Wall clock time and date at job start Wed Apr 1 2020 04:36:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50690 * 1
3 3 N 1.30019 * 127.33875 * 2 1
4 4 O 1.20658 * 112.30236 * 179.97438 * 3 2 1
5 5 C 1.33491 * 113.15741 * 359.97438 * 4 3 2
6 6 C 1.50703 * 126.82842 * 179.97438 * 5 4 3
7 7 C 1.52996 * 109.47245 * 300.03064 * 6 5 4
8 8 C 1.53005 * 109.46830 * 60.02592 * 6 5 4
9 9 C 1.37360 * 106.34226 * 0.24394 * 5 4 3
10 10 C 1.47398 * 128.56260 * 179.75511 * 9 5 4
11 11 O 1.21606 * 120.00358 * 90.00241 * 10 9 5
12 12 N 1.34777 * 120.00104 * 269.99772 * 10 9 5
13 13 C 1.45739 * 117.76353 * 0.02562 * 12 10 9
14 14 C 1.53044 * 109.56243 * 141.07829 * 13 12 10
15 15 C 1.52941 * 108.49496 * 53.79906 * 14 13 12
16 16 C 1.52932 * 109.79280 * 294.01320 * 15 14 13
17 17 H 1.08995 * 110.50413 * 292.89347 * 16 15 14
18 18 C 1.44184 * 117.76125 * 179.73614 * 12 10 9
19 19 H 1.09001 * 109.23307 * 333.41591 * 18 12 10
20 20 C 1.54572 * 111.47720 * 93.66690 * 18 12 10
21 21 C 1.54064 * 103.67137 * 153.28498 * 20 18 12
22 22 N 1.46887 * 107.70616 * 342.84750 * 21 20 18
23 23 C 1.36940 * 125.58130 * 177.04950 * 22 21 20
24 24 H 1.07992 * 120.00164 * 175.66135 * 23 22 21
25 25 C 1.38813 * 119.99798 * 355.65581 * 23 22 21
26 26 N 1.31624 * 120.00106 * 7.44470 * 25 23 22
27 27 Si 1.86797 * 119.99990 * 187.44365 * 25 23 22
28 28 H 1.48500 * 109.47188 * 94.98537 * 27 25 23
29 29 H 1.48502 * 109.47278 * 214.98914 * 27 25 23
30 30 H 1.48502 * 109.47190 * 334.98832 * 27 25 23
31 31 H 1.08999 * 109.47245 * 90.02881 * 1 2 3
32 32 H 1.08997 * 109.47726 * 210.02646 * 1 2 3
33 33 H 1.08996 * 109.47457 * 330.02873 * 1 2 3
34 34 H 1.08993 * 109.47352 * 180.02562 * 6 5 4
35 35 H 1.09000 * 109.47029 * 300.00049 * 7 6 5
36 36 H 1.08999 * 109.47563 * 179.97438 * 7 6 5
37 37 H 1.09000 * 109.47511 * 59.99611 * 7 6 5
38 38 H 1.08993 * 109.47289 * 300.00205 * 8 6 5
39 39 H 1.09001 * 109.46780 * 60.00391 * 8 6 5
40 40 H 1.08999 * 109.46848 * 179.97438 * 8 6 5
41 41 H 1.09003 * 109.45154 * 261.11024 * 13 12 10
42 42 H 1.09004 * 109.45490 * 21.04765 * 13 12 10
43 43 H 1.08993 * 109.63419 * 173.50307 * 14 13 12
44 44 H 1.09006 * 109.63355 * 293.90040 * 14 13 12
45 45 H 1.08997 * 109.41644 * 54.10794 * 15 14 13
46 46 H 1.08997 * 109.42003 * 173.90911 * 15 14 13
47 47 H 1.08999 * 110.62520 * 34.73823 * 20 18 12
48 48 H 1.08998 * 110.71311 * 271.87966 * 20 18 12
49 49 H 1.09000 * 109.81083 * 223.29867 * 21 20 18
50 50 H 1.08993 * 109.80943 * 102.39642 * 21 20 18
51 51 H 0.96992 * 119.99651 * 179.97438 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5069 0.0000 0.0000
3 7 2.2955 1.0337 0.0000
4 8 3.4608 0.7207 0.0005
5 6 3.6494 -0.6008 0.0015
6 6 4.9711 -1.3247 0.0018
7 6 5.7650 -0.9375 -1.2475
8 6 5.7648 -0.9366 1.2509
9 6 2.3991 -1.1696 -0.0040
10 6 2.0400 -2.5992 -0.0104
11 8 1.8890 -3.1930 1.0400
12 7 1.8790 -3.2484 -1.1805
13 6 2.0721 -2.4899 -2.4099
14 6 2.7889 -3.3623 -3.4430
15 6 2.0045 -4.6651 -3.6057
16 6 2.0622 -5.4701 -2.3067
17 1 3.0777 -5.8181 -2.1180
18 6 1.5336 -4.6473 -1.1304
19 1 1.9029 -5.0752 -0.1984
20 6 0.0036 -4.8554 -1.2017
21 6 -0.1445 -6.2607 -1.8155
22 7 1.1384 -6.6140 -2.4375
23 6 1.4294 -7.8087 -3.0404
24 1 2.3809 -7.9479 -3.5318
25 6 0.5013 -8.8407 -3.0198
26 7 -0.7104 -8.6270 -2.5521
27 14 0.9719 -10.5329 -3.6557
28 1 1.4144 -11.3827 -2.5211
29 1 -0.2028 -11.1586 -4.3142
30 1 2.0785 -10.4026 -4.6374
31 1 -0.3634 -0.0005 -1.0276
32 1 -0.3634 -0.8897 0.5142
33 1 -0.3634 0.8902 0.5134
34 1 4.7962 -2.4005 0.0022
35 1 5.1995 -1.2139 -2.1374
36 1 6.7212 -1.4607 -1.2471
37 1 5.9399 0.1384 -1.2479
38 1 5.9397 0.1392 1.2506
39 1 5.1993 -1.2125 2.1410
40 1 6.7207 -1.4605 1.2514
41 1 1.1029 -2.1832 -2.8033
42 1 2.6747 -1.6060 -2.2003
43 1 2.8316 -2.8388 -4.3980
44 1 3.8001 -3.5807 -3.0996
45 1 0.9659 -4.4354 -3.8438
46 1 2.4396 -5.2515 -4.4150
47 1 -0.4562 -4.1059 -1.8458
48 1 -0.4366 -4.8245 -0.2051
49 1 -0.9312 -6.2533 -2.5700
50 1 -0.3873 -6.9812 -1.0345
51 1 -1.3589 -9.3481 -2.5381
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049532530.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:36:38
Heat of formation + Delta-G solvation = 27.753668 kcal
Electronic energy + Delta-G solvation = -32805.512298 eV
Core-core repulsion = 28707.869008 eV
Total energy + Delta-G solvation = -4097.643291 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-45.98706 -41.82112 -39.49002 -37.11775 -36.88469 -35.64756 -34.20214 -33.96212
-32.09063 -30.84131 -30.00230 -29.75481 -28.07588 -26.92888 -26.13337 -25.01545
-23.90676 -23.34273 -22.20129 -21.68354 -20.45764 -19.57673 -19.02682 -18.82929
-18.54148 -17.73120 -17.01779 -16.78966 -16.67002 -16.05074 -15.84149 -15.50403
-15.23762 -15.03734 -14.83749 -14.50154 -14.36946 -14.23320 -14.12996 -14.09284
-13.84557 -13.74909 -13.61441 -13.13471 -13.03999 -12.81983 -12.70060 -12.56734
-12.39794 -12.33603 -12.32286 -12.23301 -12.03870 -11.96617 -11.84247 -11.69758
-11.59708 -11.30485 -11.19600 -10.91722 -10.67122 -10.41823 -9.75620 -8.90463
-7.84869 -5.19727 0.23158 0.80433 1.18331 1.46791 1.49267 1.57250
1.63335 2.02473 2.50408 2.98116 3.12149 3.33176 3.41210 3.57042
3.72019 3.81902 3.85966 3.94875 3.99855 4.03315 4.06212 4.11463
4.16217 4.31303 4.41435 4.51482 4.55556 4.56055 4.58843 4.63460
4.68827 4.73010 4.79595 4.80860 4.89042 4.93602 4.95236 5.02713
5.05835 5.09511 5.16928 5.29409 5.31489 5.36602 5.42434 5.54961
5.57970 5.62410 5.73577 6.17773 6.19445 6.92022 7.09424 7.14438
7.76424 8.40629 9.25804
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.017404 B = 0.003113 C = 0.002916
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1608.443072 B = 8992.551027 C = 9600.668083
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.080 4.080
2 C 0.054 3.946
3 N -0.369 5.369
4 O 0.102 5.898
5 C 0.041 3.959
6 C -0.019 4.019
7 C -0.145 4.145
8 C -0.147 4.147
9 C -0.262 4.262
10 C 0.595 3.405
11 O -0.567 6.567
12 N -0.568 5.568
13 C 0.108 3.892
14 C -0.118 4.118
15 C -0.121 4.121
16 C 0.159 3.841
17 H 0.055 0.945
18 C 0.153 3.847
19 H 0.070 0.930
20 C -0.135 4.135
21 C 0.191 3.809
22 N -0.615 5.615
23 C -0.235 4.235
24 H 0.087 0.913
25 C -0.064 4.064
26 N -0.950 5.950
27 Si 0.975 3.025
28 H -0.291 1.291
29 H -0.297 1.297
30 H -0.264 1.264
31 H 0.103 0.897
32 H 0.075 0.925
33 H 0.095 0.905
34 H 0.091 0.909
35 H 0.064 0.936
36 H 0.088 0.912
37 H 0.073 0.927
38 H 0.074 0.926
39 H 0.046 0.954
40 H 0.091 0.909
41 H 0.073 0.927
42 H 0.095 0.905
43 H 0.104 0.896
44 H 0.077 0.923
45 H 0.048 0.952
46 H 0.055 0.945
47 H 0.074 0.926
48 H 0.062 0.938
49 H 0.010 0.990
50 H 0.012 0.988
51 H 0.246 0.754
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.713 21.197 0.992 24.238
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.108 4.108
3 N -0.076 5.076
4 O 0.041 5.959
5 C -0.023 4.023
6 C -0.039 4.039
7 C -0.203 4.203
8 C -0.204 4.204
9 C -0.269 4.269
10 C 0.382 3.618
11 O -0.446 6.446
12 N -0.297 5.297
13 C -0.013 4.013
14 C -0.157 4.157
15 C -0.161 4.161
16 C 0.052 3.948
17 H 0.073 0.927
18 C 0.048 3.952
19 H 0.088 0.912
20 C -0.175 4.175
21 C 0.066 3.934
22 N -0.339 5.339
23 C -0.364 4.364
24 H 0.104 0.896
25 C -0.257 4.257
26 N -0.599 5.599
27 Si 0.803 3.197
28 H -0.218 1.218
29 H -0.224 1.224
30 H -0.189 1.189
31 H 0.121 0.879
32 H 0.094 0.906
33 H 0.114 0.886
34 H 0.109 0.891
35 H 0.083 0.917
36 H 0.107 0.893
37 H 0.092 0.908
38 H 0.093 0.907
39 H 0.065 0.935
40 H 0.109 0.891
41 H 0.091 0.909
42 H 0.114 0.886
43 H 0.122 0.878
44 H 0.096 0.904
45 H 0.067 0.933
46 H 0.074 0.926
47 H 0.093 0.907
48 H 0.081 0.919
49 H 0.028 0.972
50 H 0.030 0.970
51 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 11.346 21.977 1.446 24.775
hybrid contribution -0.767 -2.313 0.016 2.437
sum 10.579 19.664 1.462 22.377
Atomic orbital electron populations
1.20337 0.83827 1.04521 1.05027 1.25055 0.99507 0.85979 1.00301
1.73615 0.89428 1.23448 1.21139 1.84490 1.21128 1.22489 1.67746
1.25021 0.97161 0.83380 0.96733 1.20091 0.86267 0.97765 0.99777
1.21906 1.00514 1.03281 0.94560 1.21887 1.00498 1.03297 0.94757
1.21692 0.93963 0.94193 1.17097 1.17311 0.76292 0.84736 0.83463
1.90805 1.52198 1.68607 1.32948 1.46967 1.67010 1.09087 1.06662
1.21726 1.01673 0.94385 0.83514 1.21795 0.99212 0.94967 0.99692
1.21924 1.00012 0.96288 0.97859 1.21015 0.93342 0.87296 0.93130
0.92711 1.20741 0.94965 0.80261 0.99241 0.91220 1.22894 0.95974
0.97962 1.00623 1.20720 0.87748 0.90696 0.94252 1.44732 1.10036
1.12468 1.66686 1.19395 1.00788 0.88573 1.27610 0.89561 1.25631
0.96022 1.01712 1.02306 1.70197 1.04506 1.31773 1.53389 0.85109
0.77015 0.79926 0.77602 1.21818 1.22392 1.18861 0.87892 0.90589
0.88601 0.89068 0.91733 0.89278 0.90800 0.90686 0.93515 0.89061
0.90853 0.88641 0.87785 0.90414 0.93344 0.92578 0.90694 0.91879
0.97212 0.96979 0.94481
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.46 10.49 71.23 0.75 -0.72 16
2 C 0.05 1.24 7.59 45.15 0.34 1.58 16
3 N -0.37 -8.61 12.01 -44.77 -0.54 -9.14 16
4 O 0.10 2.14 11.06 77.00 0.85 2.99 16
5 C 0.04 0.84 5.64 25.48 0.14 0.98 16
6 C -0.02 -0.30 3.33 -11.54 -0.04 -0.34 16
7 C -0.15 -1.48 9.17 71.98 0.66 -0.82 16
8 C -0.15 -1.92 9.18 71.98 0.66 -1.26 16
9 C -0.26 -6.51 4.18 -18.74 -0.08 -6.58 16
10 C 0.59 18.15 7.07 86.66 0.61 18.77 16
11 O -0.57 -22.11 16.38 -4.05 -0.07 -22.17 16
12 N -0.57 -16.27 2.79 -805.88 -2.25 -18.52 16
13 C 0.11 2.32 6.11 86.54 0.53 2.84 16
14 C -0.12 -2.47 6.10 30.59 0.19 -2.29 16
15 C -0.12 -3.82 5.31 30.55 0.16 -3.66 16
16 C 0.16 6.16 3.27 44.74 0.15 6.31 16
17 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16
18 C 0.15 5.58 2.76 45.95 0.13 5.71 16
19 H 0.07 2.90 7.08 -2.39 -0.02 2.89 16
20 C -0.14 -5.31 6.46 31.49 0.20 -5.11 16
21 C 0.19 9.59 5.40 86.67 0.47 10.06 16
22 N -0.61 -30.68 2.93 -672.53 -1.97 -32.66 16
23 C -0.23 -12.78 10.26 84.03 0.86 -11.92 16
24 H 0.09 4.44 7.84 -2.91 -0.02 4.42 16
25 C -0.06 -3.58 5.47 84.86 0.46 -3.11 16
26 N -0.95 -57.10 10.34 21.65 0.22 -56.87 16
27 Si 0.97 45.32 29.56 68.60 2.03 47.35 16
28 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16
29 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16
30 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16
31 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16
32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16
33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16
34 H 0.09 1.67 7.70 -2.39 -0.02 1.65 16
35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16
36 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16
37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16
38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16
39 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16
40 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16
41 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16
42 H 0.10 1.70 5.99 -2.39 -0.01 1.69 16
43 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16
44 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16
45 H 0.05 1.68 8.02 -2.39 -0.02 1.66 16
46 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16
47 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16
48 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16
49 H 0.01 0.54 7.65 -2.39 -0.02 0.52 16
50 H 0.01 0.69 7.22 -2.39 -0.02 0.67 16
51 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16
Total: -1.00 -71.17 404.28 5.39 -65.78
By element:
Atomic # 1 Polarization: 11.89 SS G_CDS: 0.91 Total: 12.80 kcal
Atomic # 6 Polarization: 4.24 SS G_CDS: 6.20 Total: 10.44 kcal
Atomic # 7 Polarization: -112.65 SS G_CDS: -4.54 Total: -117.19 kcal
Atomic # 8 Polarization: -19.96 SS G_CDS: 0.79 Total: -19.18 kcal
Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal
Total: -71.17 5.39 -65.78 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049532530.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.531 kcal
(2) G-P(sol) polarization free energy of solvation -71.166 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.366 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.388 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.777 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.754 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds