Wall clock time and date at job start Wed Apr 1 2020 04:43:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.30173 * 126.80049 * 2 1
4 4 O 1.20926 * 111.60372 * 180.24852 * 3 2 1
5 5 C 1.34042 * 111.56565 * 359.74176 * 4 3 2
6 6 C 1.50699 * 126.77356 * 179.97438 * 5 4 3
7 7 C 1.35453 * 106.44797 * 0.02562 * 5 4 3
8 8 C 1.50694 * 128.00721 * 179.97438 * 7 5 4
9 9 H 1.08999 * 109.47203 * 2.55154 * 8 7 5
10 10 C 1.53000 * 109.47354 * 242.54940 * 8 7 5
11 11 C 1.50703 * 109.46973 * 122.54716 * 8 7 5
12 12 O 1.21279 * 120.00171 * 0.02562 * 11 8 7
13 13 N 1.34782 * 119.99763 * 179.97438 * 11 8 7
14 14 C 1.45728 * 117.76063 * 0.02562 * 13 11 8
15 15 C 1.53061 * 109.55458 * 141.08050 * 14 13 11
16 16 C 1.52943 * 108.49350 * 53.80308 * 15 14 13
17 17 C 1.52929 * 109.78969 * 294.00629 * 16 15 14
18 18 H 1.09003 * 110.51415 * 292.90051 * 17 16 15
19 19 C 1.44189 * 117.75783 * 179.73686 * 13 11 8
20 20 H 1.09004 * 109.23130 * 333.41548 * 19 13 11
21 21 C 1.54572 * 111.47880 * 93.66430 * 19 13 11
22 22 C 1.54058 * 103.67071 * 153.28272 * 21 19 13
23 23 N 1.46883 * 107.70973 * 342.84696 * 22 21 19
24 24 C 1.36935 * 125.58207 * 177.04221 * 23 22 21
25 25 H 1.08001 * 119.99596 * 175.74483 * 24 23 22
26 26 C 1.38811 * 120.00261 * 355.74709 * 24 23 22
27 27 N 1.31619 * 119.99945 * 7.30424 * 26 24 23
28 28 Si 1.86798 * 120.00228 * 187.29410 * 26 24 23
29 29 H 1.48508 * 109.46628 * 94.99114 * 28 26 24
30 30 H 1.48493 * 109.47562 * 214.98796 * 28 26 24
31 31 H 1.48500 * 109.47108 * 334.99734 * 28 26 24
32 32 H 1.08997 * 109.47369 * 275.35486 * 1 2 3
33 33 H 1.09000 * 109.47240 * 35.36196 * 1 2 3
34 34 H 1.09003 * 109.46794 * 155.35973 * 1 2 3
35 35 H 1.08998 * 109.47816 * 270.00145 * 6 5 4
36 36 H 1.08998 * 109.46929 * 30.00989 * 6 5 4
37 37 H 1.09006 * 109.46780 * 150.00374 * 6 5 4
38 38 H 1.09000 * 109.47275 * 172.42225 * 10 8 7
39 39 H 1.09000 * 109.46789 * 52.41807 * 10 8 7
40 40 H 1.09000 * 109.46808 * 292.41996 * 10 8 7
41 41 H 1.09002 * 109.45746 * 261.10589 * 14 13 11
42 42 H 1.08993 * 109.46078 * 21.07668 * 14 13 11
43 43 H 1.08996 * 109.63045 * 173.50241 * 15 14 13
44 44 H 1.08995 * 109.63448 * 294.09427 * 15 14 13
45 45 H 1.08994 * 109.42111 * 54.10308 * 16 15 14
46 46 H 1.09001 * 109.41351 * 173.91460 * 16 15 14
47 47 H 1.09004 * 110.62261 * 34.73800 * 21 19 13
48 48 H 1.08998 * 110.58909 * 271.82190 * 21 19 13
49 49 H 1.09000 * 109.81287 * 223.30134 * 22 21 19
50 50 H 1.08998 * 109.86365 * 102.42892 * 22 21 19
51 51 H 0.96993 * 120.00159 * 179.97438 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2868 1.0423 0.0000
4 8 3.4538 0.7253 -0.0049
5 6 3.6025 -0.6068 -0.0032
6 6 4.9022 -1.3695 -0.0085
7 6 2.3540 -1.1321 0.0029
8 6 1.9591 -2.5864 0.0065
9 1 2.8549 -3.2060 0.0491
10 6 1.1781 -2.9060 -1.2697
11 6 1.0951 -2.8693 1.2084
12 8 0.8260 -1.9777 1.9852
13 7 0.6205 -4.1130 1.4194
14 6 0.9736 -5.1469 0.4550
15 6 1.2471 -6.4613 1.1901
16 6 0.0388 -6.7857 2.0698
17 6 -0.0918 -5.7385 3.1767
18 1 0.7440 -5.8119 3.8726
19 6 -0.1965 -4.3309 2.5873
20 1 0.0685 -3.6008 3.3521
21 6 -1.7005 -4.1862 2.2609
22 6 -2.3888 -5.0749 3.3144
23 7 -1.3704 -5.9717 3.8766
24 6 -1.5740 -6.8760 4.8846
25 1 -0.7766 -7.5405 5.1830
26 6 -2.8051 -6.9386 5.5227
27 7 -3.8190 -6.2334 5.0675
28 14 -3.0232 -8.0239 7.0274
29 1 -2.8258 -7.2126 8.2556
30 1 -4.3922 -8.5990 7.0289
31 1 -2.0246 -9.1225 6.9942
32 1 -0.3634 0.0959 1.0231
33 1 -0.3634 0.8381 -0.5947
34 1 -0.3633 -0.9341 -0.4285
35 1 5.2104 -1.5553 -1.0373
36 1 5.6685 -0.7849 0.5005
37 1 4.7677 -2.3201 0.5077
38 1 1.0092 -3.9810 -1.3327
39 1 1.7496 -2.5765 -2.1375
40 1 0.2192 -2.3882 -1.2481
41 1 0.1499 -5.2870 -0.2450
42 1 1.8668 -4.8442 -0.0913
43 1 1.3980 -7.2615 0.4656
44 1 2.1354 -6.3548 1.8126
45 1 -0.8646 -6.7830 1.4601
46 1 0.1702 -7.7710 2.5169
47 1 -1.9119 -4.5503 1.2555
48 1 -2.0180 -3.1490 2.3683
49 1 -3.1782 -5.6613 2.8442
50 1 -2.8108 -4.4537 4.1044
51 1 -4.6793 -6.2774 5.5132
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001049781320.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:43:45
Heat of formation + Delta-G solvation = 56.902375 kcal
Electronic energy + Delta-G solvation = -32672.749922 eV
Core-core repulsion = 28576.370614 eV
Total energy + Delta-G solvation = -4096.379308 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-44.95761 -40.72559 -38.22664 -35.81617 -35.48853 -33.83976 -32.73622 -32.55839
-31.61630 -29.00675 -28.74426 -28.38946 -27.72126 -25.56299 -24.46413 -24.13470
-22.32185 -21.94600 -20.42245 -20.20673 -19.66532 -18.22747 -17.71477 -17.22471
-16.93096 -16.86155 -15.65519 -15.35152 -14.79990 -14.71693 -14.31829 -14.26102
-13.92076 -13.89944 -13.60940 -13.57337 -13.28636 -13.20262 -12.91543 -12.82501
-12.67816 -12.45203 -12.43080 -12.04787 -11.97541 -11.89668 -11.76995 -11.40730
-11.02623 -10.97667 -10.87824 -10.76599 -10.67319 -10.49531 -10.10996 -10.07644
-9.83418 -9.69763 -9.60284 -9.52751 -9.17456 -8.59215 -8.33374 -6.88583
-5.74856 -3.08147 1.37755 2.17818 2.69935 2.99893 3.16803 3.38843
3.44094 3.45949 4.11053 4.31199 4.37000 4.46179 4.61660 4.65727
4.83916 4.93428 4.99668 5.04619 5.10176 5.14598 5.22244 5.32751
5.36142 5.40097 5.47079 5.50738 5.52394 5.57415 5.58250 5.63592
5.66813 5.76681 5.83288 5.86516 5.90407 5.95413 6.04932 6.19749
6.22655 6.26646 6.35298 6.54787 6.55118 6.71912 6.95582 7.06664
7.51002 7.54417 7.63133 7.81026 8.22152 8.27410 8.32566 9.18336
9.78569 10.43586 11.36463
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.019371 B = 0.002840 C = 0.002704
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1445.089597 B = 9855.978057 C =10350.958970
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.074 4.074
2 C 0.056 3.944
3 N -0.374 5.374
4 O 0.093 5.907
5 C -0.032 4.032
6 C -0.073 4.073
7 C -0.177 4.177
8 C -0.030 4.030
9 H 0.106 0.894
10 C -0.157 4.157
11 C 0.508 3.492
12 O -0.527 6.527
13 N -0.584 5.584
14 C 0.105 3.895
15 C -0.134 4.134
16 C -0.131 4.131
17 C 0.162 3.838
18 H 0.054 0.946
19 C 0.137 3.863
20 H 0.091 0.909
21 C -0.149 4.149
22 C 0.178 3.822
23 N -0.595 5.595
24 C -0.229 4.229
25 H 0.078 0.922
26 C -0.005 4.005
27 N -0.917 5.917
28 Si 0.910 3.090
29 H -0.289 1.289
30 H -0.291 1.291
31 H -0.281 1.281
32 H 0.088 0.912
33 H 0.070 0.930
34 H 0.077 0.923
35 H 0.087 0.913
36 H 0.084 0.916
37 H 0.089 0.911
38 H 0.081 0.919
39 H 0.067 0.933
40 H 0.066 0.934
41 H 0.066 0.934
42 H 0.081 0.919
43 H 0.071 0.929
44 H 0.064 0.936
45 H 0.062 0.938
46 H 0.062 0.938
47 H 0.055 0.945
48 H 0.061 0.939
49 H 0.040 0.960
50 H 0.051 0.949
51 H 0.253 0.747
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.142 5.448 -16.422 22.993
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.103 4.103
3 N -0.081 5.081
4 O 0.030 5.970
5 C -0.096 4.096
6 C -0.131 4.131
7 C -0.181 4.181
8 C -0.052 4.052
9 H 0.124 0.876
10 C -0.214 4.214
11 C 0.295 3.705
12 O -0.403 6.403
13 N -0.316 5.316
14 C -0.018 4.018
15 C -0.172 4.172
16 C -0.171 4.171
17 C 0.053 3.947
18 H 0.072 0.928
19 C 0.033 3.967
20 H 0.109 0.891
21 C -0.188 4.188
22 C 0.053 3.947
23 N -0.320 5.320
24 C -0.357 4.357
25 H 0.096 0.904
26 C -0.201 4.201
27 N -0.564 5.564
28 Si 0.740 3.260
29 H -0.216 1.216
30 H -0.218 1.218
31 H -0.206 1.206
32 H 0.107 0.893
33 H 0.088 0.912
34 H 0.095 0.905
35 H 0.106 0.894
36 H 0.102 0.898
37 H 0.108 0.892
38 H 0.099 0.901
39 H 0.086 0.914
40 H 0.085 0.915
41 H 0.084 0.916
42 H 0.099 0.901
43 H 0.089 0.911
44 H 0.083 0.917
45 H 0.080 0.920
46 H 0.081 0.919
47 H 0.074 0.926
48 H 0.080 0.920
49 H 0.058 0.942
50 H 0.070 0.930
51 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges 14.555 7.148 -15.818 22.653
hybrid contribution -0.351 -1.467 0.835 1.724
sum 14.204 5.681 -14.983 21.413
Atomic orbital electron populations
1.20234 0.86097 1.02788 1.04030 1.23268 0.98839 0.87935 1.00297
1.73805 0.89166 1.23857 1.21309 1.84785 1.21824 1.22102 1.68279
1.24129 0.97820 0.84212 1.03457 1.20329 0.90216 0.98639 1.03879
1.20274 0.91772 0.95923 1.10170 1.19533 0.99522 0.90974 0.95195
0.87617 1.22154 1.00713 1.03375 0.95160 1.20456 0.80681 0.82763
0.86625 1.90708 1.58515 1.44336 1.46716 1.47035 1.50480 1.08615
1.25482 1.21760 1.00120 0.88686 0.91245 1.21879 0.99965 0.95971
0.99419 1.22131 0.96415 1.00761 0.97827 1.20820 0.91011 0.90470
0.92394 0.92848 1.21128 0.90370 0.98887 0.86307 0.89065 1.23067
0.94936 1.00603 1.00232 1.21062 0.90304 0.90685 0.92635 1.44494
1.03643 1.43492 1.40336 1.19006 0.97534 1.11146 1.08052 0.90396
1.24815 0.95896 1.00011 0.99417 1.69982 1.01189 1.44458 1.40792
0.86134 0.77062 0.79599 0.83168 1.21593 1.21793 1.20638 0.89334
0.91162 0.90472 0.89437 0.89755 0.89250 0.90069 0.91353 0.91488
0.91601 0.90064 0.91072 0.91686 0.91962 0.91904 0.92635 0.92031
0.94232 0.93046 0.93708
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -0.93 9.18 36.01 0.33 -0.60 16
2 C 0.06 0.77 6.69 -82.10 -0.55 0.22 16
3 N -0.37 -5.53 12.07 33.42 0.40 -5.12 16
4 O 0.09 1.21 11.20 17.17 0.19 1.40 16
5 C -0.03 -0.35 7.49 -35.30 -0.26 -0.61 16
6 C -0.07 -0.44 10.18 36.01 0.37 -0.07 16
7 C -0.18 -2.13 4.50 -104.42 -0.47 -2.60 16
8 C -0.03 -0.31 2.16 -92.93 -0.20 -0.51 16
9 H 0.11 0.81 6.28 -51.93 -0.33 0.48 16
10 C -0.16 -1.26 8.52 37.16 0.32 -0.94 16
11 C 0.51 7.17 6.76 -10.98 -0.07 7.10 16
12 O -0.53 -9.53 13.50 5.56 0.08 -9.45 16
13 N -0.58 -8.16 2.79 -167.42 -0.47 -8.63 16
14 C 0.10 1.09 4.56 -4.43 -0.02 1.07 16
15 C -0.13 -1.53 6.10 -26.73 -0.16 -1.70 16
16 C -0.13 -2.15 5.31 -26.80 -0.14 -2.29 16
17 C 0.16 3.16 3.27 -67.37 -0.22 2.94 16
18 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16
19 C 0.14 2.47 2.76 -68.35 -0.19 2.29 16
20 H 0.09 1.88 7.08 -51.93 -0.37 1.51 16
21 C -0.15 -2.85 6.46 -25.35 -0.16 -3.02 16
22 C 0.18 4.28 5.40 -3.28 -0.02 4.26 16
23 N -0.60 -14.61 2.93 -163.93 -0.48 -15.09 16
24 C -0.23 -6.20 10.26 -15.06 -0.15 -6.35 16
25 H 0.08 2.04 7.84 -52.49 -0.41 1.62 16
26 C 0.00 -0.13 5.47 -17.43 -0.10 -0.23 16
27 N -0.92 -26.62 10.34 55.49 0.57 -26.05 16
28 Si 0.91 21.84 29.56 -169.99 -5.02 16.82 16
29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16
30 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
31 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
32 H 0.09 1.26 7.81 -51.93 -0.41 0.86 16
33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
34 H 0.08 0.89 5.66 -51.93 -0.29 0.59 16
35 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16
36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16
37 H 0.09 0.46 7.36 -51.93 -0.38 0.08 16
38 H 0.08 0.54 4.75 -51.93 -0.25 0.29 16
39 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16
40 H 0.07 0.61 5.81 -51.93 -0.30 0.31 16
41 H 0.07 0.65 7.50 -51.93 -0.39 0.26 16
42 H 0.08 0.59 4.93 -51.93 -0.26 0.34 16
43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
44 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16
45 H 0.06 1.10 8.02 -51.93 -0.42 0.68 16
46 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16
47 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
48 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16
49 H 0.04 1.04 7.65 -51.93 -0.40 0.64 16
50 H 0.05 1.40 7.22 -51.93 -0.37 1.02 16
51 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16
LS Contribution 386.41 15.07 5.82 5.82
Total: -1.00 -33.17 386.41 -8.55 -41.72
By element:
Atomic # 1 Polarization: 7.55 SS G_CDS: -7.93 Total: -0.38 kcal
Atomic # 6 Polarization: 0.67 SS G_CDS: -1.71 Total: -1.04 kcal
Atomic # 7 Polarization: -54.92 SS G_CDS: 0.03 Total: -54.89 kcal
Atomic # 8 Polarization: -8.32 SS G_CDS: 0.27 Total: -8.05 kcal
Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal
Total LS contribution 5.82 Total: 5.82 kcal
Total: -33.17 -8.55 -41.72 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049781320.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.621 kcal
(2) G-P(sol) polarization free energy of solvation -33.172 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.449 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.902 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds