Wall clock time and date at job start Wed Apr 1 2020 04:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.30019 * 127.33875 * 2 1 4 4 O 1.20658 * 112.30236 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.15741 * 359.97438 * 4 3 2 6 6 C 1.50703 * 126.82842 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47245 * 300.03064 * 6 5 4 8 8 C 1.53005 * 109.46830 * 60.02592 * 6 5 4 9 9 C 1.37360 * 106.34226 * 0.24394 * 5 4 3 10 10 C 1.47398 * 128.56260 * 179.75511 * 9 5 4 11 11 O 1.21606 * 120.00358 * 90.00241 * 10 9 5 12 12 N 1.34777 * 120.00104 * 269.99772 * 10 9 5 13 13 C 1.45739 * 117.76353 * 0.02562 * 12 10 9 14 14 C 1.53044 * 109.56243 * 141.07829 * 13 12 10 15 15 C 1.52941 * 108.49496 * 53.79906 * 14 13 12 16 16 C 1.52932 * 109.79280 * 294.01320 * 15 14 13 17 17 H 1.08995 * 110.50413 * 292.89347 * 16 15 14 18 18 C 1.44184 * 117.76125 * 179.73614 * 12 10 9 19 19 H 1.09001 * 109.23307 * 333.41591 * 18 12 10 20 20 C 1.54572 * 111.47720 * 93.66690 * 18 12 10 21 21 C 1.54064 * 103.67137 * 153.28498 * 20 18 12 22 22 N 1.46887 * 107.70616 * 342.84750 * 21 20 18 23 23 C 1.36940 * 125.58130 * 177.04950 * 22 21 20 24 24 H 1.07992 * 120.00164 * 175.66135 * 23 22 21 25 25 C 1.38813 * 119.99798 * 355.65581 * 23 22 21 26 26 N 1.31624 * 120.00106 * 7.44470 * 25 23 22 27 27 Si 1.86797 * 119.99990 * 187.44365 * 25 23 22 28 28 H 1.48500 * 109.47188 * 94.98537 * 27 25 23 29 29 H 1.48502 * 109.47278 * 214.98914 * 27 25 23 30 30 H 1.48502 * 109.47190 * 334.98832 * 27 25 23 31 31 H 1.08999 * 109.47245 * 90.02881 * 1 2 3 32 32 H 1.08997 * 109.47726 * 210.02646 * 1 2 3 33 33 H 1.08996 * 109.47457 * 330.02873 * 1 2 3 34 34 H 1.08993 * 109.47352 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47029 * 300.00049 * 7 6 5 36 36 H 1.08999 * 109.47563 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47511 * 59.99611 * 7 6 5 38 38 H 1.08993 * 109.47289 * 300.00205 * 8 6 5 39 39 H 1.09001 * 109.46780 * 60.00391 * 8 6 5 40 40 H 1.08999 * 109.46848 * 179.97438 * 8 6 5 41 41 H 1.09003 * 109.45154 * 261.11024 * 13 12 10 42 42 H 1.09004 * 109.45490 * 21.04765 * 13 12 10 43 43 H 1.08993 * 109.63419 * 173.50307 * 14 13 12 44 44 H 1.09006 * 109.63355 * 293.90040 * 14 13 12 45 45 H 1.08997 * 109.41644 * 54.10794 * 15 14 13 46 46 H 1.08997 * 109.42003 * 173.90911 * 15 14 13 47 47 H 1.08999 * 110.62520 * 34.73823 * 20 18 12 48 48 H 1.08998 * 110.71311 * 271.87966 * 20 18 12 49 49 H 1.09000 * 109.81083 * 223.29867 * 21 20 18 50 50 H 1.08993 * 109.80943 * 102.39642 * 21 20 18 51 51 H 0.96992 * 119.99651 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6494 -0.6008 0.0015 6 6 4.9711 -1.3247 0.0018 7 6 5.7650 -0.9375 -1.2475 8 6 5.7648 -0.9366 1.2509 9 6 2.3991 -1.1696 -0.0040 10 6 2.0400 -2.5992 -0.0104 11 8 1.8890 -3.1930 1.0400 12 7 1.8790 -3.2484 -1.1805 13 6 2.0721 -2.4899 -2.4099 14 6 2.7889 -3.3623 -3.4430 15 6 2.0045 -4.6651 -3.6057 16 6 2.0622 -5.4701 -2.3067 17 1 3.0777 -5.8181 -2.1180 18 6 1.5336 -4.6473 -1.1304 19 1 1.9029 -5.0752 -0.1984 20 6 0.0036 -4.8554 -1.2017 21 6 -0.1445 -6.2607 -1.8155 22 7 1.1384 -6.6140 -2.4375 23 6 1.4294 -7.8087 -3.0404 24 1 2.3809 -7.9479 -3.5318 25 6 0.5013 -8.8407 -3.0198 26 7 -0.7104 -8.6270 -2.5521 27 14 0.9719 -10.5329 -3.6557 28 1 1.4144 -11.3827 -2.5211 29 1 -0.2028 -11.1586 -4.3142 30 1 2.0785 -10.4026 -4.6374 31 1 -0.3634 -0.0005 -1.0276 32 1 -0.3634 -0.8897 0.5142 33 1 -0.3634 0.8902 0.5134 34 1 4.7962 -2.4005 0.0022 35 1 5.1995 -1.2139 -2.1374 36 1 6.7212 -1.4607 -1.2471 37 1 5.9399 0.1384 -1.2479 38 1 5.9397 0.1392 1.2506 39 1 5.1993 -1.2125 2.1410 40 1 6.7207 -1.4605 1.2514 41 1 1.1029 -2.1832 -2.8033 42 1 2.6747 -1.6060 -2.2003 43 1 2.8316 -2.8388 -4.3980 44 1 3.8001 -3.5807 -3.0996 45 1 0.9659 -4.4354 -3.8438 46 1 2.4396 -5.2515 -4.4150 47 1 -0.4562 -4.1059 -1.8458 48 1 -0.4366 -4.8245 -0.2051 49 1 -0.9312 -6.2533 -2.5700 50 1 -0.3873 -6.9812 -1.0345 51 1 -1.3589 -9.3481 -2.5381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049532530.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:39 Heat of formation + Delta-G solvation = 44.518065 kcal Electronic energy + Delta-G solvation = -32804.785340 eV Core-core repulsion = 28707.869008 eV Total energy + Delta-G solvation = -4096.916332 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.04103 -40.46886 -37.99895 -36.33745 -35.45230 -34.66040 -32.65789 -32.33240 -31.08726 -29.14405 -28.88097 -28.42302 -27.52489 -25.54306 -24.42947 -23.74211 -23.15339 -22.03657 -20.76134 -20.07180 -19.51896 -18.28345 -17.95254 -17.52207 -16.93466 -16.60093 -15.99208 -15.59711 -14.83097 -14.71117 -14.46078 -14.32568 -14.04800 -13.75015 -13.66700 -13.51734 -13.46592 -13.38868 -13.06251 -12.94570 -12.54510 -12.51704 -12.12910 -12.05223 -11.78746 -11.63169 -11.62658 -11.43844 -11.12909 -11.09380 -11.00384 -10.83680 -10.69780 -10.56506 -10.29555 -10.10659 -10.02881 -9.83438 -9.69252 -9.64237 -9.43387 -8.60081 -8.41787 -6.89974 -5.75878 -3.09258 1.15471 1.76482 2.39265 2.65779 3.14729 3.38427 3.43678 3.45586 3.90571 3.99161 4.43541 4.45535 4.53213 4.67602 4.72583 4.88436 4.96095 5.06891 5.18256 5.22002 5.28720 5.28860 5.33317 5.40534 5.42941 5.45341 5.47046 5.49798 5.51732 5.58138 5.65040 5.68464 5.83027 5.86399 5.87004 5.88910 5.94556 6.03472 6.16952 6.24672 6.32650 6.51067 6.53345 6.69080 6.90638 7.01885 7.40409 7.53143 7.61208 7.79875 8.06632 8.15987 8.22538 9.17147 9.77304 10.42125 11.35486 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.003113 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.443072 B = 8992.551027 C = 9600.668083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.054 3.946 3 N -0.358 5.358 4 O 0.098 5.902 5 C 0.020 3.980 6 C -0.017 4.017 7 C -0.149 4.149 8 C -0.149 4.149 9 C -0.236 4.236 10 C 0.587 3.413 11 O -0.524 6.524 12 N -0.573 5.573 13 C 0.111 3.889 14 C -0.130 4.130 15 C -0.131 4.131 16 C 0.163 3.837 17 H 0.056 0.944 18 C 0.135 3.865 19 H 0.094 0.906 20 C -0.150 4.150 21 C 0.178 3.822 22 N -0.595 5.595 23 C -0.230 4.230 24 H 0.079 0.921 25 C -0.004 4.004 26 N -0.917 5.917 27 Si 0.910 3.090 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.056 0.944 48 H 0.063 0.937 49 H 0.041 0.959 50 H 0.052 0.948 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.439 18.870 2.281 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.108 4.108 3 N -0.064 5.064 4 O 0.037 5.963 5 C -0.044 4.044 6 C -0.036 4.036 7 C -0.206 4.206 8 C -0.206 4.206 9 C -0.243 4.243 10 C 0.372 3.628 11 O -0.400 6.400 12 N -0.304 5.304 13 C -0.012 4.012 14 C -0.169 4.169 15 C -0.171 4.171 16 C 0.054 3.946 17 H 0.074 0.926 18 C 0.031 3.969 19 H 0.112 0.888 20 C -0.190 4.190 21 C 0.053 3.947 22 N -0.319 5.319 23 C -0.358 4.358 24 H 0.097 0.903 25 C -0.201 4.201 26 N -0.564 5.564 27 Si 0.740 3.260 28 H -0.216 1.216 29 H -0.218 1.218 30 H -0.206 1.206 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.059 0.941 50 H 0.071 0.929 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.021 19.591 2.765 21.745 hybrid contribution -0.112 -1.630 -0.422 1.687 sum 8.909 17.961 2.343 20.186 Atomic orbital electron populations 1.20232 0.85148 1.04335 1.03872 1.24734 0.98574 0.86482 1.01020 1.73615 0.89156 1.23323 1.20305 1.84490 1.21394 1.22519 1.67944 1.24606 0.96834 0.83635 0.99300 1.19917 0.86965 0.98795 0.97925 1.21894 1.00212 1.02518 0.96022 1.21874 1.00124 1.02405 0.96202 1.21953 0.92725 0.95532 1.14111 1.17089 0.77501 0.83970 0.84219 1.90825 1.50371 1.67399 1.31398 1.47022 1.67467 1.10446 1.05418 1.21481 1.00574 0.94148 0.84975 1.21838 0.99632 0.97433 0.98012 1.22141 1.00040 0.94507 1.00455 1.20813 0.94485 0.88167 0.91117 0.92638 1.21220 0.96331 0.78376 1.00936 0.88776 1.23092 0.94639 1.00460 1.00779 1.21073 0.88288 0.89042 0.96266 1.44495 1.09000 1.11530 1.66891 1.19006 1.00812 0.87615 1.28355 0.90348 1.24815 0.95933 0.98189 1.01135 1.69983 1.03570 1.31291 1.51544 0.86133 0.77264 0.84431 0.78129 1.21575 1.21796 1.20631 0.89591 0.89599 0.89978 0.87857 0.91838 0.90887 0.91619 0.91662 0.91856 0.90945 0.91825 0.90858 0.91064 0.91615 0.91913 0.91740 0.92539 0.91847 0.94125 0.92930 0.93687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.49 36.00 0.38 -0.41 16 2 C 0.05 0.68 7.59 -79.77 -0.61 0.07 16 3 N -0.36 -4.57 12.01 34.78 0.42 -4.15 16 4 O 0.10 1.16 11.06 18.66 0.21 1.36 16 5 C 0.02 0.22 5.64 -34.63 -0.20 0.03 16 6 C -0.02 -0.15 3.33 -91.77 -0.31 -0.45 16 7 C -0.15 -1.03 9.17 37.16 0.34 -0.69 16 8 C -0.15 -1.13 9.18 37.16 0.34 -0.79 16 9 C -0.24 -3.12 4.18 -102.89 -0.43 -3.55 16 10 C 0.59 9.18 7.07 -12.53 -0.09 9.10 16 11 O -0.52 -10.08 16.38 5.27 0.09 -9.99 16 12 N -0.57 -8.59 2.79 -168.69 -0.47 -9.06 16 13 C 0.11 1.36 6.11 -4.43 -0.03 1.33 16 14 C -0.13 -1.60 6.10 -26.74 -0.16 -1.76 16 15 C -0.13 -2.18 5.31 -26.80 -0.14 -2.32 16 16 C 0.16 3.16 3.27 -67.37 -0.22 2.94 16 17 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 18 C 0.14 2.46 2.76 -68.35 -0.19 2.27 16 19 H 0.09 1.90 7.08 -51.93 -0.37 1.53 16 20 C -0.15 -2.89 6.46 -25.35 -0.16 -3.06 16 21 C 0.18 4.25 5.40 -3.28 -0.02 4.23 16 22 N -0.59 -14.46 2.93 -163.92 -0.48 -14.94 16 23 C -0.23 -6.15 10.26 -15.06 -0.15 -6.30 16 24 H 0.08 2.02 7.84 -52.49 -0.41 1.61 16 25 C 0.00 -0.11 5.47 -17.43 -0.10 -0.21 16 26 N -0.92 -26.40 10.34 55.49 0.57 -25.82 16 27 Si 0.91 21.65 29.56 -169.99 -5.02 16.63 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 29 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 30 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 1.04 7.70 -51.93 -0.40 0.64 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.80 5.99 -51.93 -0.31 0.49 16 43 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.06 1.13 8.02 -51.93 -0.42 0.71 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 49 H 0.04 1.06 7.65 -51.93 -0.40 0.67 16 50 H 0.05 1.41 7.22 -51.93 -0.38 1.03 16 51 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 404.28 15.07 6.09 6.09 Total: -1.00 -31.26 404.28 -8.92 -40.18 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -8.58 Total: -0.72 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.74 Total: 0.43 kcal Atomic # 7 Polarization: -54.02 SS G_CDS: 0.04 Total: -53.98 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: 0.29 Total: -8.63 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.26 -8.92 -40.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049532530.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.697 kcal (2) G-P(sol) polarization free energy of solvation -31.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds