Wall clock time and date at job start Wed Apr 1 2020 04:42:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 N 1.30176 * 126.80575 * 2 1
4 4 O 1.20917 * 111.60574 * 180.25004 * 3 2 1
5 5 C 1.34049 * 111.56384 * 359.74354 * 4 3 2
6 6 C 1.50700 * 126.76963 * 180.02562 * 5 4 3
7 7 C 1.35446 * 106.44615 * 0.02562 * 5 4 3
8 8 C 1.50698 * 128.00180 * 179.97438 * 7 5 4
9 9 H 1.09001 * 109.47612 * 359.97438 * 8 7 5
10 10 C 1.53006 * 109.47184 * 119.99936 * 8 7 5
11 11 C 1.52999 * 109.47150 * 239.99379 * 8 7 5
12 12 C 1.50700 * 109.47526 * 174.99982 * 11 8 7
13 13 O 1.21274 * 119.99793 * 0.02562 * 12 11 8
14 14 N 1.34774 * 119.99911 * 180.02562 * 12 11 8
15 15 C 1.46673 * 125.33599 * 180.02562 * 14 12 11
16 16 C 1.53719 * 107.94112 * 180.54690 * 15 14 12
17 17 H 1.09006 * 112.56338 * 139.71695 * 16 15 14
18 18 C 1.53692 * 109.34244 * 266.24973 * 16 15 14
19 19 N 1.47162 * 107.73336 * 128.69625 * 18 16 15
20 20 C 1.36943 * 125.25358 * 180.39935 * 19 18 16
21 21 H 1.08004 * 120.00175 * 179.13594 * 20 19 18
22 22 C 1.38813 * 120.00108 * 359.14142 * 20 19 18
23 23 N 1.31619 * 119.99587 * 359.97438 * 22 20 19
24 24 Si 1.86798 * 120.00112 * 179.97438 * 22 20 19
25 25 H 1.48492 * 109.47085 * 59.99799 * 24 22 20
26 26 H 1.48498 * 109.47082 * 179.97438 * 24 22 20
27 27 H 1.48502 * 109.47054 * 299.99569 * 24 22 20
28 28 C 1.46748 * 109.41664 * 359.65467 * 19 18 16
29 29 C 1.53929 * 106.71519 * 342.40966 * 28 19 18
30 30 H 1.09000 * 113.01065 * 150.83461 * 29 28 19
31 31 C 1.46781 * 125.34031 * 359.69968 * 14 12 11
32 32 H 1.08998 * 109.47606 * 270.17295 * 1 2 3
33 33 H 1.09005 * 109.46776 * 30.16691 * 1 2 3
34 34 H 1.08999 * 109.47572 * 150.16609 * 1 2 3
35 35 H 1.08997 * 109.47059 * 269.99605 * 6 5 4
36 36 H 1.08996 * 109.47784 * 30.00378 * 6 5 4
37 37 H 1.08998 * 109.46837 * 150.00099 * 6 5 4
38 38 H 1.09001 * 109.47002 * 299.99404 * 10 8 7
39 39 H 1.08993 * 109.46955 * 59.99842 * 10 8 7
40 40 H 1.09000 * 109.47050 * 179.97438 * 10 8 7
41 41 H 1.09001 * 109.47317 * 295.00671 * 11 8 7
42 42 H 1.09007 * 109.46669 * 55.00329 * 11 8 7
43 43 H 1.09000 * 109.77042 * 300.16531 * 15 14 12
44 44 H 1.08997 * 109.77342 * 60.92462 * 15 14 12
45 45 H 1.09001 * 109.76010 * 247.20331 * 18 16 15
46 46 H 1.09000 * 109.75575 * 7.91780 * 18 16 15
47 47 H 0.97005 * 119.99966 * 180.02562 * 23 22 20
48 48 H 1.08994 * 110.01283 * 223.09029 * 28 19 18
49 49 H 1.08998 * 110.00775 * 101.72112 * 28 19 18
50 50 H 1.08995 * 110.02191 * 280.76930 * 31 14 12
51 51 H 1.09000 * 110.02391 * 42.18727 * 31 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2869 1.0423 0.0000
4 8 3.4538 0.7253 -0.0049
5 6 3.6024 -0.6070 -0.0033
6 6 4.9021 -1.3697 -0.0076
7 6 2.3539 -1.1321 0.0028
8 6 1.9590 -2.5864 0.0064
9 1 2.8555 -3.2064 0.0027
10 6 1.1348 -2.8880 1.2597
11 6 1.1237 -2.8911 -1.2388
12 6 0.8324 -4.3684 -1.2992
13 8 1.2512 -5.1050 -0.4316
14 7 0.1065 -4.8710 -2.3175
15 6 -0.2458 -6.2841 -2.4916
16 6 -1.0644 -6.4119 -3.7865
17 1 -0.8002 -7.2989 -4.3625
18 6 -2.5624 -6.3362 -3.4513
19 7 -3.1669 -5.3199 -4.3274
20 6 -4.4875 -4.9577 -4.3236
21 1 -4.8385 -4.1889 -4.9961
22 6 -5.3751 -5.5785 -3.4555
23 7 -4.9474 -6.5157 -2.6363
24 14 -7.1764 -5.0838 -3.4499
25 1 -7.7603 -5.3259 -4.7936
26 1 -7.9080 -5.8903 -2.4402
27 1 -7.2929 -3.6425 -3.1118
28 6 -2.1312 -4.7432 -5.1924
29 6 -0.7754 -5.0906 -4.5518
30 1 0.0293 -5.1829 -5.2813
31 6 -0.4612 -4.0892 -3.4224
32 1 -0.3634 0.0031 1.0276
33 1 -0.3633 0.8885 -0.5165
34 1 -0.3634 -0.8914 -0.5112
35 1 5.2111 -1.5553 -1.0362
36 1 5.6681 -0.7853 0.5021
37 1 4.7672 -2.3203 0.5084
38 1 1.7298 -2.6710 2.1468
39 1 0.2383 -2.2681 1.2628
40 1 0.8488 -3.9399 1.2620
41 1 0.1859 -2.3375 -1.1916
42 1 1.6771 -2.5932 -2.1293
43 1 0.6613 -6.8836 -2.5682
44 1 -0.8414 -6.6228 -1.6439
45 1 -3.0333 -7.2992 -3.6486
46 1 -2.6922 -6.0705 -2.4022
47 1 -5.5677 -6.9498 -2.0298
48 1 -2.2514 -3.6613 -5.2477
49 1 -2.1945 -5.1773 -6.1902
50 1 -1.3742 -3.5910 -3.0965
51 1 0.2634 -3.3524 -3.7691
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001048900332.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:42:45
Heat of formation + Delta-G solvation = 44.415642 kcal
Electronic energy + Delta-G solvation = -31680.890112 eV
Core-core repulsion = 27583.969338 eV
Total energy + Delta-G solvation = -4096.920773 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-45.08027 -40.29109 -38.59013 -36.57001 -34.94365 -33.95423 -32.65172 -32.29685
-30.55293 -29.46580 -28.94092 -28.06384 -27.72704 -25.54086 -25.42464 -24.01043
-22.78901 -20.85302 -20.29631 -20.15086 -19.33102 -19.01525 -17.79597 -17.25573
-16.87037 -16.59103 -16.24963 -15.30231 -15.19866 -14.56268 -14.39865 -14.28413
-13.76730 -13.71421 -13.65173 -13.38951 -13.31736 -13.18632 -13.03926 -12.97394
-12.69751 -12.56308 -12.36291 -12.04105 -11.98588 -11.60501 -11.52603 -11.49622
-11.38343 -11.32243 -10.92883 -10.83362 -10.66611 -10.44730 -10.14789 -10.14421
-9.96136 -9.89027 -9.67750 -9.58368 -9.27593 -8.64774 -8.34084 -6.88822
-5.76771 -3.10788 1.28806 2.03785 2.77785 2.92528 3.21566 3.36990
3.41723 3.43055 4.01530 4.26887 4.45137 4.48099 4.52724 4.75896
4.84051 4.88960 4.92188 5.06753 5.11233 5.13506 5.20012 5.25213
5.29888 5.38901 5.45097 5.46213 5.53268 5.54839 5.59969 5.61563
5.65324 5.68760 5.81576 5.83171 5.90458 5.93801 5.99158 6.13651
6.15439 6.24310 6.33547 6.36181 6.50807 6.53603 6.59881 6.76692
7.50960 7.52869 7.75293 7.76957 8.13731 8.20843 8.33320 9.16458
9.77410 10.40852 11.34572
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.013604 B = 0.002734 C = 0.002529
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2057.747295 B =10237.841056 C =11070.553029
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.083 4.083
2 C 0.029 3.971
3 N -0.369 5.369
4 O 0.094 5.906
5 C -0.034 4.034
6 C -0.074 4.074
7 C -0.190 4.190
8 C 0.007 3.993
9 H 0.090 0.910
10 C -0.152 4.152
11 C -0.133 4.133
12 C 0.528 3.472
13 O -0.546 6.546
14 N -0.607 5.607
15 C 0.121 3.879
16 C -0.124 4.124
17 H 0.090 0.910
18 C 0.185 3.815
19 N -0.603 5.603
20 C -0.232 4.232
21 H 0.078 0.922
22 C -0.006 4.006
23 N -0.921 5.921
24 Si 0.912 3.088
25 H -0.285 1.285
26 H -0.290 1.290
27 H -0.285 1.285
28 C 0.146 3.854
29 C -0.111 4.111
30 H 0.088 0.912
31 C 0.111 3.889
32 H 0.081 0.919
33 H 0.077 0.923
34 H 0.085 0.915
35 H 0.087 0.913
36 H 0.082 0.918
37 H 0.092 0.908
38 H 0.052 0.948
39 H 0.053 0.947
40 H 0.084 0.916
41 H 0.097 0.903
42 H 0.091 0.909
43 H 0.058 0.942
44 H 0.073 0.927
45 H 0.046 0.954
46 H 0.050 0.950
47 H 0.253 0.747
48 H 0.036 0.964
49 H 0.021 0.979
50 H 0.079 0.921
51 H 0.064 0.936
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.035 8.311 2.913 20.071
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.130 4.130
3 N -0.075 5.075
4 O 0.029 5.971
5 C -0.097 4.097
6 C -0.132 4.132
7 C -0.194 4.194
8 C -0.012 4.012
9 H 0.108 0.892
10 C -0.209 4.209
11 C -0.173 4.173
12 C 0.317 3.683
13 O -0.424 6.424
14 N -0.339 5.339
15 C -0.002 4.002
16 C -0.143 4.143
17 H 0.108 0.892
18 C 0.061 3.939
19 N -0.330 5.330
20 C -0.360 4.360
21 H 0.095 0.905
22 C -0.202 4.202
23 N -0.568 5.568
24 Si 0.742 3.258
25 H -0.211 1.211
26 H -0.216 1.216
27 H -0.212 1.212
28 C 0.020 3.980
29 C -0.131 4.131
30 H 0.107 0.893
31 C -0.012 4.012
32 H 0.100 0.900
33 H 0.096 0.904
34 H 0.104 0.896
35 H 0.106 0.894
36 H 0.101 0.899
37 H 0.111 0.889
38 H 0.071 0.929
39 H 0.072 0.928
40 H 0.103 0.897
41 H 0.115 0.885
42 H 0.110 0.890
43 H 0.076 0.924
44 H 0.091 0.909
45 H 0.065 0.935
46 H 0.068 0.932
47 H 0.064 0.936
48 H 0.055 0.945
49 H 0.039 0.961
50 H 0.097 0.903
51 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges 17.878 9.205 3.561 20.421
hybrid contribution -1.164 -0.438 -0.084 1.247
sum 16.714 8.767 3.477 19.191
Atomic orbital electron populations
1.20353 0.85992 1.04054 1.03627 1.23425 0.98896 0.88354 1.02304
1.73833 0.89280 1.23956 1.20467 1.84791 1.21684 1.22493 1.68084
1.24240 0.98189 0.83818 1.03432 1.20350 0.90000 0.98687 1.04128
1.20996 0.91540 0.97369 1.09520 1.19154 0.99405 0.87802 0.94864
0.89151 1.21979 0.99292 1.03923 0.95696 1.21769 1.02357 0.93457
0.99690 1.20106 0.77709 0.90145 0.80360 1.90646 1.52813 1.61084
1.37898 1.48297 1.51829 1.09472 1.24349 1.21813 0.98303 0.81482
0.98588 1.23161 0.99562 0.97341 0.94271 0.89155 1.21208 0.84385
0.93539 0.94801 1.44339 1.04095 1.43397 1.41145 1.18982 0.82378
1.17101 1.17535 0.90459 1.24795 0.98242 0.98632 0.98555 1.69940
1.33578 1.27748 1.25511 0.86207 0.84634 0.77710 0.77240 1.21150
1.21602 1.21175 1.21141 0.86553 0.96721 0.93618 1.22934 0.98751
0.95055 0.96338 0.89339 1.22128 0.98369 0.94253 0.86422 0.90004
0.90415 0.89598 0.89417 0.89907 0.88902 0.92894 0.92810 0.89692
0.88515 0.89039 0.92364 0.90895 0.93543 0.93176 0.93627 0.94543
0.96138 0.90296 0.91732
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.82 9.13 36.01 0.33 -0.49 16
2 C 0.03 0.34 7.20 -82.10 -0.59 -0.25 16
3 N -0.37 -4.80 12.07 33.42 0.40 -4.39 16
4 O 0.09 1.10 11.20 17.15 0.19 1.29 16
5 C -0.03 -0.33 7.49 -35.30 -0.26 -0.59 16
6 C -0.07 -0.44 10.17 36.01 0.37 -0.07 16
7 C -0.19 -2.05 4.93 -104.43 -0.51 -2.56 16
8 C 0.01 0.08 2.33 -91.77 -0.21 -0.14 16
9 H 0.09 0.97 6.94 -51.93 -0.36 0.60 16
10 C -0.15 -1.76 8.84 37.16 0.33 -1.43 16
11 C -0.13 -1.52 4.05 -27.88 -0.11 -1.63 16
12 C 0.53 7.82 7.55 -10.99 -0.08 7.74 16
13 O -0.55 -9.45 14.27 5.56 0.08 -9.37 16
14 N -0.61 -9.33 3.31 -172.16 -0.57 -9.90 16
15 C 0.12 1.98 6.23 -3.57 -0.02 1.95 16
16 C -0.12 -2.11 4.01 -88.61 -0.36 -2.46 16
17 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16
18 C 0.19 4.21 4.77 -3.32 -0.02 4.19 16
19 N -0.60 -14.36 3.39 -171.51 -0.58 -14.94 16
20 C -0.23 -6.16 10.25 -15.06 -0.15 -6.32 16
21 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16
22 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16
23 N -0.92 -26.22 10.25 55.49 0.57 -25.65 16
24 Si 0.91 21.56 29.55 -169.99 -5.02 16.53 16
25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16
27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16
28 C 0.15 2.73 6.41 -3.42 -0.02 2.70 16
29 C -0.11 -1.69 4.14 -88.24 -0.37 -2.06 16
30 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16
31 C 0.11 1.60 5.87 -3.27 -0.02 1.58 16
32 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16
33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16
34 H 0.09 0.81 5.35 -51.93 -0.28 0.54 16
35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16
36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16
37 H 0.09 0.50 7.39 -51.93 -0.38 0.12 16
38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
39 H 0.05 0.59 6.75 -51.93 -0.35 0.24 16
40 H 0.08 1.18 5.95 -51.93 -0.31 0.87 16
41 H 0.10 1.07 5.51 -51.93 -0.29 0.78 16
42 H 0.09 0.92 7.88 -51.93 -0.41 0.51 16
43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16
44 H 0.07 1.34 7.44 -51.93 -0.39 0.96 16
45 H 0.05 1.19 7.40 -51.93 -0.38 0.81 16
46 H 0.05 1.29 6.58 -51.93 -0.34 0.95 16
47 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16
48 H 0.04 0.65 7.97 -51.93 -0.41 0.24 16
49 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16
50 H 0.08 1.32 7.76 -51.93 -0.40 0.92 16
51 H 0.06 0.74 7.61 -51.93 -0.40 0.35 16
LS Contribution 394.14 15.07 5.94 5.94
Total: -1.00 -31.78 394.14 -8.85 -40.63
By element:
Atomic # 1 Polarization: 8.01 SS G_CDS: -8.05 Total: -0.04 kcal
Atomic # 6 Polarization: 1.72 SS G_CDS: -1.81 Total: -0.08 kcal
Atomic # 7 Polarization: -54.71 SS G_CDS: -0.18 Total: -54.89 kcal
Atomic # 8 Polarization: -8.35 SS G_CDS: 0.27 Total: -8.08 kcal
Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal
Total LS contribution 5.94 Total: 5.94 kcal
Total: -31.78 -8.85 -40.63 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001048900332.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 85.042 kcal
(2) G-P(sol) polarization free energy of solvation -31.777 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.265 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.627 kcal
(6) G-S(sol) free energy of system = (1) + (5) 44.416 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.87 seconds