Wall clock time and date at job start Wed Apr 1 2020 05:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.34261 * 126.52134 * 2 1 4 4 C 1.34051 * 108.22335 * 180.16265 * 3 2 1 5 5 C 1.50698 * 125.37639 * 179.83150 * 4 3 2 6 6 C 1.53001 * 109.47292 * 299.70108 * 5 4 3 7 7 C 1.52998 * 109.47189 * 59.69688 * 5 4 3 8 8 N 1.29933 * 109.24504 * 359.57266 * 4 3 2 9 9 C 1.36063 * 108.47698 * 0.26237 * 8 4 3 10 10 C 1.47424 * 126.45044 * 180.02562 * 9 8 4 11 11 O 1.21607 * 120.00151 * 175.11120 * 10 9 8 12 12 N 1.34774 * 119.99606 * 355.11585 * 10 9 8 13 13 C 1.47851 * 122.23343 * 5.72897 * 12 10 9 14 14 C 1.52716 * 111.06022 * 127.49332 * 13 12 10 15 15 C 1.53866 * 111.52407 * 48.53092 * 14 13 12 16 16 C 1.51073 * 107.34324 * 303.07168 * 15 14 13 17 17 H 1.09000 * 108.74137 * 308.53749 * 16 15 14 18 18 C 1.45728 * 122.22763 * 185.44126 * 12 10 9 19 19 H 1.09001 * 111.06814 * 119.49856 * 18 12 10 20 20 C 1.53435 * 116.37379 * 350.13516 * 18 12 10 21 21 C 1.55470 * 101.66935 * 207.27297 * 20 18 12 22 22 N 1.45030 * 119.18976 * 183.88905 * 16 15 14 23 23 C 1.36931 * 126.55905 * 28.76992 * 22 16 15 24 24 H 1.08003 * 119.99876 * 0.02562 * 23 22 16 25 25 C 1.38811 * 120.00043 * 179.97438 * 23 22 16 26 26 N 1.31622 * 119.99989 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99911 * 180.02562 * 25 23 22 28 28 H 1.48499 * 109.47492 * 0.02562 * 27 25 23 29 29 H 1.48499 * 109.47142 * 120.00685 * 27 25 23 30 30 H 1.48509 * 109.47076 * 239.99976 * 27 25 23 31 31 H 1.09004 * 109.46705 * 270.30625 * 1 2 3 32 32 H 1.09000 * 109.47785 * 30.30482 * 1 2 3 33 33 H 1.08996 * 109.46921 * 150.30727 * 1 2 3 34 34 H 1.08994 * 109.47351 * 179.69975 * 5 4 3 35 35 H 1.08991 * 109.47735 * 59.99858 * 6 5 4 36 36 H 1.09003 * 109.47245 * 180.02562 * 6 5 4 37 37 H 1.09004 * 109.47030 * 299.99446 * 6 5 4 38 38 H 1.09000 * 109.47150 * 60.00075 * 7 5 4 39 39 H 1.09003 * 109.47623 * 179.97438 * 7 5 4 40 40 H 1.09004 * 109.47297 * 300.00221 * 7 5 4 41 41 H 1.09005 * 109.16079 * 247.90428 * 13 12 10 42 42 H 1.09005 * 109.16065 * 7.13854 * 13 12 10 43 43 H 1.09006 * 109.06741 * 169.05761 * 14 13 12 44 44 H 1.08994 * 109.06836 * 287.99927 * 14 13 12 45 45 H 1.08996 * 109.88172 * 62.53696 * 15 14 13 46 46 H 1.09010 * 109.87638 * 183.54012 * 15 14 13 47 47 H 1.08994 * 110.99018 * 325.36629 * 20 18 12 48 48 H 1.09003 * 110.98488 * 89.14282 * 20 18 12 49 49 H 1.08996 * 109.96418 * 141.98317 * 21 20 18 50 50 H 1.09003 * 109.95762 * 263.22164 * 21 20 18 51 51 H 0.96995 * 119.99769 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0790 0.0000 4 6 3.5788 0.6581 -0.0036 5 6 4.7929 1.5508 -0.0085 6 6 4.7764 2.4274 -1.2624 7 6 4.7766 2.4407 1.2360 8 7 3.6003 -0.6410 0.0033 9 6 2.3171 -1.0935 0.0058 10 6 1.8855 -2.5032 0.0138 11 8 0.7041 -2.7768 0.1050 12 7 2.8002 -3.4885 -0.0798 13 6 4.2539 -3.2187 -0.0680 14 6 4.9608 -4.0667 0.9872 15 6 4.5424 -5.5447 0.8968 16 6 3.0395 -5.5969 1.0413 17 1 2.7539 -5.0403 1.9339 18 6 2.4225 -4.8914 -0.1934 19 1 2.7942 -5.3233 -1.1225 20 6 0.9406 -5.2187 0.0329 21 6 1.0169 -6.6851 0.5436 22 7 2.3769 -6.8865 1.0786 23 6 2.9079 -8.0634 1.5345 24 1 3.9181 -8.0882 1.9157 25 6 2.1475 -9.2244 1.5077 26 7 0.9162 -9.1940 1.0436 27 14 2.8716 -10.8298 2.1304 28 1 4.2623 -10.5978 2.5966 29 1 2.0504 -11.3388 3.2581 30 1 2.8775 -11.8292 1.0319 31 1 -0.3633 0.0055 1.0277 32 1 -0.3635 0.8872 -0.5185 33 1 -0.3633 -0.8927 -0.5090 34 1 5.6943 0.9382 -0.0053 35 1 3.8750 3.0401 -1.2657 36 1 5.6548 3.0728 -1.2661 37 1 4.7881 1.7934 -2.1490 38 1 4.7884 1.8163 2.1293 39 1 5.6550 3.0861 1.2327 40 1 3.8751 3.0534 1.2328 41 1 4.6686 -3.4496 -1.0492 42 1 4.4202 -2.1640 0.1515 43 1 6.0383 -3.9920 0.8407 44 1 4.7099 -3.6855 1.9770 45 1 4.8365 -5.9547 -0.0693 46 1 5.0131 -6.1129 1.6992 47 1 0.5072 -4.5641 0.7890 48 1 0.3806 -5.1583 -0.9003 49 1 0.2755 -6.8457 1.3263 50 1 0.8430 -7.3760 -0.2814 51 1 0.3850 -10.0054 1.0246 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049469608.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:59 Heat of formation + Delta-G solvation = 25.195796 kcal Electronic energy + Delta-G solvation = -32210.546929 eV Core-core repulsion = 28112.792721 eV Total energy + Delta-G solvation = -4097.754208 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.65293 -40.14684 -37.74766 -36.16884 -35.53505 -34.71800 -32.60253 -32.04976 -32.03272 -29.03775 -28.09423 -27.68827 -27.39090 -24.98835 -24.39716 -23.39458 -22.70628 -21.60440 -21.29437 -20.17875 -19.58482 -18.87656 -17.14171 -17.03913 -16.51427 -16.10196 -15.65599 -15.20011 -14.94185 -14.76567 -14.62428 -14.22860 -14.02819 -13.79104 -13.61998 -13.58457 -13.29122 -13.12117 -12.91273 -12.67574 -12.67427 -12.37205 -12.14207 -12.05901 -11.80026 -11.78194 -11.60159 -11.51571 -11.35600 -11.24005 -10.86100 -10.80647 -10.58151 -10.35637 -10.08748 -9.96871 -9.77304 -9.66702 -9.56010 -9.02594 -8.93145 -8.52687 -8.10435 -6.76138 -5.64671 -2.98722 1.00690 1.88320 2.26684 3.15680 3.42009 3.43449 3.48520 3.51174 3.57702 4.31659 4.47126 4.53433 4.54916 4.59694 4.78414 5.03116 5.09457 5.12667 5.16508 5.30405 5.32356 5.33999 5.35770 5.43924 5.47018 5.55713 5.61393 5.64255 5.70658 5.71560 5.72414 5.75189 5.85777 5.93490 5.96131 6.15284 6.20697 6.29733 6.40731 6.51379 6.58163 6.66290 6.82315 6.87709 6.98345 7.28337 7.34522 7.64826 7.72215 7.79904 7.90786 8.32206 8.42683 9.26473 9.89500 10.57895 11.47198 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020798 B = 0.002763 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.974508 B =10130.265736 C =11118.497550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.035 3.965 3 O -0.194 6.194 4 C 0.196 3.804 5 C 0.003 3.997 6 C -0.150 4.150 7 C -0.151 4.151 8 N -0.454 5.454 9 C -0.065 4.065 10 C 0.600 3.400 11 O -0.529 6.529 12 N -0.579 5.579 13 C 0.076 3.924 14 C -0.125 4.125 15 C -0.116 4.116 16 C 0.159 3.841 17 H 0.017 0.983 18 C 0.115 3.885 19 H 0.081 0.919 20 C -0.134 4.134 21 C 0.173 3.827 22 N -0.592 5.592 23 C -0.223 4.223 24 H 0.079 0.921 25 C -0.009 4.009 26 N -0.920 5.920 27 Si 0.910 3.090 28 H -0.280 1.280 29 H -0.291 1.291 30 H -0.291 1.291 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.056 0.944 42 H 0.137 0.863 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.087 0.913 48 H 0.059 0.941 49 H 0.037 0.963 50 H 0.056 0.944 51 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.109 26.083 -4.042 27.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.021 4.021 3 O -0.082 6.082 4 C -0.012 4.012 5 C -0.017 4.017 6 C -0.208 4.208 7 C -0.209 4.209 8 N -0.183 5.183 9 C -0.185 4.185 10 C 0.387 3.613 11 O -0.407 6.407 12 N -0.309 5.309 13 C -0.046 4.046 14 C -0.164 4.164 15 C -0.155 4.155 16 C 0.050 3.950 17 H 0.034 0.966 18 C 0.011 3.989 19 H 0.098 0.902 20 C -0.172 4.172 21 C 0.048 3.952 22 N -0.317 5.317 23 C -0.352 4.352 24 H 0.097 0.903 25 C -0.205 4.205 26 N -0.568 5.568 27 Si 0.741 3.259 28 H -0.206 1.206 29 H -0.218 1.218 30 H -0.218 1.218 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.154 0.846 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.106 0.894 48 H 0.078 0.922 49 H 0.055 0.945 50 H 0.074 0.926 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 6.939 25.341 -3.962 26.571 hybrid contribution -0.056 -0.679 0.317 0.752 sum 6.883 24.661 -3.645 25.862 Atomic orbital electron populations 1.20575 0.82467 1.05224 1.04720 1.23717 0.95088 0.83131 1.00154 1.84278 1.17831 1.36250 1.69796 1.26323 0.84112 0.90409 1.00376 1.19785 0.89890 0.94322 0.97664 1.21899 1.03155 0.99588 0.96166 1.21904 1.03156 0.99504 0.96300 1.70468 1.21424 1.08168 1.18245 1.21713 0.88452 0.95951 1.12349 1.16715 0.85266 0.82055 0.77265 1.90771 1.16449 1.82273 1.51190 1.47741 1.06741 1.06335 1.70133 1.22632 0.78534 1.04560 0.98884 1.21869 0.99489 0.95802 0.99234 1.21445 0.97251 0.94661 1.02126 1.20668 0.91663 0.88397 0.94285 0.96596 1.22369 0.98634 0.78288 0.99582 0.90153 1.23052 0.93046 0.99212 1.01900 1.21583 0.86267 0.89682 0.97656 1.43903 1.10585 1.03382 1.73792 1.19041 0.97513 0.84478 1.34128 0.90333 1.24807 0.96319 0.97828 1.01552 1.69967 1.08407 1.26840 1.51543 0.86073 0.78031 0.83844 0.77992 1.20551 1.21832 1.21811 0.88991 0.90410 0.86863 0.86674 0.91830 0.90768 0.91829 0.91788 0.90761 0.91820 0.92534 0.84612 0.91173 0.92253 0.91906 0.91671 0.89445 0.92228 0.94453 0.92599 0.93834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.74 9.83 36.01 0.35 -0.38 16 2 C 0.04 0.44 7.44 -35.08 -0.26 0.18 16 3 O -0.19 -2.20 10.73 6.50 0.07 -2.13 16 4 C 0.20 2.09 6.81 -13.08 -0.09 2.00 16 5 C 0.00 0.02 3.39 -91.77 -0.31 -0.29 16 6 C -0.15 -0.79 9.18 37.16 0.34 -0.45 16 7 C -0.15 -0.82 9.17 37.16 0.34 -0.48 16 8 N -0.45 -5.97 7.79 -7.65 -0.06 -6.03 16 9 C -0.06 -0.96 6.77 -83.02 -0.56 -1.53 16 10 C 0.60 10.57 7.71 -12.52 -0.10 10.47 16 11 O -0.53 -10.15 11.59 5.27 0.06 -10.09 16 12 N -0.58 -10.26 2.92 -165.54 -0.48 -10.75 16 13 C 0.08 1.14 6.21 -3.45 -0.02 1.12 16 14 C -0.13 -1.87 5.93 -26.43 -0.16 -2.02 16 15 C -0.12 -2.16 5.45 -27.25 -0.15 -2.31 16 16 C 0.16 3.52 2.55 -68.62 -0.17 3.34 16 17 H 0.02 0.40 8.06 -51.93 -0.42 -0.02 16 18 C 0.12 2.34 3.32 -67.06 -0.22 2.12 16 19 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 20 C -0.13 -2.93 5.11 -25.19 -0.13 -3.05 16 21 C 0.17 4.49 5.45 -2.17 -0.01 4.48 16 22 N -0.59 -15.68 3.33 -164.28 -0.55 -16.23 16 23 C -0.22 -6.32 9.94 -15.06 -0.15 -6.47 16 24 H 0.08 2.14 7.31 -52.48 -0.38 1.76 16 25 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 26 N -0.92 -27.73 10.45 55.49 0.58 -27.15 16 27 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.87 16 30 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.11 1.31 6.59 -51.93 -0.34 0.97 16 34 H 0.12 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.14 1.92 4.03 -61.77 -0.25 1.67 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.06 1.16 8.12 -51.93 -0.42 0.74 16 46 H 0.06 1.25 7.70 -51.92 -0.40 0.85 16 47 H 0.09 1.99 6.03 -51.93 -0.31 1.67 16 48 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.04 1.06 7.82 -51.93 -0.41 0.65 16 50 H 0.06 1.57 7.14 -51.93 -0.37 1.20 16 51 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 392.52 15.07 5.92 5.92 Total: -1.00 -33.22 392.52 -9.24 -42.46 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -8.36 Total: 0.13 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: -1.39 Total: 6.37 kcal Atomic # 7 Polarization: -59.64 SS G_CDS: -0.51 Total: -60.15 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: 0.13 Total: -12.21 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.22 -9.24 -42.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049469608.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.651 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds