Wall clock time and date at job start Wed Apr 1 2020 04:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 N 1.30019 * 127.33875 * 2 1 4 4 O 1.20658 * 112.30236 * 179.97438 * 3 2 1 5 5 C 1.33491 * 113.15741 * 359.97438 * 4 3 2 6 6 C 1.50703 * 126.82842 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47245 * 300.03064 * 6 5 4 8 8 C 1.53005 * 109.46830 * 60.02592 * 6 5 4 9 9 C 1.37360 * 106.34226 * 0.24394 * 5 4 3 10 10 C 1.47398 * 128.56260 * 179.75511 * 9 5 4 11 11 O 1.21606 * 120.00358 * 90.00241 * 10 9 5 12 12 N 1.34777 * 120.00104 * 269.99772 * 10 9 5 13 13 C 1.45739 * 117.76353 * 0.02562 * 12 10 9 14 14 C 1.53044 * 109.56243 * 141.07829 * 13 12 10 15 15 C 1.52941 * 108.49496 * 53.79906 * 14 13 12 16 16 C 1.52932 * 109.79280 * 294.01320 * 15 14 13 17 17 H 1.08995 * 110.50413 * 292.89347 * 16 15 14 18 18 C 1.44184 * 117.76125 * 179.73614 * 12 10 9 19 19 H 1.09001 * 109.23307 * 333.41591 * 18 12 10 20 20 C 1.54572 * 111.47720 * 93.66690 * 18 12 10 21 21 C 1.54064 * 103.67137 * 153.28498 * 20 18 12 22 22 N 1.46887 * 107.70616 * 342.84750 * 21 20 18 23 23 C 1.36940 * 125.58130 * 177.04950 * 22 21 20 24 24 H 1.07992 * 120.00164 * 175.66135 * 23 22 21 25 25 C 1.38813 * 119.99798 * 355.65581 * 23 22 21 26 26 N 1.31624 * 120.00106 * 7.44470 * 25 23 22 27 27 Si 1.86797 * 119.99990 * 187.44365 * 25 23 22 28 28 H 1.48500 * 109.47188 * 94.98537 * 27 25 23 29 29 H 1.48502 * 109.47278 * 214.98914 * 27 25 23 30 30 H 1.48502 * 109.47190 * 334.98832 * 27 25 23 31 31 H 1.08999 * 109.47245 * 90.02881 * 1 2 3 32 32 H 1.08997 * 109.47726 * 210.02646 * 1 2 3 33 33 H 1.08996 * 109.47457 * 330.02873 * 1 2 3 34 34 H 1.08993 * 109.47352 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47029 * 300.00049 * 7 6 5 36 36 H 1.08999 * 109.47563 * 179.97438 * 7 6 5 37 37 H 1.09000 * 109.47511 * 59.99611 * 7 6 5 38 38 H 1.08993 * 109.47289 * 300.00205 * 8 6 5 39 39 H 1.09001 * 109.46780 * 60.00391 * 8 6 5 40 40 H 1.08999 * 109.46848 * 179.97438 * 8 6 5 41 41 H 1.09003 * 109.45154 * 261.11024 * 13 12 10 42 42 H 1.09004 * 109.45490 * 21.04765 * 13 12 10 43 43 H 1.08993 * 109.63419 * 173.50307 * 14 13 12 44 44 H 1.09006 * 109.63355 * 293.90040 * 14 13 12 45 45 H 1.08997 * 109.41644 * 54.10794 * 15 14 13 46 46 H 1.08997 * 109.42003 * 173.90911 * 15 14 13 47 47 H 1.08999 * 110.62520 * 34.73823 * 20 18 12 48 48 H 1.08998 * 110.71311 * 271.87966 * 20 18 12 49 49 H 1.09000 * 109.81083 * 223.29867 * 21 20 18 50 50 H 1.08993 * 109.80943 * 102.39642 * 21 20 18 51 51 H 0.96992 * 119.99651 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6494 -0.6008 0.0015 6 6 4.9711 -1.3247 0.0018 7 6 5.7650 -0.9375 -1.2475 8 6 5.7648 -0.9366 1.2509 9 6 2.3991 -1.1696 -0.0040 10 6 2.0400 -2.5992 -0.0104 11 8 1.8890 -3.1930 1.0400 12 7 1.8790 -3.2484 -1.1805 13 6 2.0721 -2.4899 -2.4099 14 6 2.7889 -3.3623 -3.4430 15 6 2.0045 -4.6651 -3.6057 16 6 2.0622 -5.4701 -2.3067 17 1 3.0777 -5.8181 -2.1180 18 6 1.5336 -4.6473 -1.1304 19 1 1.9029 -5.0752 -0.1984 20 6 0.0036 -4.8554 -1.2017 21 6 -0.1445 -6.2607 -1.8155 22 7 1.1384 -6.6140 -2.4375 23 6 1.4294 -7.8087 -3.0404 24 1 2.3809 -7.9479 -3.5318 25 6 0.5013 -8.8407 -3.0198 26 7 -0.7104 -8.6270 -2.5521 27 14 0.9719 -10.5329 -3.6557 28 1 1.4144 -11.3827 -2.5211 29 1 -0.2028 -11.1586 -4.3142 30 1 2.0785 -10.4026 -4.6374 31 1 -0.3634 -0.0005 -1.0276 32 1 -0.3634 -0.8897 0.5142 33 1 -0.3634 0.8902 0.5134 34 1 4.7962 -2.4005 0.0022 35 1 5.1995 -1.2139 -2.1374 36 1 6.7212 -1.4607 -1.2471 37 1 5.9399 0.1384 -1.2479 38 1 5.9397 0.1392 1.2506 39 1 5.1993 -1.2125 2.1410 40 1 6.7207 -1.4605 1.2514 41 1 1.1029 -2.1832 -2.8033 42 1 2.6747 -1.6060 -2.2003 43 1 2.8316 -2.8388 -4.3980 44 1 3.8001 -3.5807 -3.0996 45 1 0.9659 -4.4354 -3.8438 46 1 2.4396 -5.2515 -4.4150 47 1 -0.4562 -4.1059 -1.8458 48 1 -0.4366 -4.8245 -0.2051 49 1 -0.9312 -6.2533 -2.5700 50 1 -0.3873 -6.9812 -1.0345 51 1 -1.3589 -9.3481 -2.5381 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049532530.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:38 Heat of formation + Delta-G solvation = 27.753668 kcal Electronic energy + Delta-G solvation = -32805.512298 eV Core-core repulsion = 28707.869008 eV Total energy + Delta-G solvation = -4097.643291 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -45.98706 -41.82112 -39.49002 -37.11775 -36.88469 -35.64756 -34.20214 -33.96212 -32.09063 -30.84131 -30.00230 -29.75481 -28.07588 -26.92888 -26.13337 -25.01545 -23.90676 -23.34273 -22.20129 -21.68354 -20.45764 -19.57673 -19.02682 -18.82929 -18.54148 -17.73120 -17.01779 -16.78966 -16.67002 -16.05074 -15.84149 -15.50403 -15.23762 -15.03734 -14.83749 -14.50154 -14.36946 -14.23320 -14.12996 -14.09284 -13.84557 -13.74909 -13.61441 -13.13471 -13.03999 -12.81983 -12.70060 -12.56734 -12.39794 -12.33603 -12.32286 -12.23301 -12.03870 -11.96617 -11.84247 -11.69758 -11.59708 -11.30485 -11.19600 -10.91722 -10.67122 -10.41823 -9.75620 -8.90463 -7.84869 -5.19727 0.23158 0.80433 1.18331 1.46791 1.49267 1.57250 1.63335 2.02473 2.50408 2.98116 3.12149 3.33176 3.41210 3.57042 3.72019 3.81902 3.85966 3.94875 3.99855 4.03315 4.06212 4.11463 4.16217 4.31303 4.41435 4.51482 4.55556 4.56055 4.58843 4.63460 4.68827 4.73010 4.79595 4.80860 4.89042 4.93602 4.95236 5.02713 5.05835 5.09511 5.16928 5.29409 5.31489 5.36602 5.42434 5.54961 5.57970 5.62410 5.73577 6.17773 6.19445 6.92022 7.09424 7.14438 7.76424 8.40629 9.25804 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017404 B = 0.003113 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.443072 B = 8992.551027 C = 9600.668083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.054 3.946 3 N -0.369 5.369 4 O 0.102 5.898 5 C 0.041 3.959 6 C -0.019 4.019 7 C -0.145 4.145 8 C -0.147 4.147 9 C -0.262 4.262 10 C 0.595 3.405 11 O -0.567 6.567 12 N -0.568 5.568 13 C 0.108 3.892 14 C -0.118 4.118 15 C -0.121 4.121 16 C 0.159 3.841 17 H 0.055 0.945 18 C 0.153 3.847 19 H 0.070 0.930 20 C -0.135 4.135 21 C 0.191 3.809 22 N -0.615 5.615 23 C -0.235 4.235 24 H 0.087 0.913 25 C -0.064 4.064 26 N -0.950 5.950 27 Si 0.975 3.025 28 H -0.291 1.291 29 H -0.297 1.297 30 H -0.264 1.264 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.046 0.954 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.077 0.923 45 H 0.048 0.952 46 H 0.055 0.945 47 H 0.074 0.926 48 H 0.062 0.938 49 H 0.010 0.990 50 H 0.012 0.988 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.713 21.197 0.992 24.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 N -0.076 5.076 4 O 0.041 5.959 5 C -0.023 4.023 6 C -0.039 4.039 7 C -0.203 4.203 8 C -0.204 4.204 9 C -0.269 4.269 10 C 0.382 3.618 11 O -0.446 6.446 12 N -0.297 5.297 13 C -0.013 4.013 14 C -0.157 4.157 15 C -0.161 4.161 16 C 0.052 3.948 17 H 0.073 0.927 18 C 0.048 3.952 19 H 0.088 0.912 20 C -0.175 4.175 21 C 0.066 3.934 22 N -0.339 5.339 23 C -0.364 4.364 24 H 0.104 0.896 25 C -0.257 4.257 26 N -0.599 5.599 27 Si 0.803 3.197 28 H -0.218 1.218 29 H -0.224 1.224 30 H -0.189 1.189 31 H 0.121 0.879 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.083 0.917 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.114 0.886 43 H 0.122 0.878 44 H 0.096 0.904 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.093 0.907 48 H 0.081 0.919 49 H 0.028 0.972 50 H 0.030 0.970 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 11.346 21.977 1.446 24.775 hybrid contribution -0.767 -2.313 0.016 2.437 sum 10.579 19.664 1.462 22.377 Atomic orbital electron populations 1.20337 0.83827 1.04521 1.05027 1.25055 0.99507 0.85979 1.00301 1.73615 0.89428 1.23448 1.21139 1.84490 1.21128 1.22489 1.67746 1.25021 0.97161 0.83380 0.96733 1.20091 0.86267 0.97765 0.99777 1.21906 1.00514 1.03281 0.94560 1.21887 1.00498 1.03297 0.94757 1.21692 0.93963 0.94193 1.17097 1.17311 0.76292 0.84736 0.83463 1.90805 1.52198 1.68607 1.32948 1.46967 1.67010 1.09087 1.06662 1.21726 1.01673 0.94385 0.83514 1.21795 0.99212 0.94967 0.99692 1.21924 1.00012 0.96288 0.97859 1.21015 0.93342 0.87296 0.93130 0.92711 1.20741 0.94965 0.80261 0.99241 0.91220 1.22894 0.95974 0.97962 1.00623 1.20720 0.87748 0.90696 0.94252 1.44732 1.10036 1.12468 1.66686 1.19395 1.00788 0.88573 1.27610 0.89561 1.25631 0.96022 1.01712 1.02306 1.70197 1.04506 1.31773 1.53389 0.85109 0.77015 0.79926 0.77602 1.21818 1.22392 1.18861 0.87892 0.90589 0.88601 0.89068 0.91733 0.89278 0.90800 0.90686 0.93515 0.89061 0.90853 0.88641 0.87785 0.90414 0.93344 0.92578 0.90694 0.91879 0.97212 0.96979 0.94481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.49 71.23 0.75 -0.72 16 2 C 0.05 1.24 7.59 45.15 0.34 1.58 16 3 N -0.37 -8.61 12.01 -44.77 -0.54 -9.14 16 4 O 0.10 2.14 11.06 77.00 0.85 2.99 16 5 C 0.04 0.84 5.64 25.48 0.14 0.98 16 6 C -0.02 -0.30 3.33 -11.54 -0.04 -0.34 16 7 C -0.15 -1.48 9.17 71.98 0.66 -0.82 16 8 C -0.15 -1.92 9.18 71.98 0.66 -1.26 16 9 C -0.26 -6.51 4.18 -18.74 -0.08 -6.58 16 10 C 0.59 18.15 7.07 86.66 0.61 18.77 16 11 O -0.57 -22.11 16.38 -4.05 -0.07 -22.17 16 12 N -0.57 -16.27 2.79 -805.88 -2.25 -18.52 16 13 C 0.11 2.32 6.11 86.54 0.53 2.84 16 14 C -0.12 -2.47 6.10 30.59 0.19 -2.29 16 15 C -0.12 -3.82 5.31 30.55 0.16 -3.66 16 16 C 0.16 6.16 3.27 44.74 0.15 6.31 16 17 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 18 C 0.15 5.58 2.76 45.95 0.13 5.71 16 19 H 0.07 2.90 7.08 -2.39 -0.02 2.89 16 20 C -0.14 -5.31 6.46 31.49 0.20 -5.11 16 21 C 0.19 9.59 5.40 86.67 0.47 10.06 16 22 N -0.61 -30.68 2.93 -672.53 -1.97 -32.66 16 23 C -0.23 -12.78 10.26 84.03 0.86 -11.92 16 24 H 0.09 4.44 7.84 -2.91 -0.02 4.42 16 25 C -0.06 -3.58 5.47 84.86 0.46 -3.11 16 26 N -0.95 -57.10 10.34 21.65 0.22 -56.87 16 27 Si 0.97 45.32 29.56 68.60 2.03 47.35 16 28 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 29 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 30 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 31 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.09 1.67 7.70 -2.39 -0.02 1.65 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 40 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 42 H 0.10 1.70 5.99 -2.39 -0.01 1.69 16 43 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 45 H 0.05 1.68 8.02 -2.39 -0.02 1.66 16 46 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 48 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 49 H 0.01 0.54 7.65 -2.39 -0.02 0.52 16 50 H 0.01 0.69 7.22 -2.39 -0.02 0.67 16 51 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -71.17 404.28 5.39 -65.78 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.91 Total: 12.80 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: 6.20 Total: 10.44 kcal Atomic # 7 Polarization: -112.65 SS G_CDS: -4.54 Total: -117.19 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: 0.79 Total: -19.18 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -71.17 5.39 -65.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049532530.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.531 kcal (2) G-P(sol) polarization free energy of solvation -71.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds