Wall clock time and date at job start Wed Apr 1 2020 04:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30015 * 127.33732 * 2 1 4 4 O 1.20651 * 112.30183 * 180.27798 * 3 2 1 5 5 C 1.33491 * 113.15838 * 359.73051 * 4 3 2 6 6 C 1.50701 * 126.83341 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47205 * 300.00860 * 6 5 4 8 8 C 1.53003 * 109.46602 * 60.00028 * 6 5 4 9 9 C 1.37363 * 106.34071 * 0.02562 * 5 4 3 10 10 C 1.47397 * 128.56223 * 179.97438 * 9 5 4 11 11 O 1.21610 * 120.00006 * 90.00452 * 10 9 5 12 12 N 1.34781 * 120.00010 * 269.99349 * 10 9 5 13 13 C 1.47848 * 122.22494 * 0.02562 * 12 10 9 14 14 C 1.52716 * 111.06597 * 232.49729 * 13 12 10 15 15 C 1.53872 * 111.52340 * 311.47781 * 14 13 12 16 16 C 1.51081 * 107.40197 * 56.88020 * 15 14 13 17 17 H 1.09007 * 108.73553 * 51.49700 * 16 15 14 18 18 C 1.45719 * 122.22627 * 180.02562 * 12 10 9 19 19 H 1.09006 * 111.07211 * 240.50741 * 18 12 10 20 20 C 1.53428 * 116.37533 * 9.01356 * 18 12 10 21 21 C 1.55468 * 101.67607 * 152.71226 * 20 18 12 22 22 N 1.45434 * 120.13892 * 175.81802 * 16 15 14 23 23 C 1.36934 * 126.05944 * 331.09842 * 22 16 15 24 24 H 1.08002 * 120.00335 * 359.05379 * 23 22 16 25 25 C 1.38820 * 119.99914 * 179.04712 * 23 22 16 26 26 N 1.31619 * 119.99713 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99877 * 180.02562 * 25 23 22 28 28 H 1.48501 * 109.47153 * 60.00050 * 27 25 23 29 29 H 1.48504 * 109.46814 * 180.02562 * 27 25 23 30 30 H 1.48502 * 109.46920 * 299.99840 * 27 25 23 31 31 H 1.08994 * 109.47021 * 270.14615 * 1 2 3 32 32 H 1.09006 * 109.46964 * 30.14442 * 1 2 3 33 33 H 1.08995 * 109.46986 * 150.14470 * 1 2 3 34 34 H 1.08994 * 109.47358 * 180.02562 * 6 5 4 35 35 H 1.08997 * 109.47196 * 179.97438 * 7 6 5 36 36 H 1.09000 * 109.46540 * 299.99535 * 7 6 5 37 37 H 1.09000 * 109.47008 * 59.99367 * 7 6 5 38 38 H 1.09002 * 109.47329 * 60.00522 * 8 6 5 39 39 H 1.09004 * 109.47161 * 180.02562 * 8 6 5 40 40 H 1.08994 * 109.47466 * 300.00182 * 8 6 5 41 41 H 1.08999 * 109.16119 * 112.09305 * 13 12 10 42 42 H 1.09001 * 109.16263 * 352.90758 * 13 12 10 43 43 H 1.08999 * 109.07278 * 190.94794 * 14 13 12 44 44 H 1.08999 * 109.01085 * 71.96049 * 14 13 12 45 45 H 1.09002 * 109.88435 * 176.37909 * 15 14 13 46 46 H 1.08996 * 109.88051 * 297.38553 * 15 14 13 47 47 H 1.08993 * 110.99079 * 270.81196 * 20 18 12 48 48 H 1.09002 * 110.98294 * 34.61892 * 20 18 12 49 49 H 1.09008 * 109.95778 * 96.78326 * 21 20 18 50 50 H 1.08992 * 109.96673 * 217.98865 * 21 20 18 51 51 H 0.97008 * 119.99383 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0054 5 6 3.6494 -0.6008 -0.0043 6 6 4.9712 -1.3247 -0.0104 7 6 5.7582 -0.9390 -1.2645 8 6 5.7717 -0.9350 1.2339 9 6 2.3991 -1.1696 0.0024 10 6 2.0401 -2.5992 0.0058 11 8 1.8970 -3.1877 1.0603 12 7 1.8702 -3.2541 -1.1599 13 6 2.0321 -2.5874 -2.4696 14 6 0.8067 -2.8090 -3.3536 15 6 0.3970 -4.2918 -3.3893 16 6 0.1539 -4.7279 -1.9634 17 1 -0.5312 -4.0222 -1.4934 18 6 1.5147 -4.6662 -1.2132 19 1 2.2801 -5.2438 -1.7318 20 6 1.1331 -5.3238 0.1194 21 6 0.1853 -6.4626 -0.3516 22 7 -0.3383 -6.0674 -1.6833 23 6 -1.1247 -6.8261 -2.5085 24 1 -1.4469 -6.4311 -3.4607 25 6 -1.5076 -8.1031 -2.1214 26 7 -1.1152 -8.5842 -0.9609 27 14 -2.5797 -9.1383 -3.2476 28 1 -1.8800 -9.3500 -4.5402 29 1 -2.8463 -10.4516 -2.6075 30 1 -3.8656 -8.4362 -3.4899 31 1 -0.3633 0.0026 1.0276 32 1 -0.3633 0.8887 -0.5161 33 1 -0.3633 -0.8912 -0.5116 34 1 4.7962 -2.4005 -0.0081 35 1 6.7143 -1.4623 -1.2687 36 1 5.1878 -1.2166 -2.1509 37 1 5.9330 0.1368 -1.2672 38 1 5.2112 -1.2097 2.1275 39 1 6.7280 -1.4582 1.2294 40 1 5.9467 0.1409 1.2312 41 1 2.9120 -2.9914 -2.9703 42 1 2.1708 -1.5179 -2.3120 43 1 1.0338 -2.4778 -4.3669 44 1 -0.0234 -2.2196 -2.9641 45 1 -0.5153 -4.4104 -3.9739 46 1 1.1980 -4.8871 -3.8276 47 1 2.0120 -5.7296 0.6203 48 1 0.6075 -4.6205 0.7653 49 1 0.7389 -7.3982 -0.4317 50 1 -0.6382 -6.5768 0.3532 51 1 -1.3825 -9.4767 -0.6906 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049532532.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:41 Heat of formation + Delta-G solvation = 34.590380 kcal Electronic energy + Delta-G solvation = -32846.715572 eV Core-core repulsion = 28749.368743 eV Total energy + Delta-G solvation = -4097.346829 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.98037 -41.70513 -39.28943 -37.09240 -36.92825 -35.63943 -34.24889 -33.88103 -32.07027 -30.77029 -29.81588 -29.73797 -28.07633 -26.92682 -26.30427 -24.77212 -23.90224 -22.90386 -22.53034 -21.53827 -20.77997 -20.10708 -18.87481 -18.64807 -18.13881 -17.25025 -17.13456 -16.79477 -16.65285 -16.14848 -15.69720 -15.53440 -15.37478 -14.96893 -14.91233 -14.43474 -14.36580 -14.25795 -14.11725 -14.06586 -13.88933 -13.79891 -13.45089 -13.17956 -13.04346 -12.91492 -12.68071 -12.56856 -12.37488 -12.30560 -12.23115 -12.17816 -12.03597 -11.83468 -11.81871 -11.71513 -11.59452 -11.49310 -11.00354 -10.80065 -10.63831 -10.38531 -9.66643 -8.90278 -7.82685 -5.19377 0.24707 0.79792 1.25552 1.47027 1.50310 1.56419 1.65696 2.03617 2.51574 2.97076 3.13022 3.32472 3.35991 3.51316 3.73242 3.87447 3.94197 3.95290 4.02679 4.05658 4.07296 4.16650 4.21705 4.29520 4.40597 4.50381 4.54738 4.55112 4.57843 4.60788 4.67484 4.72927 4.79175 4.88746 4.89125 4.94163 4.98037 5.04190 5.07665 5.09018 5.12212 5.27054 5.29470 5.35684 5.38417 5.49642 5.57824 5.59622 5.72633 6.18592 6.32368 6.99624 7.06817 7.14678 7.76786 8.45484 9.28705 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.018171 B = 0.003076 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.521828 B = 9099.903094 C = 9359.124612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.051 3.949 3 N -0.369 5.369 4 O 0.101 5.899 5 C 0.041 3.959 6 C -0.018 4.018 7 C -0.144 4.144 8 C -0.147 4.147 9 C -0.261 4.261 10 C 0.602 3.398 11 O -0.558 6.558 12 N -0.583 5.583 13 C 0.110 3.890 14 C -0.118 4.118 15 C -0.109 4.109 16 C 0.154 3.846 17 H -0.001 1.001 18 C 0.133 3.867 19 H 0.089 0.911 20 C -0.116 4.116 21 C 0.185 3.815 22 N -0.612 5.612 23 C -0.234 4.234 24 H 0.089 0.911 25 C -0.068 4.068 26 N -0.954 5.954 27 Si 0.977 3.023 28 H -0.272 1.272 29 H -0.298 1.298 30 H -0.279 1.279 31 H 0.087 0.913 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.045 0.955 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.112 0.888 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.027 0.973 50 H 0.000 1.000 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.496 19.913 -3.786 24.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.111 4.111 3 N -0.076 5.076 4 O 0.041 5.959 5 C -0.023 4.023 6 C -0.037 4.037 7 C -0.201 4.201 8 C -0.205 4.205 9 C -0.269 4.269 10 C 0.389 3.611 11 O -0.437 6.437 12 N -0.314 5.314 13 C -0.011 4.011 14 C -0.157 4.157 15 C -0.148 4.148 16 C 0.046 3.954 17 H 0.016 0.984 18 C 0.028 3.972 19 H 0.107 0.893 20 C -0.154 4.154 21 C 0.060 3.940 22 N -0.337 5.337 23 C -0.363 4.363 24 H 0.107 0.893 25 C -0.260 4.260 26 N -0.603 5.603 27 Si 0.806 3.194 28 H -0.198 1.198 29 H -0.225 1.225 30 H -0.205 1.205 31 H 0.106 0.894 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.110 0.890 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.130 0.870 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.089 0.911 49 H 0.046 0.954 50 H 0.018 0.982 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.128 20.744 -3.231 25.305 hybrid contribution -1.267 -1.998 0.162 2.371 sum 12.861 18.746 -3.068 22.940 Atomic orbital electron populations 1.20300 0.84160 1.04774 1.04361 1.25014 0.99340 0.86220 1.00511 1.73605 0.89461 1.23433 1.21103 1.84480 1.21065 1.22617 1.67742 1.25037 0.97207 0.83301 0.96778 1.20083 0.86147 0.97807 0.99708 1.21893 1.00540 1.03221 0.94475 1.21888 1.00465 1.03240 0.94862 1.21801 0.93848 0.94359 1.16872 1.17097 0.76442 0.84386 0.83140 1.90812 1.51988 1.68494 1.32408 1.47959 1.67259 1.09771 1.06458 1.21973 0.99534 0.98155 0.81484 1.21864 0.97529 0.94836 1.01449 1.21384 1.01609 0.96592 0.95203 1.21005 0.91919 0.86459 0.96050 0.98356 1.22106 0.96852 0.80700 0.97525 0.89310 1.22733 0.99305 0.97341 0.96024 1.21430 0.93247 0.94001 0.85353 1.44465 1.57584 1.14209 1.17407 1.19384 1.22306 0.95482 0.99097 0.89307 1.25669 1.02714 0.98867 0.98792 1.70167 1.50698 1.17169 1.22275 0.85171 0.78714 0.77458 0.78102 1.19796 1.22481 1.20503 0.89441 0.87994 0.90337 0.88932 0.89225 0.91782 0.90937 0.93578 0.88984 0.90802 0.88784 0.89041 0.86979 0.92024 0.92223 0.91271 0.91363 0.91102 0.95442 0.98184 0.94502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 10.49 71.24 0.75 -0.88 16 2 C 0.05 1.25 7.58 45.16 0.34 1.59 16 3 N -0.37 -8.96 12.01 -44.78 -0.54 -9.50 16 4 O 0.10 2.20 11.06 77.01 0.85 3.06 16 5 C 0.04 0.85 6.06 25.48 0.15 1.00 16 6 C -0.02 -0.27 3.33 -11.54 -0.04 -0.31 16 7 C -0.14 -1.41 9.18 71.98 0.66 -0.75 16 8 C -0.15 -1.93 9.17 71.98 0.66 -1.27 16 9 C -0.26 -6.72 4.35 -18.75 -0.08 -6.80 16 10 C 0.60 18.86 7.18 86.65 0.62 19.49 16 11 O -0.56 -22.03 13.90 -4.06 -0.06 -22.09 16 12 N -0.58 -16.83 2.91 -795.00 -2.32 -19.14 16 13 C 0.11 2.21 6.31 86.03 0.54 2.76 16 14 C -0.12 -2.48 5.93 30.79 0.18 -2.30 16 15 C -0.11 -3.36 5.50 30.26 0.17 -3.19 16 16 C 0.15 6.18 2.60 45.43 0.12 6.30 16 17 H 0.00 -0.05 8.06 -2.38 -0.02 -0.06 16 18 C 0.13 4.81 3.29 46.15 0.15 4.96 16 19 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 20 C -0.12 -4.96 5.06 31.59 0.16 -4.80 16 21 C 0.18 9.69 5.48 86.85 0.48 10.16 16 22 N -0.61 -31.54 3.36 -669.37 -2.25 -33.79 16 23 C -0.23 -12.88 9.95 84.04 0.84 -12.04 16 24 H 0.09 4.57 7.36 -2.91 -0.02 4.55 16 25 C -0.07 -3.85 5.49 84.86 0.47 -3.39 16 26 N -0.95 -58.30 10.46 21.65 0.23 -58.07 16 27 Si 0.98 45.56 29.55 68.60 2.03 47.59 16 28 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 29 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 30 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.09 1.65 7.70 -2.39 -0.02 1.63 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.09 1.62 6.50 -2.39 -0.02 1.60 16 43 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.06 1.94 7.74 -2.39 -0.02 1.92 16 46 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 47 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 48 H 0.07 3.24 6.14 -2.39 -0.01 3.23 16 49 H 0.03 1.57 7.19 -2.38 -0.02 1.55 16 50 H 0.00 -0.01 7.81 -2.39 -0.02 -0.03 16 51 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 Total: -1.00 -73.10 400.45 5.03 -68.08 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.92 Total: 13.34 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 6.17 Total: 10.53 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -4.88 Total: -120.50 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: 0.80 Total: -19.03 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -73.10 5.03 -68.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049532532.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.667 kcal (2) G-P(sol) polarization free energy of solvation -73.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds