0.88383 1.02478 1.73834 0.89303 1.23978 1.20437 1.84793 1.21653 1.22523 1.68065 1.24247 0.98225 0.83766 1.03303 1.20354 0.89971 0.98639 1.04218 1.20993 0.91554 0.97355 1.09556 1.19160 0.99067 0.87834 0.95237 0.89088 1.21982 0.99868 1.03783 0.95193 1.21748 1.01621 0.93589 1.00232 1.20122 0.78131 0.90338 0.79953 1.90663 1.51983 1.59467 1.40021 1.48374 1.46078 1.09640 1.30115 1.21913 0.95578 0.94065 0.89662 1.22760 0.96217 0.95145 0.98794 0.88683 1.21197 0.91560 0.88574 0.96921 1.44200 1.13280 0.99094 1.76086 1.18993 0.89849 0.90828 1.35860 0.90510 1.24784 0.98275 0.95784 1.01531 1.69833 1.31836 1.01560 1.53768 0.86164 0.82905 0.77754 0.78733 1.21138 1.21535 1.21193 1.21432 0.81751 0.92511 0.99773 1.23291 0.99743 0.96400 0.94840 0.89604 1.22011 0.99761 0.80826 0.97601 0.89940 0.90507 0.89588 0.89330 0.89896 0.88923 0.92941 0.92807 0.89609 0.88705 0.89090 0.91391 0.92027 0.95860 0.96004 0.93569 0.96219 0.88429 0.91513 0.90310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 9.01 36.00 0.32 -0.38 16 2 C 0.03 0.30 7.23 -82.10 -0.59 -0.30 16 3 N -0.37 -4.52 12.07 33.42 0.40 -4.11 16 4 O 0.09 1.05 11.20 17.17 0.19 1.24 16 5 C -0.03 -0.30 7.49 -35.31 -0.26 -0.56 16 6 C -0.07 -0.42 10.11 36.00 0.36 -0.05 16 7 C -0.19 -1.91 4.95 -104.42 -0.52 -2.43 16 8 C 0.01 0.07 2.35 -91.77 -0.22 -0.15 16 9 H 0.09 0.94 7.07 -51.93 -0.37 0.58 16 10 C -0.15 -1.65 8.92 37.16 0.33 -1.32 16 11 C -0.13 -1.38 4.11 -27.88 -0.11 -1.50 16 12 C 0.53 7.56 7.55 -10.99 -0.08 7.48 16 13 O -0.54 -9.44 14.25 5.56 0.08 -9.36 16 14 N -0.61 -9.11 3.31 -172.31 -0.57 -9.68 16 15 C 0.11 1.41 5.85 -3.57 -0.02 1.39 16 16 C -0.11 -1.68 4.01 -88.60 -0.36 -2.03 16 17 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 18 C 0.14 2.76 6.60 -3.61 -0.02 2.73 16 19 N -0.60 -14.55 3.37 -171.83 -0.58 -15.13 16 20 C -0.23 -6.12 10.25 -15.06 -0.15 -6.28 16 21 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 22 C -0.01 -0.21 5.48 -17.43 -0.10 -0.31 16 23 N -0.92 -26.14 10.15 55.49 0.56 -25.58 16 24 Si 0.91 21.70 29.55 -169.99 -5.02 16.67 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 28 C 0.17 3.89 4.84 -3.33 -0.02 3.87 16 29 C -0.12 -2.12 4.16 -88.27 -0.37 -2.49 16 30 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 31 C 0.12 2.11 6.12 -3.40 -0.02 2.09 16 32 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.68 5.49 -51.93 -0.29 0.40 16 35 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.47 7.57 -51.93 -0.39 0.08 16 38 H 0.05 0.53 6.00 -51.93 -0.31 0.22 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 1.15 5.94 -51.93 -0.31 0.84 16 41 H 0.09 0.90 6.22 -51.93 -0.32 0.58 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.80 7.44 -51.93 -0.39 0.41 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.02 0.45 7.29 -51.93 -0.38 0.08 16 46 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.10 2.53 5.99 -51.93 -0.31 2.22 16 50 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 51 H 0.08 1.66 7.72 -51.93 -0.40 1.26 16 LS Contribution 394.77 15.07 5.95 5.95 Total: -1.00 -31.95 394.77 -8.89 -40.84 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -8.08 Total: -0.59 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -1.82 Total: -0.24 kcal Atomic # 7 Polarization: -54.32 SS G_CDS: -0.18 Total: -54.51 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.27 Total: -8.12 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.95 -8.89 -40.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048900331.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.989 kcal (2) G-P(sol) polarization free energy of solvation -31.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds