Wall clock time and date at job start Wed Apr 1 2020 05:19:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 O 1.34250 * 126.52506 * 2 1
4 4 C 1.34049 * 108.22777 * 180.23176 * 3 2 1
5 5 C 1.50702 * 125.38395 * 179.80495 * 4 3 2
6 6 C 1.53004 * 109.46840 * 299.96092 * 5 4 3
7 7 C 1.53000 * 109.46775 * 59.95701 * 5 4 3
8 8 N 1.29935 * 109.24516 * 359.77105 * 4 3 2
9 9 C 1.36070 * 108.47237 * 359.97438 * 8 4 3
10 10 C 1.47423 * 126.44646 * 179.97438 * 9 8 4
11 11 O 1.21610 * 119.99868 * 184.83551 * 10 9 8
12 12 N 1.34774 * 120.00348 * 4.83140 * 10 9 8
13 13 C 1.47858 * 122.22446 * 354.27093 * 12 10 9
14 14 C 1.52718 * 111.06006 * 232.46830 * 13 12 10
15 15 C 1.53967 * 111.08870 * 311.15514 * 14 13 12
16 16 C 1.51080 * 107.29804 * 57.75791 * 15 14 13
17 17 H 1.08992 * 108.73148 * 50.43112 * 16 15 14
18 18 C 1.45717 * 122.22983 * 174.25138 * 12 10 9
19 19 H 1.09005 * 111.64494 * 240.86988 * 18 12 10
20 20 C 1.53432 * 116.37146 * 9.91783 * 18 12 10
21 21 C 1.55479 * 101.67023 * 152.73489 * 20 18 12
22 22 N 1.45023 * 119.19715 * 175.70294 * 16 15 14
23 23 C 1.36937 * 126.55954 * 330.57747 * 22 16 15
24 24 H 1.08000 * 120.00258 * 0.02562 * 23 22 16
25 25 C 1.38816 * 120.00053 * 180.02562 * 23 22 16
26 26 N 1.31615 * 120.00052 * 359.97438 * 25 23 22
27 27 Si 1.86796 * 120.00126 * 180.02562 * 25 23 22
28 28 H 1.48494 * 109.47630 * 89.99546 * 27 25 23
29 29 H 1.48497 * 109.47149 * 209.99692 * 27 25 23
30 30 H 1.48501 * 109.47254 * 329.99461 * 27 25 23
31 31 H 1.09000 * 109.47004 * 270.15992 * 1 2 3
32 32 H 1.09000 * 109.46936 * 30.16104 * 1 2 3
33 33 H 1.09004 * 109.47148 * 150.15858 * 1 2 3
34 34 H 1.08996 * 109.47570 * 179.97438 * 5 4 3
35 35 H 1.08996 * 109.47148 * 59.99608 * 6 5 4
36 36 H 1.09003 * 109.46795 * 179.97438 * 6 5 4
37 37 H 1.08994 * 109.47126 * 299.99209 * 6 5 4
38 38 H 1.09001 * 109.47293 * 60.00181 * 7 5 4
39 39 H 1.09004 * 109.46844 * 180.02562 * 7 5 4
40 40 H 1.09001 * 109.46991 * 300.00062 * 7 5 4
41 41 H 1.08998 * 109.15820 * 352.87244 * 13 12 10
42 42 H 1.08996 * 109.15618 * 112.11263 * 13 12 10
43 43 H 1.09000 * 109.07392 * 71.98456 * 14 13 12
44 44 H 1.08993 * 109.06861 * 191.01101 * 14 13 12
45 45 H 1.09000 * 110.76545 * 297.81756 * 15 14 13
46 46 H 1.09001 * 109.04413 * 176.72432 * 15 14 13
47 47 H 1.08999 * 110.98795 * 34.64060 * 20 18 12
48 48 H 1.09004 * 111.02293 * 270.83857 * 20 18 12
49 49 H 1.09002 * 109.95657 * 218.02131 * 21 20 18
50 50 H 1.08995 * 109.96461 * 96.78046 * 21 20 18
51 51 H 0.96993 * 120.00454 * 180.02562 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 8 2.3060 1.0788 0.0000
4 6 3.5787 0.6580 -0.0052
5 6 4.7930 1.5506 -0.0111
6 6 4.7718 2.4320 -1.2616
7 6 4.7815 2.4355 1.2369
8 7 3.6002 -0.6412 -0.0034
9 6 2.3170 -1.0936 0.0035
10 6 1.8853 -2.5032 0.0071
11 8 0.7034 -2.7774 -0.0754
12 7 2.8005 -3.4881 0.1017
13 6 4.2541 -3.2184 0.0795
14 6 4.9550 -4.0738 -0.9737
15 6 4.5359 -5.5507 -0.8563
16 6 3.0334 -5.6045 -1.0056
17 1 2.7505 -5.0493 -1.8998
18 6 2.4233 -4.8894 0.2330
19 1 2.7940 -5.3201 1.1633
20 6 0.9394 -5.2184 0.0234
21 6 1.0106 -6.6902 -0.4727
22 7 2.3707 -6.8942 -1.0297
23 6 2.8987 -8.0744 -1.4810
24 1 3.9066 -8.1021 -1.8678
25 6 2.1384 -9.2351 -1.4413
26 7 0.9102 -9.2015 -0.9694
27 14 2.8589 -10.8451 -2.0562
28 1 3.5348 -11.5454 -0.9347
29 1 1.7705 -11.7023 -2.5909
30 1 3.8441 -10.5676 -3.1321
31 1 -0.3633 0.0029 1.0277
32 1 -0.3633 0.8885 -0.5163
33 1 -0.3634 -0.8914 -0.5114
34 1 5.6944 0.9378 -0.0141
35 1 3.8703 3.0448 -1.2589
36 1 5.6498 3.0780 -1.2657
37 1 4.7800 1.8016 -2.1507
38 1 4.7965 1.8076 2.1278
39 1 5.6595 3.0814 1.2324
40 1 3.8800 3.0483 1.2395
41 1 4.4191 -2.1651 -0.1474
42 1 4.6746 -3.4432 1.0597
43 1 4.6982 -3.6998 -1.9648
44 1 6.0332 -3.9990 -0.8332
45 1 4.8272 -5.9594 0.1113
46 1 5.0086 -6.1193 -1.6572
47 1 0.4996 -4.5714 -0.7357
48 1 0.3872 -5.1486 0.9606
49 1 0.2622 -6.8584 -1.2471
50 1 0.8437 -7.3723 0.3609
51 1 0.3790 -10.0126 -0.9413
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001049469607.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:19:56
Heat of formation + Delta-G solvation = 25.590512 kcal
Electronic energy + Delta-G solvation = -32207.127423 eV
Core-core repulsion = 28109.390330 eV
Total energy + Delta-G solvation = -4097.737092 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-43.65248 -40.12821 -37.71964 -36.16629 -35.51191 -34.69982 -32.59945 -32.04232
-32.02426 -29.03286 -28.07628 -27.68762 -27.38789 -24.97708 -24.38505 -23.38688
-22.69930 -21.59270 -21.30147 -20.16562 -19.58249 -18.88477 -17.14753 -17.02870
-16.50961 -16.10274 -15.65723 -15.19209 -14.93791 -14.76236 -14.61957 -14.22571
-14.01282 -13.79271 -13.63922 -13.58787 -13.27516 -13.08475 -12.90009 -12.71126
-12.67268 -12.36414 -12.12738 -12.05957 -11.79836 -11.77418 -11.60197 -11.51494
-11.35440 -11.23372 -10.86172 -10.78361 -10.57787 -10.37131 -10.09978 -9.96823
-9.77254 -9.66340 -9.54124 -9.03411 -8.91438 -8.52613 -8.10168 -6.76293
-5.64405 -2.98168 1.00685 1.88342 2.26869 3.15698 3.42006 3.43893
3.48613 3.50755 3.57853 4.31764 4.47183 4.53507 4.55239 4.60010
4.78425 5.03565 5.08966 5.12632 5.16635 5.30501 5.31705 5.34573
5.36067 5.44021 5.47325 5.55320 5.61570 5.63537 5.70887 5.71643
5.72698 5.75504 5.85585 5.94048 5.96630 6.16109 6.19614 6.29746
6.40686 6.51793 6.58175 6.66220 6.81965 6.87510 6.98664 7.28840
7.34616 7.64509 7.71825 7.79720 7.90392 8.31142 8.42739 9.25568
9.89324 10.58228 11.47786
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.020788 B = 0.002763 C = 0.002518
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1346.621414 B =10131.709863 C =11118.871064
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 C 0.035 3.965
3 O -0.194 6.194
4 C 0.196 3.804
5 C 0.003 3.997
6 C -0.151 4.151
7 C -0.150 4.150
8 N -0.454 5.454
9 C -0.065 4.065
10 C 0.601 3.399
11 O -0.529 6.529
12 N -0.578 5.578
13 C 0.076 3.924
14 C -0.125 4.125
15 C -0.117 4.117
16 C 0.160 3.840
17 H 0.018 0.982
18 C 0.114 3.886
19 H 0.081 0.919
20 C -0.135 4.135
21 C 0.173 3.827
22 N -0.593 5.593
23 C -0.224 4.224
24 H 0.078 0.922
25 C -0.009 4.009
26 N -0.921 5.921
27 Si 0.910 3.090
28 H -0.289 1.289
29 H -0.291 1.291
30 H -0.282 1.282
31 H 0.090 0.910
32 H 0.078 0.922
33 H 0.116 0.884
34 H 0.115 0.885
35 H 0.063 0.937
36 H 0.073 0.927
37 H 0.063 0.937
38 H 0.063 0.937
39 H 0.073 0.927
40 H 0.063 0.937
41 H 0.137 0.863
42 H 0.056 0.944
43 H 0.060 0.940
44 H 0.069 0.931
45 H 0.064 0.936
46 H 0.063 0.937
47 H 0.087 0.913
48 H 0.059 0.941
49 H 0.039 0.961
50 H 0.055 0.945
51 H 0.252 0.748
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.078 26.082 3.758 27.286
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.133 4.133
2 C -0.021 4.021
3 O -0.082 6.082
4 C -0.012 4.012
5 C -0.017 4.017
6 C -0.209 4.209
7 C -0.208 4.208
8 N -0.183 5.183
9 C -0.185 4.185
10 C 0.387 3.613
11 O -0.407 6.407
12 N -0.309 5.309
13 C -0.047 4.047
14 C -0.164 4.164
15 C -0.156 4.156
16 C 0.051 3.949
17 H 0.035 0.965
18 C 0.010 3.990
19 H 0.099 0.901
20 C -0.173 4.173
21 C 0.049 3.951
22 N -0.318 5.318
23 C -0.352 4.352
24 H 0.096 0.904
25 C -0.205 4.205
26 N -0.568 5.568
27 Si 0.741 3.259
28 H -0.217 1.217
29 H -0.217 1.217
30 H -0.208 1.208
31 H 0.108 0.892
32 H 0.097 0.903
33 H 0.135 0.865
34 H 0.133 0.867
35 H 0.082 0.918
36 H 0.092 0.908
37 H 0.082 0.918
38 H 0.082 0.918
39 H 0.092 0.908
40 H 0.082 0.918
41 H 0.154 0.846
42 H 0.074 0.926
43 H 0.078 0.922
44 H 0.088 0.912
45 H 0.082 0.918
46 H 0.081 0.919
47 H 0.106 0.894
48 H 0.078 0.922
49 H 0.057 0.943
50 H 0.074 0.926
51 H 0.062 0.938
Dipole moment (debyes) X Y Z Total
from point charges 6.897 25.337 3.674 26.514
hybrid contribution -0.035 -0.679 -0.242 0.721
sum 6.862 24.658 3.431 25.824
Atomic orbital electron populations
1.20618 0.82479 1.05557 1.04601 1.23720 0.95086 0.83124 1.00126
1.84275 1.17832 1.36273 1.69781 1.26324 0.84114 0.90412 1.00386
1.19788 0.89888 0.94324 0.97661 1.21904 1.03157 0.99562 0.96237
1.21900 1.03161 0.99518 0.96234 1.70475 1.21417 1.08164 1.18239
1.21710 0.88454 0.95952 1.12376 1.16712 0.85258 0.82050 0.77230
1.90761 1.16426 1.82207 1.51338 1.47724 1.06745 1.06432 1.69966
1.22638 0.78559 1.04528 0.98943 1.21894 0.99499 0.95743 0.99224
1.21491 0.97357 0.94678 1.02072 1.20743 0.91613 0.88327 0.94212
0.96495 1.22460 0.98619 0.78332 0.99584 0.90115 1.23058 0.93114
0.99172 1.01949 1.21731 0.86326 0.89535 0.97542 1.44091 1.11260
1.03112 1.73297 1.18997 0.97669 0.84359 1.34156 0.90399 1.24798
0.96328 0.97802 1.01555 1.69946 1.08576 1.26935 1.51350 0.86147
0.77749 0.83758 0.78284 1.21677 1.21733 1.20767 0.89165 0.90343
0.86528 0.86673 0.91830 0.90766 0.91774 0.91830 0.90767 0.91833
0.84632 0.92551 0.92152 0.91192 0.91750 0.91861 0.89436 0.92236
0.94299 0.92630 0.93783
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.77 9.93 36.01 0.36 -0.41 16
2 C 0.04 0.45 7.44 -35.08 -0.26 0.19 16
3 O -0.19 -2.20 10.73 6.53 0.07 -2.13 16
4 C 0.20 2.09 6.81 -13.08 -0.09 2.00 16
5 C 0.00 0.02 3.39 -91.77 -0.31 -0.29 16
6 C -0.15 -0.82 9.18 37.16 0.34 -0.48 16
7 C -0.15 -0.79 9.18 37.16 0.34 -0.45 16
8 N -0.45 -5.97 7.79 -7.65 -0.06 -6.03 16
9 C -0.07 -0.97 6.78 -83.02 -0.56 -1.53 16
10 C 0.60 10.57 7.71 -12.52 -0.10 10.47 16
11 O -0.53 -10.14 11.51 5.27 0.06 -10.08 16
12 N -0.58 -10.24 2.91 -165.25 -0.48 -10.72 16
13 C 0.08 1.13 6.20 -3.44 -0.02 1.11 16
14 C -0.12 -1.86 5.94 -26.37 -0.16 -2.02 16
15 C -0.12 -2.18 5.43 -27.19 -0.15 -2.33 16
16 C 0.16 3.54 2.60 -68.36 -0.18 3.36 16
17 H 0.02 0.42 8.03 -51.93 -0.42 0.00 16
18 C 0.11 2.31 3.31 -66.80 -0.22 2.09 16
19 H 0.08 1.66 8.13 -51.93 -0.42 1.24 16
20 C -0.13 -2.94 5.11 -25.19 -0.13 -3.07 16
21 C 0.17 4.48 5.47 -1.69 -0.01 4.48 16
22 N -0.59 -15.70 3.35 -163.28 -0.55 -16.24 16
23 C -0.22 -6.33 9.95 -15.06 -0.15 -6.48 16
24 H 0.08 2.12 7.34 -52.49 -0.39 1.73 16
25 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16
26 N -0.92 -27.73 10.46 55.49 0.58 -27.15 16
27 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16
28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16
29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16
30 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16
31 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16
32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16
33 H 0.12 1.38 6.40 -51.93 -0.33 1.05 16
34 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16
35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
36 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16
37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
38 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16
39 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16
40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16
41 H 0.14 1.91 4.03 -61.78 -0.25 1.66 16
42 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16
43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16
44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
45 H 0.06 1.19 8.11 -51.93 -0.42 0.77 16
46 H 0.06 1.21 7.73 -51.93 -0.40 0.81 16
47 H 0.09 1.98 6.02 -51.93 -0.31 1.67 16
48 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16
49 H 0.04 1.10 7.81 -51.93 -0.41 0.69 16
50 H 0.06 1.56 7.19 -51.93 -0.37 1.19 16
51 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16
LS Contribution 392.45 15.07 5.91 5.91
Total: -1.00 -33.16 392.45 -9.23 -42.39
By element:
Atomic # 1 Polarization: 8.60 SS G_CDS: -8.35 Total: 0.25 kcal
Atomic # 6 Polarization: 7.70 SS G_CDS: -1.39 Total: 6.31 kcal
Atomic # 7 Polarization: -59.65 SS G_CDS: -0.51 Total: -60.15 kcal
Atomic # 8 Polarization: -12.34 SS G_CDS: 0.13 Total: -12.21 kcal
Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -33.16 -9.23 -42.39 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049469607.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 67.979 kcal
(2) G-P(sol) polarization free energy of solvation -33.164 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.816 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.389 kcal
(6) G-S(sol) free energy of system = (1) + (5) 25.591 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.94 seconds