Wall clock time and date at job start Wed Apr 1 2020 05:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34250 * 126.52506 * 2 1 4 4 C 1.34049 * 108.22777 * 180.23176 * 3 2 1 5 5 C 1.50702 * 125.38395 * 179.80495 * 4 3 2 6 6 C 1.53004 * 109.46840 * 299.96092 * 5 4 3 7 7 C 1.53000 * 109.46775 * 59.95701 * 5 4 3 8 8 N 1.29935 * 109.24516 * 359.77105 * 4 3 2 9 9 C 1.36070 * 108.47237 * 359.97438 * 8 4 3 10 10 C 1.47423 * 126.44646 * 179.97438 * 9 8 4 11 11 O 1.21610 * 119.99868 * 184.83551 * 10 9 8 12 12 N 1.34774 * 120.00348 * 4.83140 * 10 9 8 13 13 C 1.47858 * 122.22446 * 354.27093 * 12 10 9 14 14 C 1.52718 * 111.06006 * 232.46830 * 13 12 10 15 15 C 1.53967 * 111.08870 * 311.15514 * 14 13 12 16 16 C 1.51080 * 107.29804 * 57.75791 * 15 14 13 17 17 H 1.08992 * 108.73148 * 50.43112 * 16 15 14 18 18 C 1.45717 * 122.22983 * 174.25138 * 12 10 9 19 19 H 1.09005 * 111.64494 * 240.86988 * 18 12 10 20 20 C 1.53432 * 116.37146 * 9.91783 * 18 12 10 21 21 C 1.55479 * 101.67023 * 152.73489 * 20 18 12 22 22 N 1.45023 * 119.19715 * 175.70294 * 16 15 14 23 23 C 1.36937 * 126.55954 * 330.57747 * 22 16 15 24 24 H 1.08000 * 120.00258 * 0.02562 * 23 22 16 25 25 C 1.38816 * 120.00053 * 180.02562 * 23 22 16 26 26 N 1.31615 * 120.00052 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00126 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47630 * 89.99546 * 27 25 23 29 29 H 1.48497 * 109.47149 * 209.99692 * 27 25 23 30 30 H 1.48501 * 109.47254 * 329.99461 * 27 25 23 31 31 H 1.09000 * 109.47004 * 270.15992 * 1 2 3 32 32 H 1.09000 * 109.46936 * 30.16104 * 1 2 3 33 33 H 1.09004 * 109.47148 * 150.15858 * 1 2 3 34 34 H 1.08996 * 109.47570 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.47148 * 59.99608 * 6 5 4 36 36 H 1.09003 * 109.46795 * 179.97438 * 6 5 4 37 37 H 1.08994 * 109.47126 * 299.99209 * 6 5 4 38 38 H 1.09001 * 109.47293 * 60.00181 * 7 5 4 39 39 H 1.09004 * 109.46844 * 180.02562 * 7 5 4 40 40 H 1.09001 * 109.46991 * 300.00062 * 7 5 4 41 41 H 1.08998 * 109.15820 * 352.87244 * 13 12 10 42 42 H 1.08996 * 109.15618 * 112.11263 * 13 12 10 43 43 H 1.09000 * 109.07392 * 71.98456 * 14 13 12 44 44 H 1.08993 * 109.06861 * 191.01101 * 14 13 12 45 45 H 1.09000 * 110.76545 * 297.81756 * 15 14 13 46 46 H 1.09001 * 109.04413 * 176.72432 * 15 14 13 47 47 H 1.08999 * 110.98795 * 34.64060 * 20 18 12 48 48 H 1.09004 * 111.02293 * 270.83857 * 20 18 12 49 49 H 1.09002 * 109.95657 * 218.02131 * 21 20 18 50 50 H 1.08995 * 109.96461 * 96.78046 * 21 20 18 51 51 H 0.96993 * 120.00454 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0788 0.0000 4 6 3.5787 0.6580 -0.0052 5 6 4.7930 1.5506 -0.0111 6 6 4.7718 2.4320 -1.2616 7 6 4.7815 2.4355 1.2369 8 7 3.6002 -0.6412 -0.0034 9 6 2.3170 -1.0936 0.0035 10 6 1.8853 -2.5032 0.0071 11 8 0.7034 -2.7774 -0.0754 12 7 2.8005 -3.4881 0.1017 13 6 4.2541 -3.2184 0.0795 14 6 4.9550 -4.0738 -0.9737 15 6 4.5359 -5.5507 -0.8563 16 6 3.0334 -5.6045 -1.0056 17 1 2.7505 -5.0493 -1.8998 18 6 2.4233 -4.8894 0.2330 19 1 2.7940 -5.3201 1.1633 20 6 0.9394 -5.2184 0.0234 21 6 1.0106 -6.6902 -0.4727 22 7 2.3707 -6.8942 -1.0297 23 6 2.8987 -8.0744 -1.4810 24 1 3.9066 -8.1021 -1.8678 25 6 2.1384 -9.2351 -1.4413 26 7 0.9102 -9.2015 -0.9694 27 14 2.8589 -10.8451 -2.0562 28 1 3.5348 -11.5454 -0.9347 29 1 1.7705 -11.7023 -2.5909 30 1 3.8441 -10.5676 -3.1321 31 1 -0.3633 0.0029 1.0277 32 1 -0.3633 0.8885 -0.5163 33 1 -0.3634 -0.8914 -0.5114 34 1 5.6944 0.9378 -0.0141 35 1 3.8703 3.0448 -1.2589 36 1 5.6498 3.0780 -1.2657 37 1 4.7800 1.8016 -2.1507 38 1 4.7965 1.8076 2.1278 39 1 5.6595 3.0814 1.2324 40 1 3.8800 3.0483 1.2395 41 1 4.4191 -2.1651 -0.1474 42 1 4.6746 -3.4432 1.0597 43 1 4.6982 -3.6998 -1.9648 44 1 6.0332 -3.9990 -0.8332 45 1 4.8272 -5.9594 0.1113 46 1 5.0086 -6.1193 -1.6572 47 1 0.4996 -4.5714 -0.7357 48 1 0.3872 -5.1486 0.9606 49 1 0.2622 -6.8584 -1.2471 50 1 0.8437 -7.3723 0.3609 51 1 0.3790 -10.0126 -0.9413 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049469607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:56 Heat of formation + Delta-G solvation = 25.590512 kcal Electronic energy + Delta-G solvation = -32207.127423 eV Core-core repulsion = 28109.390330 eV Total energy + Delta-G solvation = -4097.737092 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.65248 -40.12821 -37.71964 -36.16629 -35.51191 -34.69982 -32.59945 -32.04232 -32.02426 -29.03286 -28.07628 -27.68762 -27.38789 -24.97708 -24.38505 -23.38688 -22.69930 -21.59270 -21.30147 -20.16562 -19.58249 -18.88477 -17.14753 -17.02870 -16.50961 -16.10274 -15.65723 -15.19209 -14.93791 -14.76236 -14.61957 -14.22571 -14.01282 -13.79271 -13.63922 -13.58787 -13.27516 -13.08475 -12.90009 -12.71126 -12.67268 -12.36414 -12.12738 -12.05957 -11.79836 -11.77418 -11.60197 -11.51494 -11.35440 -11.23372 -10.86172 -10.78361 -10.57787 -10.37131 -10.09978 -9.96823 -9.77254 -9.66340 -9.54124 -9.03411 -8.91438 -8.52613 -8.10168 -6.76293 -5.64405 -2.98168 1.00685 1.88342 2.26869 3.15698 3.42006 3.43893 3.48613 3.50755 3.57853 4.31764 4.47183 4.53507 4.55239 4.60010 4.78425 5.03565 5.08966 5.12632 5.16635 5.30501 5.31705 5.34573 5.36067 5.44021 5.47325 5.55320 5.61570 5.63537 5.70887 5.71643 5.72698 5.75504 5.85585 5.94048 5.96630 6.16109 6.19614 6.29746 6.40686 6.51793 6.58175 6.66220 6.81965 6.87510 6.98664 7.28840 7.34616 7.64509 7.71825 7.79720 7.90392 8.31142 8.42739 9.25568 9.89324 10.58228 11.47786 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020788 B = 0.002763 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.621414 B =10131.709863 C =11118.871064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.035 3.965 3 O -0.194 6.194 4 C 0.196 3.804 5 C 0.003 3.997 6 C -0.151 4.151 7 C -0.150 4.150 8 N -0.454 5.454 9 C -0.065 4.065 10 C 0.601 3.399 11 O -0.529 6.529 12 N -0.578 5.578 13 C 0.076 3.924 14 C -0.125 4.125 15 C -0.117 4.117 16 C 0.160 3.840 17 H 0.018 0.982 18 C 0.114 3.886 19 H 0.081 0.919 20 C -0.135 4.135 21 C 0.173 3.827 22 N -0.593 5.593 23 C -0.224 4.224 24 H 0.078 0.922 25 C -0.009 4.009 26 N -0.921 5.921 27 Si 0.910 3.090 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.282 1.282 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.116 0.884 34 H 0.115 0.885 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.137 0.863 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.087 0.913 48 H 0.059 0.941 49 H 0.039 0.961 50 H 0.055 0.945 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.078 26.082 3.758 27.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.021 4.021 3 O -0.082 6.082 4 C -0.012 4.012 5 C -0.017 4.017 6 C -0.209 4.209 7 C -0.208 4.208 8 N -0.183 5.183 9 C -0.185 4.185 10 C 0.387 3.613 11 O -0.407 6.407 12 N -0.309 5.309 13 C -0.047 4.047 14 C -0.164 4.164 15 C -0.156 4.156 16 C 0.051 3.949 17 H 0.035 0.965 18 C 0.010 3.990 19 H 0.099 0.901 20 C -0.173 4.173 21 C 0.049 3.951 22 N -0.318 5.318 23 C -0.352 4.352 24 H 0.096 0.904 25 C -0.205 4.205 26 N -0.568 5.568 27 Si 0.741 3.259 28 H -0.217 1.217 29 H -0.217 1.217 30 H -0.208 1.208 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.135 0.865 34 H 0.133 0.867 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.154 0.846 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.106 0.894 48 H 0.078 0.922 49 H 0.057 0.943 50 H 0.074 0.926 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.897 25.337 3.674 26.514 hybrid contribution -0.035 -0.679 -0.242 0.721 sum 6.862 24.658 3.431 25.824 Atomic orbital electron populations 1.20618 0.82479 1.05557 1.04601 1.23720 0.95086 0.83124 1.00126 1.84275 1.17832 1.36273 1.69781 1.26324 0.84114 0.90412 1.00386 1.19788 0.89888 0.94324 0.97661 1.21904 1.03157 0.99562 0.96237 1.21900 1.03161 0.99518 0.96234 1.70475 1.21417 1.08164 1.18239 1.21710 0.88454 0.95952 1.12376 1.16712 0.85258 0.82050 0.77230 1.90761 1.16426 1.82207 1.51338 1.47724 1.06745 1.06432 1.69966 1.22638 0.78559 1.04528 0.98943 1.21894 0.99499 0.95743 0.99224 1.21491 0.97357 0.94678 1.02072 1.20743 0.91613 0.88327 0.94212 0.96495 1.22460 0.98619 0.78332 0.99584 0.90115 1.23058 0.93114 0.99172 1.01949 1.21731 0.86326 0.89535 0.97542 1.44091 1.11260 1.03112 1.73297 1.18997 0.97669 0.84359 1.34156 0.90399 1.24798 0.96328 0.97802 1.01555 1.69946 1.08576 1.26935 1.51350 0.86147 0.77749 0.83758 0.78284 1.21677 1.21733 1.20767 0.89165 0.90343 0.86528 0.86673 0.91830 0.90766 0.91774 0.91830 0.90767 0.91833 0.84632 0.92551 0.92152 0.91192 0.91750 0.91861 0.89436 0.92236 0.94299 0.92630 0.93783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 9.93 36.01 0.36 -0.41 16 2 C 0.04 0.45 7.44 -35.08 -0.26 0.19 16 3 O -0.19 -2.20 10.73 6.53 0.07 -2.13 16 4 C 0.20 2.09 6.81 -13.08 -0.09 2.00 16 5 C 0.00 0.02 3.39 -91.77 -0.31 -0.29 16 6 C -0.15 -0.82 9.18 37.16 0.34 -0.48 16 7 C -0.15 -0.79 9.18 37.16 0.34 -0.45 16 8 N -0.45 -5.97 7.79 -7.65 -0.06 -6.03 16 9 C -0.07 -0.97 6.78 -83.02 -0.56 -1.53 16 10 C 0.60 10.57 7.71 -12.52 -0.10 10.47 16 11 O -0.53 -10.14 11.51 5.27 0.06 -10.08 16 12 N -0.58 -10.24 2.91 -165.25 -0.48 -10.72 16 13 C 0.08 1.13 6.20 -3.44 -0.02 1.11 16 14 C -0.12 -1.86 5.94 -26.37 -0.16 -2.02 16 15 C -0.12 -2.18 5.43 -27.19 -0.15 -2.33 16 16 C 0.16 3.54 2.60 -68.36 -0.18 3.36 16 17 H 0.02 0.42 8.03 -51.93 -0.42 0.00 16 18 C 0.11 2.31 3.31 -66.80 -0.22 2.09 16 19 H 0.08 1.66 8.13 -51.93 -0.42 1.24 16 20 C -0.13 -2.94 5.11 -25.19 -0.13 -3.07 16 21 C 0.17 4.48 5.47 -1.69 -0.01 4.48 16 22 N -0.59 -15.70 3.35 -163.28 -0.55 -16.24 16 23 C -0.22 -6.33 9.95 -15.06 -0.15 -6.48 16 24 H 0.08 2.12 7.34 -52.49 -0.39 1.73 16 25 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 26 N -0.92 -27.73 10.46 55.49 0.58 -27.15 16 27 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.12 1.38 6.40 -51.93 -0.33 1.05 16 34 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.14 1.91 4.03 -61.78 -0.25 1.66 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.06 1.19 8.11 -51.93 -0.42 0.77 16 46 H 0.06 1.21 7.73 -51.93 -0.40 0.81 16 47 H 0.09 1.98 6.02 -51.93 -0.31 1.67 16 48 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.04 1.10 7.81 -51.93 -0.41 0.69 16 50 H 0.06 1.56 7.19 -51.93 -0.37 1.19 16 51 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 392.45 15.07 5.91 5.91 Total: -1.00 -33.16 392.45 -9.23 -42.39 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -8.35 Total: 0.25 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -1.39 Total: 6.31 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: -0.51 Total: -60.15 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.13 Total: -12.21 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.16 -9.23 -42.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049469607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.979 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds