Wall clock time and date at job start Wed Apr 1 2020 04:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30176 * 126.80575 * 2 1 4 4 O 1.20917 * 111.60574 * 180.25004 * 3 2 1 5 5 C 1.34049 * 111.56384 * 359.74354 * 4 3 2 6 6 C 1.50700 * 126.76963 * 180.02562 * 5 4 3 7 7 C 1.35446 * 106.44615 * 0.02562 * 5 4 3 8 8 C 1.50698 * 128.00180 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.47612 * 359.97438 * 8 7 5 10 10 C 1.53006 * 109.47184 * 119.99936 * 8 7 5 11 11 C 1.52999 * 109.47150 * 239.99379 * 8 7 5 12 12 C 1.50700 * 109.47526 * 174.99982 * 11 8 7 13 13 O 1.21274 * 119.99793 * 0.02562 * 12 11 8 14 14 N 1.34774 * 119.99911 * 180.02562 * 12 11 8 15 15 C 1.46673 * 125.33599 * 180.02562 * 14 12 11 16 16 C 1.53719 * 107.94112 * 180.54690 * 15 14 12 17 17 H 1.09006 * 112.56338 * 139.71695 * 16 15 14 18 18 C 1.53692 * 109.34244 * 266.24973 * 16 15 14 19 19 N 1.47162 * 107.73336 * 128.69625 * 18 16 15 20 20 C 1.36943 * 125.25358 * 180.39935 * 19 18 16 21 21 H 1.08004 * 120.00175 * 179.13594 * 20 19 18 22 22 C 1.38813 * 120.00108 * 359.14142 * 20 19 18 23 23 N 1.31619 * 119.99587 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 120.00112 * 179.97438 * 22 20 19 25 25 H 1.48492 * 109.47085 * 59.99799 * 24 22 20 26 26 H 1.48498 * 109.47082 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47054 * 299.99569 * 24 22 20 28 28 C 1.46748 * 109.41664 * 359.65467 * 19 18 16 29 29 C 1.53929 * 106.71519 * 342.40966 * 28 19 18 30 30 H 1.09000 * 113.01065 * 150.83461 * 29 28 19 31 31 C 1.46781 * 125.34031 * 359.69968 * 14 12 11 32 32 H 1.08998 * 109.47606 * 270.17295 * 1 2 3 33 33 H 1.09005 * 109.46776 * 30.16691 * 1 2 3 34 34 H 1.08999 * 109.47572 * 150.16609 * 1 2 3 35 35 H 1.08997 * 109.47059 * 269.99605 * 6 5 4 36 36 H 1.08996 * 109.47784 * 30.00378 * 6 5 4 37 37 H 1.08998 * 109.46837 * 150.00099 * 6 5 4 38 38 H 1.09001 * 109.47002 * 299.99404 * 10 8 7 39 39 H 1.08993 * 109.46955 * 59.99842 * 10 8 7 40 40 H 1.09000 * 109.47050 * 179.97438 * 10 8 7 41 41 H 1.09001 * 109.47317 * 295.00671 * 11 8 7 42 42 H 1.09007 * 109.46669 * 55.00329 * 11 8 7 43 43 H 1.09000 * 109.77042 * 300.16531 * 15 14 12 44 44 H 1.08997 * 109.77342 * 60.92462 * 15 14 12 45 45 H 1.09001 * 109.76010 * 247.20331 * 18 16 15 46 46 H 1.09000 * 109.75575 * 7.91780 * 18 16 15 47 47 H 0.97005 * 119.99966 * 180.02562 * 23 22 20 48 48 H 1.08994 * 110.01283 * 223.09029 * 28 19 18 49 49 H 1.08998 * 110.00775 * 101.72112 * 28 19 18 50 50 H 1.08995 * 110.02191 * 280.76930 * 31 14 12 51 51 H 1.09000 * 110.02391 * 42.18727 * 31 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0049 5 6 3.6024 -0.6070 -0.0033 6 6 4.9021 -1.3697 -0.0076 7 6 2.3539 -1.1321 0.0028 8 6 1.9590 -2.5864 0.0064 9 1 2.8555 -3.2064 0.0027 10 6 1.1348 -2.8880 1.2597 11 6 1.1237 -2.8911 -1.2388 12 6 0.8324 -4.3684 -1.2992 13 8 1.2512 -5.1050 -0.4316 14 7 0.1065 -4.8710 -2.3175 15 6 -0.2458 -6.2841 -2.4916 16 6 -1.0644 -6.4119 -3.7865 17 1 -0.8002 -7.2989 -4.3625 18 6 -2.5624 -6.3362 -3.4513 19 7 -3.1669 -5.3199 -4.3274 20 6 -4.4875 -4.9577 -4.3236 21 1 -4.8385 -4.1889 -4.9961 22 6 -5.3751 -5.5785 -3.4555 23 7 -4.9474 -6.5157 -2.6363 24 14 -7.1764 -5.0838 -3.4499 25 1 -7.7603 -5.3259 -4.7936 26 1 -7.9080 -5.8903 -2.4402 27 1 -7.2929 -3.6425 -3.1118 28 6 -2.1312 -4.7432 -5.1924 29 6 -0.7754 -5.0906 -4.5518 30 1 0.0293 -5.1829 -5.2813 31 6 -0.4612 -4.0892 -3.4224 32 1 -0.3634 0.0031 1.0276 33 1 -0.3633 0.8885 -0.5165 34 1 -0.3634 -0.8914 -0.5112 35 1 5.2111 -1.5553 -1.0362 36 1 5.6681 -0.7853 0.5021 37 1 4.7672 -2.3203 0.5084 38 1 1.7298 -2.6710 2.1468 39 1 0.2383 -2.2681 1.2628 40 1 0.8488 -3.9399 1.2620 41 1 0.1859 -2.3375 -1.1916 42 1 1.6771 -2.5932 -2.1293 43 1 0.6613 -6.8836 -2.5682 44 1 -0.8414 -6.6228 -1.6439 45 1 -3.0333 -7.2992 -3.6486 46 1 -2.6922 -6.0705 -2.4022 47 1 -5.5677 -6.9498 -2.0298 48 1 -2.2514 -3.6613 -5.2477 49 1 -2.1945 -5.1773 -6.1902 50 1 -1.3742 -3.5910 -3.0965 51 1 0.2634 -3.3524 -3.7691 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048900332.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:44 Heat of formation + Delta-G solvation = 26.315013 kcal Electronic energy + Delta-G solvation = -31681.675014 eV Core-core repulsion = 27583.969338 eV Total energy + Delta-G solvation = -4097.705675 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.92203 -41.54845 -39.88600 -37.53600 -36.49386 -34.74647 -34.10565 -33.42992 -31.98928 -31.05633 -29.75518 -29.10899 -28.43253 -27.11405 -26.98395 -25.08323 -24.12591 -21.88651 -21.71024 -21.07496 -20.71481 -20.17550 -18.84285 -18.64212 -18.19971 -17.56655 -17.47165 -16.71730 -16.37750 -16.15982 -15.54971 -15.32784 -15.27763 -14.72141 -14.62469 -14.47958 -14.22570 -14.12939 -13.92635 -13.83982 -13.80407 -13.58564 -13.51382 -13.35065 -13.25883 -13.08906 -13.01606 -12.72575 -12.65965 -12.37781 -12.29723 -12.25138 -12.00748 -11.84998 -11.82818 -11.52841 -11.47883 -11.32359 -10.82242 -10.78881 -10.64590 -10.05961 -9.59159 -8.84979 -7.83330 -5.17769 0.51306 1.19762 1.46359 1.48542 1.54822 1.62567 2.03754 2.24075 2.50746 3.18100 3.33948 3.35902 3.53380 3.57952 3.64785 3.73881 3.87208 3.97714 4.00097 4.12950 4.22096 4.29312 4.33772 4.36806 4.44172 4.54851 4.55727 4.60540 4.65336 4.72135 4.72807 4.75325 4.78902 4.81870 4.88755 4.93725 4.98049 5.02517 5.07893 5.12682 5.14285 5.22911 5.28190 5.30190 5.42888 5.44367 5.50536 5.66495 5.80101 6.22804 6.57919 7.12701 7.16483 7.32992 7.82551 8.43989 9.26396 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013604 B = 0.002734 C = 0.002529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2057.747295 B =10237.841056 C =11070.553029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.023 3.977 3 N -0.398 5.398 4 O 0.085 5.915 5 C -0.021 4.021 6 C -0.076 4.076 7 C -0.203 4.203 8 C 0.017 3.983 9 H 0.095 0.905 10 C -0.150 4.150 11 C -0.125 4.125 12 C 0.525 3.475 13 O -0.574 6.574 14 N -0.611 5.611 15 C 0.126 3.874 16 C -0.113 4.113 17 H 0.112 0.888 18 C 0.198 3.802 19 N -0.624 5.624 20 C -0.237 4.237 21 H 0.085 0.915 22 C -0.066 4.066 23 N -0.951 5.951 24 Si 0.973 3.027 25 H -0.277 1.277 26 H -0.300 1.300 27 H -0.277 1.277 28 C 0.139 3.861 29 C -0.093 4.093 30 H 0.134 0.866 31 C 0.114 3.886 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.116 0.884 43 H 0.078 0.922 44 H 0.039 0.961 45 H 0.004 0.996 46 H 0.008 0.992 47 H 0.244 0.756 48 H 0.048 0.952 49 H 0.029 0.971 50 H 0.051 0.949 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.354 9.712 1.319 22.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.136 4.136 3 N -0.107 5.107 4 O 0.022 5.978 5 C -0.084 4.084 6 C -0.133 4.133 7 C -0.207 4.207 8 C -0.002 4.002 9 H 0.113 0.887 10 C -0.207 4.207 11 C -0.164 4.164 12 C 0.316 3.684 13 O -0.455 6.455 14 N -0.343 5.343 15 C 0.003 3.997 16 C -0.133 4.133 17 H 0.130 0.870 18 C 0.073 3.927 19 N -0.350 5.350 20 C -0.366 4.366 21 H 0.103 0.897 22 C -0.259 4.259 23 N -0.600 5.600 24 Si 0.802 3.198 25 H -0.203 1.203 26 H -0.226 1.226 27 H -0.203 1.203 28 C 0.014 3.986 29 C -0.113 4.113 30 H 0.152 0.848 31 C -0.008 4.008 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.118 0.882 42 H 0.134 0.866 43 H 0.096 0.904 44 H 0.058 0.942 45 H 0.022 0.978 46 H 0.026 0.974 47 H 0.053 0.947 48 H 0.066 0.934 49 H 0.047 0.953 50 H 0.069 0.931 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 20.227 10.640 1.928 22.936 hybrid contribution -1.868 -0.878 0.413 2.105 sum 18.359 9.762 2.341 20.924 Atomic orbital electron populations 1.20409 0.85301 1.04344 1.04085 1.23726 0.99561 0.88554 1.01746 1.73829 0.89873 1.24855 1.22116 1.84763 1.21271 1.23499 1.68234 1.24898 0.99367 0.83146 1.00992 1.20583 0.88496 0.98624 1.05589 1.20930 0.91889 0.96841 1.11079 1.19025 0.99228 0.87997 0.93985 0.88653 1.21923 0.99750 1.02195 0.96805 1.21781 1.02988 0.90615 1.01055 1.20724 0.76874 0.91372 0.79458 1.90640 1.53930 1.62162 1.38723 1.48393 1.51885 1.09010 1.25039 1.21640 0.98388 0.82833 0.96884 1.22993 0.95227 0.99720 0.95365 0.87029 1.20849 0.88089 0.91148 0.92591 1.44636 1.04475 1.43895 1.42029 1.19402 0.84009 1.16444 1.16761 0.89725 1.25596 1.02165 0.99231 0.98941 1.70189 1.34225 1.29182 1.26444 0.85225 0.80090 0.77409 0.77073 1.20278 1.22606 1.20284 1.21377 0.86942 0.97093 0.93205 1.22986 0.98083 0.93352 0.96861 0.84837 1.22138 0.98442 0.94564 0.85702 0.89492 0.90090 0.89278 0.87645 0.88259 0.88133 0.92195 0.92709 0.92196 0.88178 0.86609 0.90371 0.94234 0.97819 0.97382 0.94699 0.93420 0.95270 0.93110 0.87449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.59 9.13 71.24 0.65 -0.94 16 2 C 0.02 0.50 7.20 43.58 0.31 0.81 16 3 N -0.40 -9.92 12.07 -49.56 -0.60 -10.52 16 4 O 0.08 1.85 11.20 71.56 0.80 2.65 16 5 C -0.02 -0.35 7.49 25.04 0.19 -0.17 16 6 C -0.08 -0.65 10.17 71.24 0.72 0.07 16 7 C -0.20 -3.96 4.93 -19.74 -0.10 -4.06 16 8 C 0.02 0.34 2.33 -11.54 -0.03 0.31 16 9 H 0.10 1.81 6.94 -2.39 -0.02 1.80 16 10 C -0.15 -3.39 8.84 71.98 0.64 -2.75 16 11 C -0.13 -2.56 4.05 29.85 0.12 -2.43 16 12 C 0.53 14.81 7.55 87.66 0.66 15.47 16 13 O -0.57 -19.60 14.27 -3.01 -0.04 -19.64 16 14 N -0.61 -17.80 3.31 -816.98 -2.71 -20.51 16 15 C 0.13 4.05 6.23 86.59 0.54 4.59 16 16 C -0.11 -3.75 4.01 -9.49 -0.04 -3.79 16 17 H 0.11 3.24 8.14 -2.38 -0.02 3.22 16 18 C 0.20 9.35 4.77 86.49 0.41 9.76 16 19 N -0.62 -29.95 3.39 -696.53 -2.36 -32.31 16 20 C -0.24 -12.74 10.25 84.03 0.86 -11.88 16 21 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 22 C -0.07 -3.72 5.48 84.86 0.47 -3.25 16 23 N -0.95 -56.88 10.25 21.65 0.22 -56.66 16 24 Si 0.97 45.22 29.55 68.60 2.03 47.25 16 25 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 26 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 27 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 28 C 0.14 4.88 6.41 86.65 0.56 5.44 16 29 C -0.09 -2.54 4.14 -9.25 -0.04 -2.57 16 30 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 31 C 0.11 2.96 5.87 86.73 0.51 3.47 16 32 H 0.09 1.52 8.12 -2.39 -0.02 1.50 16 33 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.09 1.58 5.35 -2.39 -0.01 1.57 16 35 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.10 0.76 7.39 -2.39 -0.02 0.74 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 39 H 0.05 1.19 6.75 -2.39 -0.02 1.18 16 40 H 0.06 1.68 5.95 -2.39 -0.01 1.66 16 41 H 0.10 2.02 5.51 -2.39 -0.01 2.01 16 42 H 0.12 1.84 7.88 -2.38 -0.02 1.82 16 43 H 0.08 2.22 8.14 -2.39 -0.02 2.21 16 44 H 0.04 1.53 7.44 -2.39 -0.02 1.51 16 45 H 0.00 0.19 7.40 -2.39 -0.02 0.18 16 46 H 0.01 0.44 6.58 -2.39 -0.02 0.42 16 47 H 0.24 14.40 8.31 -92.70 -0.77 13.63 16 48 H 0.05 1.58 7.97 -2.39 -0.02 1.57 16 49 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 50 H 0.05 1.63 7.76 -2.39 -0.02 1.61 16 51 H 0.11 1.92 7.61 -2.39 -0.02 1.91 16 Total: -1.00 -73.08 394.14 4.72 -68.36 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 0.94 Total: 13.30 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 6.44 Total: 8.08 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -5.44 Total: -120.00 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: 0.76 Total: -16.99 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -73.08 4.72 -68.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048900332.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.678 kcal (2) G-P(sol) polarization free energy of solvation -73.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds