Wall clock time and date at job start Wed Apr 1 2020 04:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30176 * 126.80575 * 2 1 4 4 O 1.20917 * 111.60574 * 180.25004 * 3 2 1 5 5 C 1.34049 * 111.56384 * 359.74354 * 4 3 2 6 6 C 1.50700 * 126.76963 * 180.02562 * 5 4 3 7 7 C 1.35446 * 106.44615 * 0.02562 * 5 4 3 8 8 C 1.50698 * 128.00180 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.47612 * 359.97438 * 8 7 5 10 10 C 1.53006 * 109.47184 * 119.99936 * 8 7 5 11 11 C 1.52999 * 109.47150 * 239.99379 * 8 7 5 12 12 C 1.50700 * 109.47526 * 174.99982 * 11 8 7 13 13 O 1.21274 * 119.99793 * 0.02562 * 12 11 8 14 14 N 1.34774 * 119.99911 * 180.02562 * 12 11 8 15 15 C 1.46673 * 125.33599 * 180.02562 * 14 12 11 16 16 C 1.53719 * 107.94112 * 180.54690 * 15 14 12 17 17 H 1.09006 * 112.56338 * 139.71695 * 16 15 14 18 18 C 1.53692 * 109.34244 * 266.24973 * 16 15 14 19 19 N 1.47162 * 107.73336 * 128.69625 * 18 16 15 20 20 C 1.36943 * 125.25358 * 180.39935 * 19 18 16 21 21 H 1.08004 * 120.00175 * 179.13594 * 20 19 18 22 22 C 1.38813 * 120.00108 * 359.14142 * 20 19 18 23 23 N 1.31619 * 119.99587 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00112 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47085 * 59.99799 * 24 22 20 26 26 H 1.48498 * 109.47082 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47054 * 299.99569 * 24 22 20 28 28 C 1.46748 * 109.41664 * 359.65467 * 19 18 16 29 29 C 1.53929 * 106.71519 * 342.40966 * 28 19 18 30 30 H 1.09000 * 113.01065 * 150.83461 * 29 28 19 31 31 C 1.46781 * 125.34031 * 359.69968 * 14 12 11 32 32 H 1.08998 * 109.47606 * 270.17295 * 1 2 3 33 33 H 1.09005 * 109.46776 * 30.16691 * 1 2 3 34 34 H 1.08999 * 109.47572 * 150.16609 * 1 2 3 35 35 H 1.08997 * 109.47059 * 269.99605 * 6 5 4 36 36 H 1.08996 * 109.47784 * 30.00378 * 6 5 4 37 37 H 1.08998 * 109.46837 * 150.00099 * 6 5 4 38 38 H 1.09001 * 109.47002 * 299.99404 * 10 8 7 39 39 H 1.08993 * 109.46955 * 59.99842 * 10 8 7 40 40 H 1.09000 * 109.47050 * 179.97438 * 10 8 7 41 41 H 1.09001 * 109.47317 * 295.00671 * 11 8 7 42 42 H 1.09007 * 109.46669 * 55.00329 * 11 8 7 43 43 H 1.09000 * 109.77042 * 300.16531 * 15 14 12 44 44 H 1.08997 * 109.77342 * 60.92462 * 15 14 12 45 45 H 1.09001 * 109.76010 * 247.20331 * 18 16 15 46 46 H 1.09000 * 109.75575 * 7.91780 * 18 16 15 47 47 H 0.97005 * 119.99966 * 180.02562 * 23 22 20 48 48 H 1.08994 * 110.01283 * 223.09029 * 28 19 18 49 49 H 1.08998 * 110.00775 * 101.72112 * 28 19 18 50 50 H 1.08995 * 110.02191 * 280.76930 * 31 14 12 51 51 H 1.09000 * 110.02391 * 42.18727 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0049 5 6 3.6024 -0.6070 -0.0033 6 6 4.9021 -1.3697 -0.0076 7 6 2.3539 -1.1321 0.0028 8 6 1.9590 -2.5864 0.0064 9 1 2.8555 -3.2064 0.0027 10 6 1.1348 -2.8880 1.2597 11 6 1.1237 -2.8911 -1.2388 12 6 0.8324 -4.3684 -1.2992 13 8 1.2512 -5.1050 -0.4316 14 7 0.1065 -4.8710 -2.3175 15 6 -0.2458 -6.2841 -2.4916 16 6 -1.0644 -6.4119 -3.7865 17 1 -0.8002 -7.2989 -4.3625 18 6 -2.5624 -6.3362 -3.4513 19 7 -3.1669 -5.3199 -4.3274 20 6 -4.4875 -4.9577 -4.3236 21 1 -4.8385 -4.1889 -4.9961 22 6 -5.3751 -5.5785 -3.4555 23 7 -4.9474 -6.5157 -2.6363 24 14 -7.1764 -5.0838 -3.4499 25 1 -7.7603 -5.3259 -4.7936 26 1 -7.9080 -5.8903 -2.4402 27 1 -7.2929 -3.6425 -3.1118 28 6 -2.1312 -4.7432 -5.1924 29 6 -0.7754 -5.0906 -4.5518 30 1 0.0293 -5.1829 -5.2813 31 6 -0.4612 -4.0892 -3.4224 32 1 -0.3634 0.0031 1.0276 33 1 -0.3633 0.8885 -0.5165 34 1 -0.3634 -0.8914 -0.5112 35 1 5.2111 -1.5553 -1.0362 36 1 5.6681 -0.7853 0.5021 37 1 4.7672 -2.3203 0.5084 38 1 1.7298 -2.6710 2.1468 39 1 0.2383 -2.2681 1.2628 40 1 0.8488 -3.9399 1.2620 41 1 0.1859 -2.3375 -1.1916 42 1 1.6771 -2.5932 -2.1293 43 1 0.6613 -6.8836 -2.5682 44 1 -0.8414 -6.6228 -1.6439 45 1 -3.0333 -7.2992 -3.6486 46 1 -2.6922 -6.0705 -2.4022 47 1 -5.5677 -6.9498 -2.0298 48 1 -2.2514 -3.6613 -5.2477 49 1 -2.1945 -5.1773 -6.1902 50 1 -1.3742 -3.5910 -3.0965 51 1 0.2634 -3.3524 -3.7691 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048900332.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:45 Heat of formation + Delta-G solvation = 44.415642 kcal Electronic energy + Delta-G solvation = -31680.890112 eV Core-core repulsion = 27583.969338 eV Total energy + Delta-G solvation = -4096.920773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.08027 -40.29109 -38.59013 -36.57001 -34.94365 -33.95423 -32.65172 -32.29685 -30.55293 -29.46580 -28.94092 -28.06384 -27.72704 -25.54086 -25.42464 -24.01043 -22.78901 -20.85302 -20.29631 -20.15086 -19.33102 -19.01525 -17.79597 -17.25573 -16.87037 -16.59103 -16.24963 -15.30231 -15.19866 -14.56268 -14.39865 -14.28413 -13.76730 -13.71421 -13.65173 -13.38951 -13.31736 -13.18632 -13.03926 -12.97394 -12.69751 -12.56308 -12.36291 -12.04105 -11.98588 -11.60501 -11.52603 -11.49622 -11.38343 -11.32243 -10.92883 -10.83362 -10.66611 -10.44730 -10.14789 -10.14421 -9.96136 -9.89027 -9.67750 -9.58368 -9.27593 -8.64774 -8.34084 -6.88822 -5.76771 -3.10788 1.28806 2.03785 2.77785 2.92528 3.21566 3.36990 3.41723 3.43055 4.01530 4.26887 4.45137 4.48099 4.52724 4.75896 4.84051 4.88960 4.92188 5.06753 5.11233 5.13506 5.20012 5.25213 5.29888 5.38901 5.45097 5.46213 5.53268 5.54839 5.59969 5.61563 5.65324 5.68760 5.81576 5.83171 5.90458 5.93801 5.99158 6.13651 6.15439 6.24310 6.33547 6.36181 6.50807 6.53603 6.59881 6.76692 7.50960 7.52869 7.75293 7.76957 8.13731 8.20843 8.33320 9.16458 9.77410 10.40852 11.34572 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013604 B = 0.002734 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.747295 B =10237.841056 C =11070.553029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.029 3.971 3 N -0.369 5.369 4 O 0.094 5.906 5 C -0.034 4.034 6 C -0.074 4.074 7 C -0.190 4.190 8 C 0.007 3.993 9 H 0.090 0.910 10 C -0.152 4.152 11 C -0.133 4.133 12 C 0.528 3.472 13 O -0.546 6.546 14 N -0.607 5.607 15 C 0.121 3.879 16 C -0.124 4.124 17 H 0.090 0.910 18 C 0.185 3.815 19 N -0.603 5.603 20 C -0.232 4.232 21 H 0.078 0.922 22 C -0.006 4.006 23 N -0.921 5.921 24 Si 0.912 3.088 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.146 3.854 29 C -0.111 4.111 30 H 0.088 0.912 31 C 0.111 3.889 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.058 0.942 44 H 0.073 0.927 45 H 0.046 0.954 46 H 0.050 0.950 47 H 0.253 0.747 48 H 0.036 0.964 49 H 0.021 0.979 50 H 0.079 0.921 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.035 8.311 2.913 20.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.130 4.130 3 N -0.075 5.075 4 O 0.029 5.971 5 C -0.097 4.097 6 C -0.132 4.132 7 C -0.194 4.194 8 C -0.012 4.012 9 H 0.108 0.892 10 C -0.209 4.209 11 C -0.173 4.173 12 C 0.317 3.683 13 O -0.424 6.424 14 N -0.339 5.339 15 C -0.002 4.002 16 C -0.143 4.143 17 H 0.108 0.892 18 C 0.061 3.939 19 N -0.330 5.330 20 C -0.360 4.360 21 H 0.095 0.905 22 C -0.202 4.202 23 N -0.568 5.568 24 Si 0.742 3.258 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.020 3.980 29 C -0.131 4.131 30 H 0.107 0.893 31 C -0.012 4.012 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.110 0.890 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.055 0.945 49 H 0.039 0.961 50 H 0.097 0.903 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.878 9.205 3.561 20.421 hybrid contribution -1.164 -0.438 -0.084 1.247 sum 16.714 8.767 3.477 19.191 Atomic orbital electron populations 1.20353 0.85992 1.04054 1.03627 1.23425 0.98896 0.88354 1.02304 1.73833 0.89280 1.23956 1.20467 1.84791 1.21684 1.22493 1.68084 1.24240 0.98189 0.83818 1.03432 1.20350 0.90000 0.98687 1.04128 1.20996 0.91540 0.97369 1.09520 1.19154 0.99405 0.87802 0.94864 0.89151 1.21979 0.99292 1.03923 0.95696 1.21769 1.02357 0.93457 0.99690 1.20106 0.77709 0.90145 0.80360 1.90646 1.52813 1.61084 1.37898 1.48297 1.51829 1.09472 1.24349 1.21813 0.98303 0.81482 0.98588 1.23161 0.99562 0.97341 0.94271 0.89155 1.21208 0.84385 0.93539 0.94801 1.44339 1.04095 1.43397 1.41145 1.18982 0.82378 1.17101 1.17535 0.90459 1.24795 0.98242 0.98632 0.98555 1.69940 1.33578 1.27748 1.25511 0.86207 0.84634 0.77710 0.77240 1.21150 1.21602 1.21175 1.21141 0.86553 0.96721 0.93618 1.22934 0.98751 0.95055 0.96338 0.89339 1.22128 0.98369 0.94253 0.86422 0.90004 0.90415 0.89598 0.89417 0.89907 0.88902 0.92894 0.92810 0.89692 0.88515 0.89039 0.92364 0.90895 0.93543 0.93176 0.93627 0.94543 0.96138 0.90296 0.91732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 9.13 36.01 0.33 -0.49 16 2 C 0.03 0.34 7.20 -82.10 -0.59 -0.25 16 3 N -0.37 -4.80 12.07 33.42 0.40 -4.39 16 4 O 0.09 1.10 11.20 17.15 0.19 1.29 16 5 C -0.03 -0.33 7.49 -35.30 -0.26 -0.59 16 6 C -0.07 -0.44 10.17 36.01 0.37 -0.07 16 7 C -0.19 -2.05 4.93 -104.43 -0.51 -2.56 16 8 C 0.01 0.08 2.33 -91.77 -0.21 -0.14 16 9 H 0.09 0.97 6.94 -51.93 -0.36 0.60 16 10 C -0.15 -1.76 8.84 37.16 0.33 -1.43 16 11 C -0.13 -1.52 4.05 -27.88 -0.11 -1.63 16 12 C 0.53 7.82 7.55 -10.99 -0.08 7.74 16 13 O -0.55 -9.45 14.27 5.56 0.08 -9.37 16 14 N -0.61 -9.33 3.31 -172.16 -0.57 -9.90 16 15 C 0.12 1.98 6.23 -3.57 -0.02 1.95 16 16 C -0.12 -2.11 4.01 -88.61 -0.36 -2.46 16 17 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 18 C 0.19 4.21 4.77 -3.32 -0.02 4.19 16 19 N -0.60 -14.36 3.39 -171.51 -0.58 -14.94 16 20 C -0.23 -6.16 10.25 -15.06 -0.15 -6.32 16 21 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 22 C -0.01 -0.16 5.48 -17.43 -0.10 -0.25 16 23 N -0.92 -26.22 10.25 55.49 0.57 -25.65 16 24 Si 0.91 21.56 29.55 -169.99 -5.02 16.53 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.15 2.73 6.41 -3.42 -0.02 2.70 16 29 C -0.11 -1.69 4.14 -88.24 -0.37 -2.06 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 31 C 0.11 1.60 5.87 -3.27 -0.02 1.58 16 32 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.81 5.35 -51.93 -0.28 0.54 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.09 0.50 7.39 -51.93 -0.38 0.12 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.05 0.59 6.75 -51.93 -0.35 0.24 16 40 H 0.08 1.18 5.95 -51.93 -0.31 0.87 16 41 H 0.10 1.07 5.51 -51.93 -0.29 0.78 16 42 H 0.09 0.92 7.88 -51.93 -0.41 0.51 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.07 1.34 7.44 -51.93 -0.39 0.96 16 45 H 0.05 1.19 7.40 -51.93 -0.38 0.81 16 46 H 0.05 1.29 6.58 -51.93 -0.34 0.95 16 47 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 48 H 0.04 0.65 7.97 -51.93 -0.41 0.24 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.08 1.32 7.76 -51.93 -0.40 0.92 16 51 H 0.06 0.74 7.61 -51.93 -0.40 0.35 16 LS Contribution 394.14 15.07 5.94 5.94 Total: -1.00 -31.78 394.14 -8.85 -40.63 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -8.05 Total: -0.04 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -1.81 Total: -0.08 kcal Atomic # 7 Polarization: -54.71 SS G_CDS: -0.18 Total: -54.89 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.27 Total: -8.08 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.78 -8.85 -40.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048900332.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.042 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds