Wall clock time and date at job start Wed Apr 1 2020 05:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.34250 * 126.52506 * 2 1 4 4 C 1.34049 * 108.22777 * 180.23176 * 3 2 1 5 5 C 1.50702 * 125.38395 * 179.80495 * 4 3 2 6 6 C 1.53004 * 109.46840 * 299.96092 * 5 4 3 7 7 C 1.53000 * 109.46775 * 59.95701 * 5 4 3 8 8 N 1.29935 * 109.24516 * 359.77105 * 4 3 2 9 9 C 1.36070 * 108.47237 * 359.97438 * 8 4 3 10 10 C 1.47423 * 126.44646 * 179.97438 * 9 8 4 11 11 O 1.21610 * 119.99868 * 184.83551 * 10 9 8 12 12 N 1.34774 * 120.00348 * 4.83140 * 10 9 8 13 13 C 1.47858 * 122.22446 * 354.27093 * 12 10 9 14 14 C 1.52718 * 111.06006 * 232.46830 * 13 12 10 15 15 C 1.53967 * 111.08870 * 311.15514 * 14 13 12 16 16 C 1.51080 * 107.29804 * 57.75791 * 15 14 13 17 17 H 1.08992 * 108.73148 * 50.43112 * 16 15 14 18 18 C 1.45717 * 122.22983 * 174.25138 * 12 10 9 19 19 H 1.09005 * 111.64494 * 240.86988 * 18 12 10 20 20 C 1.53432 * 116.37146 * 9.91783 * 18 12 10 21 21 C 1.55479 * 101.67023 * 152.73489 * 20 18 12 22 22 N 1.45023 * 119.19715 * 175.70294 * 16 15 14 23 23 C 1.36937 * 126.55954 * 330.57747 * 22 16 15 24 24 H 1.08000 * 120.00258 * 0.02562 * 23 22 16 25 25 C 1.38816 * 120.00053 * 180.02562 * 23 22 16 26 26 N 1.31615 * 120.00052 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00126 * 180.02562 * 25 23 22 28 28 H 1.48494 * 109.47630 * 89.99546 * 27 25 23 29 29 H 1.48497 * 109.47149 * 209.99692 * 27 25 23 30 30 H 1.48501 * 109.47254 * 329.99461 * 27 25 23 31 31 H 1.09000 * 109.47004 * 270.15992 * 1 2 3 32 32 H 1.09000 * 109.46936 * 30.16104 * 1 2 3 33 33 H 1.09004 * 109.47148 * 150.15858 * 1 2 3 34 34 H 1.08996 * 109.47570 * 179.97438 * 5 4 3 35 35 H 1.08996 * 109.47148 * 59.99608 * 6 5 4 36 36 H 1.09003 * 109.46795 * 179.97438 * 6 5 4 37 37 H 1.08994 * 109.47126 * 299.99209 * 6 5 4 38 38 H 1.09001 * 109.47293 * 60.00181 * 7 5 4 39 39 H 1.09004 * 109.46844 * 180.02562 * 7 5 4 40 40 H 1.09001 * 109.46991 * 300.00062 * 7 5 4 41 41 H 1.08998 * 109.15820 * 352.87244 * 13 12 10 42 42 H 1.08996 * 109.15618 * 112.11263 * 13 12 10 43 43 H 1.09000 * 109.07392 * 71.98456 * 14 13 12 44 44 H 1.08993 * 109.06861 * 191.01101 * 14 13 12 45 45 H 1.09000 * 110.76545 * 297.81756 * 15 14 13 46 46 H 1.09001 * 109.04413 * 176.72432 * 15 14 13 47 47 H 1.08999 * 110.98795 * 34.64060 * 20 18 12 48 48 H 1.09004 * 111.02293 * 270.83857 * 20 18 12 49 49 H 1.09002 * 109.95657 * 218.02131 * 21 20 18 50 50 H 1.08995 * 109.96461 * 96.78046 * 21 20 18 51 51 H 0.96993 * 120.00454 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0788 0.0000 4 6 3.5787 0.6580 -0.0052 5 6 4.7930 1.5506 -0.0111 6 6 4.7718 2.4320 -1.2616 7 6 4.7815 2.4355 1.2369 8 7 3.6002 -0.6412 -0.0034 9 6 2.3170 -1.0936 0.0035 10 6 1.8853 -2.5032 0.0071 11 8 0.7034 -2.7774 -0.0754 12 7 2.8005 -3.4881 0.1017 13 6 4.2541 -3.2184 0.0795 14 6 4.9550 -4.0738 -0.9737 15 6 4.5359 -5.5507 -0.8563 16 6 3.0334 -5.6045 -1.0056 17 1 2.7505 -5.0493 -1.8998 18 6 2.4233 -4.8894 0.2330 19 1 2.7940 -5.3201 1.1633 20 6 0.9394 -5.2184 0.0234 21 6 1.0106 -6.6902 -0.4727 22 7 2.3707 -6.8942 -1.0297 23 6 2.8987 -8.0744 -1.4810 24 1 3.9066 -8.1021 -1.8678 25 6 2.1384 -9.2351 -1.4413 26 7 0.9102 -9.2015 -0.9694 27 14 2.8589 -10.8451 -2.0562 28 1 3.5348 -11.5454 -0.9347 29 1 1.7705 -11.7023 -2.5909 30 1 3.8441 -10.5676 -3.1321 31 1 -0.3633 0.0029 1.0277 32 1 -0.3633 0.8885 -0.5163 33 1 -0.3634 -0.8914 -0.5114 34 1 5.6944 0.9378 -0.0141 35 1 3.8703 3.0448 -1.2589 36 1 5.6498 3.0780 -1.2657 37 1 4.7800 1.8016 -2.1507 38 1 4.7965 1.8076 2.1278 39 1 5.6595 3.0814 1.2324 40 1 3.8800 3.0483 1.2395 41 1 4.4191 -2.1651 -0.1474 42 1 4.6746 -3.4432 1.0597 43 1 4.6982 -3.6998 -1.9648 44 1 6.0332 -3.9990 -0.8332 45 1 4.8272 -5.9594 0.1113 46 1 5.0086 -6.1193 -1.6572 47 1 0.4996 -4.5714 -0.7357 48 1 0.3872 -5.1486 0.9606 49 1 0.2622 -6.8584 -1.2471 50 1 0.8437 -7.3723 0.3609 51 1 0.3790 -10.0126 -0.9413 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049469607.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:55 Heat of formation + Delta-G solvation = 4.884729 kcal Electronic energy + Delta-G solvation = -32208.025293 eV Core-core repulsion = 28109.390330 eV Total energy + Delta-G solvation = -4098.634962 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -44.58858 -41.63842 -39.28689 -37.08850 -36.67504 -35.84496 -34.25156 -33.84871 -32.93721 -30.94837 -29.71331 -28.43021 -28.07016 -26.51192 -26.15856 -24.45792 -23.73251 -22.85562 -22.69627 -21.69880 -21.25919 -20.03866 -18.73383 -18.04125 -17.86681 -17.23302 -17.05639 -16.74633 -16.33712 -16.04413 -15.88486 -15.47688 -15.45413 -15.13209 -14.93641 -14.55400 -14.39261 -14.25340 -14.17933 -13.88659 -13.76242 -13.55743 -13.42109 -13.18640 -13.01889 -12.92180 -12.72008 -12.59974 -12.50245 -12.41134 -12.29585 -12.11347 -12.05631 -11.95025 -11.84699 -11.76348 -11.67893 -11.45534 -10.97849 -10.75431 -10.44850 -9.93002 -9.54032 -8.92523 -7.84741 -5.21920 0.00164 0.90068 1.39144 1.44992 1.47797 1.56181 1.85746 2.16510 2.49717 2.69503 3.29674 3.33478 3.49479 3.57530 3.87668 3.93531 3.98240 4.06572 4.08549 4.10671 4.16296 4.24067 4.29302 4.30949 4.40228 4.55146 4.56711 4.57482 4.64535 4.73140 4.79363 4.83026 4.88277 4.90166 4.93908 5.02107 5.05632 5.06832 5.10536 5.13950 5.22123 5.33023 5.34156 5.37401 5.45675 5.46985 5.58640 5.66514 5.75727 6.16973 6.31789 6.50812 7.04571 7.06014 7.74163 8.44454 9.27159 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020788 B = 0.002763 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.621414 B =10131.709863 C =11118.871064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.046 3.954 3 O -0.190 6.190 4 C 0.209 3.791 5 C 0.002 3.998 6 C -0.148 4.148 7 C -0.147 4.147 8 N -0.472 5.472 9 C -0.096 4.096 10 C 0.595 3.405 11 O -0.555 6.555 12 N -0.583 5.583 13 C 0.075 3.925 14 C -0.114 4.114 15 C -0.111 4.111 16 C 0.155 3.845 17 H -0.004 1.004 18 C 0.130 3.870 19 H 0.081 0.919 20 C -0.117 4.117 21 C 0.184 3.816 22 N -0.611 5.611 23 C -0.234 4.234 24 H 0.087 0.913 25 C -0.069 4.069 26 N -0.954 5.954 27 Si 0.981 3.019 28 H -0.283 1.283 29 H -0.296 1.296 30 H -0.268 1.268 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.096 0.904 34 H 0.127 0.873 35 H 0.060 0.940 36 H 0.099 0.901 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.098 0.902 40 H 0.060 0.940 41 H 0.151 0.849 42 H 0.069 0.931 43 H 0.054 0.946 44 H 0.108 0.892 45 H 0.066 0.934 46 H 0.056 0.944 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.001 0.999 50 H 0.027 0.973 51 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.777 28.798 4.041 30.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.011 4.011 3 O -0.077 6.077 4 C 0.000 4.000 5 C -0.017 4.017 6 C -0.205 4.205 7 C -0.204 4.204 8 N -0.201 5.201 9 C -0.214 4.214 10 C 0.384 3.616 11 O -0.435 6.435 12 N -0.314 5.314 13 C -0.046 4.046 14 C -0.152 4.152 15 C -0.150 4.150 16 C 0.047 3.953 17 H 0.013 0.987 18 C 0.024 3.976 19 H 0.099 0.901 20 C -0.155 4.155 21 C 0.059 3.941 22 N -0.336 5.336 23 C -0.363 4.363 24 H 0.105 0.895 25 C -0.262 4.262 26 N -0.603 5.603 27 Si 0.809 3.191 28 H -0.210 1.210 29 H -0.223 1.223 30 H -0.193 1.193 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.114 0.886 34 H 0.145 0.855 35 H 0.079 0.921 36 H 0.117 0.883 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.167 0.833 42 H 0.088 0.912 43 H 0.073 0.927 44 H 0.126 0.874 45 H 0.084 0.916 46 H 0.074 0.926 47 H 0.097 0.903 48 H 0.086 0.914 49 H 0.020 0.980 50 H 0.046 0.954 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 9.642 28.088 3.954 29.959 hybrid contribution -0.882 -1.387 -0.355 1.682 sum 8.760 26.700 3.599 28.330 Atomic orbital electron populations 1.20683 0.81028 1.05888 1.05558 1.24058 0.95986 0.82851 0.98218 1.84322 1.18098 1.35601 1.69708 1.27243 0.84762 0.90223 0.97774 1.20121 0.88283 0.94317 0.99014 1.21908 1.04273 0.99388 0.94975 1.21901 1.04257 0.99332 0.94953 1.70315 1.20573 1.09424 1.19795 1.21330 0.89921 0.94765 1.15405 1.17087 0.84917 0.83208 0.76393 1.90736 1.17444 1.82944 1.52338 1.47790 1.08178 1.05092 1.70324 1.22865 0.76704 1.05394 0.99663 1.21858 1.01705 0.92664 0.99012 1.21457 0.94222 0.97482 1.01840 1.20876 0.94209 0.86146 0.94054 0.98684 1.22083 0.96679 0.80250 0.98540 0.90091 1.22810 0.94865 0.96027 1.01789 1.21445 0.85783 0.91564 0.95332 1.44349 1.11832 1.04264 1.73174 1.19407 0.98034 0.85164 1.33673 0.89498 1.25708 0.96782 1.01384 1.02300 1.70173 1.09960 1.27394 1.52797 0.85041 0.76941 0.79114 0.78019 1.20989 1.22299 1.19257 0.87791 0.87515 0.88579 0.85495 0.92082 0.88274 0.92765 0.92607 0.88303 0.92090 0.83253 0.91244 0.92670 0.87406 0.91552 0.92558 0.90256 0.91363 0.98030 0.95423 0.94394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.43 9.93 71.24 0.71 -0.72 16 2 C 0.05 1.09 7.44 25.19 0.19 1.28 16 3 O -0.19 -3.89 10.73 0.45 0.00 -3.89 16 4 C 0.21 3.97 6.81 88.39 0.60 4.58 16 5 C 0.00 0.02 3.39 -11.54 -0.04 -0.02 16 6 C -0.15 -1.13 9.18 71.98 0.66 -0.47 16 7 C -0.15 -1.06 9.18 71.98 0.66 -0.40 16 8 N -0.47 -11.59 7.79 -293.03 -2.28 -13.87 16 9 C -0.10 -2.77 6.78 40.41 0.27 -2.50 16 10 C 0.60 21.01 7.71 86.66 0.67 21.68 16 11 O -0.55 -21.80 11.51 -4.06 -0.05 -21.84 16 12 N -0.58 -20.50 2.91 -794.98 -2.32 -22.82 16 13 C 0.07 2.09 6.20 86.03 0.53 2.63 16 14 C -0.11 -3.14 5.94 30.83 0.18 -2.96 16 15 C -0.11 -4.05 5.43 30.30 0.16 -3.88 16 16 C 0.16 7.01 2.60 45.50 0.12 7.13 16 17 H 0.00 -0.21 8.03 -2.39 -0.02 -0.23 16 18 C 0.13 5.34 3.31 46.14 0.15 5.49 16 19 H 0.08 3.34 8.13 -2.38 -0.02 3.32 16 20 C -0.12 -5.32 5.11 31.59 0.16 -5.16 16 21 C 0.18 10.11 5.47 86.87 0.48 10.58 16 22 N -0.61 -33.58 3.35 -670.51 -2.25 -35.83 16 23 C -0.23 -13.54 9.95 84.03 0.84 -12.71 16 24 H 0.09 4.75 7.34 -2.91 -0.02 4.73 16 25 C -0.07 -4.07 5.49 84.86 0.47 -3.61 16 26 N -0.95 -59.93 10.46 21.65 0.23 -59.70 16 27 Si 0.98 47.08 29.55 68.60 2.03 49.11 16 28 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 29 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 30 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 31 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.11 1.38 8.14 -2.39 -0.02 1.37 16 33 H 0.10 2.29 6.40 -2.39 -0.02 2.28 16 34 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.06 0.51 8.14 -2.39 -0.02 0.50 16 36 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 37 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.10 0.26 8.14 -2.38 -0.02 0.24 16 40 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.15 3.89 4.03 -21.85 -0.09 3.80 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.07 2.38 8.11 -2.39 -0.02 2.36 16 46 H 0.06 2.10 7.73 -2.39 -0.02 2.09 16 47 H 0.08 3.78 6.02 -2.39 -0.01 3.76 16 48 H 0.07 2.95 8.14 -2.38 -0.02 2.93 16 49 H 0.00 0.09 7.81 -2.39 -0.02 0.07 16 50 H 0.03 1.65 7.19 -2.39 -0.02 1.63 16 51 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -75.41 392.45 3.02 -72.39 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 0.85 Total: 15.52 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 6.81 Total: 20.93 kcal Atomic # 7 Polarization: -125.60 SS G_CDS: -6.62 Total: -132.22 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.04 Total: -25.73 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -75.41 3.02 -72.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049469607.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.272 kcal (2) G-P(sol) polarization free energy of solvation -75.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.387 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds