Wall clock time and date at job start Wed Apr 1 2020 04:43:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.30173 * 126.80049 * 2 1
4 4 O 1.20926 * 111.60372 * 180.24852 * 3 2 1
5 5 C 1.34042 * 111.56565 * 359.74176 * 4 3 2
6 6 C 1.50699 * 126.77356 * 179.97438 * 5 4 3
7 7 C 1.35453 * 106.44797 * 0.02562 * 5 4 3
8 8 C 1.50694 * 128.00721 * 179.97438 * 7 5 4
9 9 H 1.08999 * 109.47203 * 2.55154 * 8 7 5
10 10 C 1.53000 * 109.47354 * 242.54940 * 8 7 5
11 11 C 1.50703 * 109.46973 * 122.54716 * 8 7 5
12 12 O 1.21279 * 120.00171 * 0.02562 * 11 8 7
13 13 N 1.34782 * 119.99763 * 179.97438 * 11 8 7
14 14 C 1.45728 * 117.76063 * 0.02562 * 13 11 8
15 15 C 1.53061 * 109.55458 * 141.08050 * 14 13 11
16 16 C 1.52943 * 108.49350 * 53.80308 * 15 14 13
17 17 C 1.52929 * 109.78969 * 294.00629 * 16 15 14
18 18 H 1.09003 * 110.51415 * 292.90051 * 17 16 15
19 19 C 1.44189 * 117.75783 * 179.73686 * 13 11 8
20 20 H 1.09004 * 109.23130 * 333.41548 * 19 13 11
21 21 C 1.54572 * 111.47880 * 93.66430 * 19 13 11
22 22 C 1.54058 * 103.67071 * 153.28272 * 21 19 13
23 23 N 1.46883 * 107.70973 * 342.84696 * 22 21 19
24 24 C 1.36935 * 125.58207 * 177.04221 * 23 22 21
25 25 H 1.08001 * 119.99596 * 175.74483 * 24 23 22
26 26 C 1.38811 * 120.00261 * 355.74709 * 24 23 22
27 27 N 1.31619 * 119.99945 * 7.30424 * 26 24 23
28 28 Si 1.86798 * 120.00228 * 187.29410 * 26 24 23
29 29 H 1.48508 * 109.46628 * 94.99114 * 28 26 24
30 30 H 1.48493 * 109.47562 * 214.98796 * 28 26 24
31 31 H 1.48500 * 109.47108 * 334.99734 * 28 26 24
32 32 H 1.08997 * 109.47369 * 275.35486 * 1 2 3
33 33 H 1.09000 * 109.47240 * 35.36196 * 1 2 3
34 34 H 1.09003 * 109.46794 * 155.35973 * 1 2 3
35 35 H 1.08998 * 109.47816 * 270.00145 * 6 5 4
36 36 H 1.08998 * 109.46929 * 30.00989 * 6 5 4
37 37 H 1.09006 * 109.46780 * 150.00374 * 6 5 4
38 38 H 1.09000 * 109.47275 * 172.42225 * 10 8 7
39 39 H 1.09000 * 109.46789 * 52.41807 * 10 8 7
40 40 H 1.09000 * 109.46808 * 292.41996 * 10 8 7
41 41 H 1.09002 * 109.45746 * 261.10589 * 14 13 11
42 42 H 1.08993 * 109.46078 * 21.07668 * 14 13 11
43 43 H 1.08996 * 109.63045 * 173.50241 * 15 14 13
44 44 H 1.08995 * 109.63448 * 294.09427 * 15 14 13
45 45 H 1.08994 * 109.42111 * 54.10308 * 16 15 14
46 46 H 1.09001 * 109.41351 * 173.91460 * 16 15 14
47 47 H 1.09004 * 110.62261 * 34.73800 * 21 19 13
48 48 H 1.08998 * 110.58909 * 271.82190 * 21 19 13
49 49 H 1.09000 * 109.81287 * 223.30134 * 22 21 19
50 50 H 1.08998 * 109.86365 * 102.42892 * 22 21 19
51 51 H 0.96993 * 120.00159 * 179.97438 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2868 1.0423 0.0000
4 8 3.4538 0.7253 -0.0049
5 6 3.6025 -0.6068 -0.0032
6 6 4.9022 -1.3695 -0.0085
7 6 2.3540 -1.1321 0.0029
8 6 1.9591 -2.5864 0.0065
9 1 2.8549 -3.2060 0.0491
10 6 1.1781 -2.9060 -1.2697
11 6 1.0951 -2.8693 1.2084
12 8 0.8260 -1.9777 1.9852
13 7 0.6205 -4.1130 1.4194
14 6 0.9736 -5.1469 0.4550
15 6 1.2471 -6.4613 1.1901
16 6 0.0388 -6.7857 2.0698
17 6 -0.0918 -5.7385 3.1767
18 1 0.7440 -5.8119 3.8726
19 6 -0.1965 -4.3309 2.5873
20 1 0.0685 -3.6008 3.3521
21 6 -1.7005 -4.1862 2.2609
22 6 -2.3888 -5.0749 3.3144
23 7 -1.3704 -5.9717 3.8766
24 6 -1.5740 -6.8760 4.8846
25 1 -0.7766 -7.5405 5.1830
26 6 -2.8051 -6.9386 5.5227
27 7 -3.8190 -6.2334 5.0675
28 14 -3.0232 -8.0239 7.0274
29 1 -2.8258 -7.2126 8.2556
30 1 -4.3922 -8.5990 7.0289
31 1 -2.0246 -9.1225 6.9942
32 1 -0.3634 0.0959 1.0231
33 1 -0.3634 0.8381 -0.5947
34 1 -0.3633 -0.9341 -0.4285
35 1 5.2104 -1.5553 -1.0373
36 1 5.6685 -0.7849 0.5005
37 1 4.7677 -2.3201 0.5077
38 1 1.0092 -3.9810 -1.3327
39 1 1.7496 -2.5765 -2.1375
40 1 0.2192 -2.3882 -1.2481
41 1 0.1499 -5.2870 -0.2450
42 1 1.8668 -4.8442 -0.0913
43 1 1.3980 -7.2615 0.4656
44 1 2.1354 -6.3548 1.8126
45 1 -0.8646 -6.7830 1.4601
46 1 0.1702 -7.7710 2.5169
47 1 -1.9119 -4.5503 1.2555
48 1 -2.0180 -3.1490 2.3683
49 1 -3.1782 -5.6613 2.8442
50 1 -2.8108 -4.4537 4.1044
51 1 -4.6793 -6.2774 5.5132
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049781320.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:43:44
Heat of formation + Delta-G solvation = 36.595057 kcal
Electronic energy + Delta-G solvation = -32673.630513 eV
Core-core repulsion = 28576.370614 eV
Total energy + Delta-G solvation = -4097.259899 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-45.89908 -41.91413 -39.62645 -36.95626 -36.69799 -34.77258 -34.24597 -33.88250
-32.72325 -30.75621 -29.84740 -29.71063 -28.39973 -26.72087 -26.21149 -25.16136
-23.52179 -23.08035 -22.06386 -21.25838 -20.82125 -19.51377 -18.82288 -18.67137
-18.26170 -17.81003 -16.81035 -16.79274 -16.36819 -16.06483 -15.70008 -15.21266
-15.03211 -14.99264 -14.93439 -14.41859 -14.27746 -14.16075 -13.89202 -13.83048
-13.79828 -13.70139 -13.51559 -13.26413 -13.17559 -13.04330 -12.80321 -12.77059
-12.64602 -12.51783 -12.30030 -12.04396 -12.02669 -11.89385 -11.72265 -11.55877
-11.49402 -11.16166 -10.80590 -10.68763 -10.63175 -10.03853 -9.55668 -8.90749
-7.86405 -5.21189 0.54399 1.21090 1.44428 1.47111 1.55306 1.63953
2.02210 2.28652 2.49268 3.22173 3.31930 3.41103 3.57302 3.59753
3.82233 3.84351 3.89169 4.02777 4.04318 4.14039 4.17382 4.23212
4.31178 4.37240 4.48184 4.56025 4.61051 4.62523 4.67593 4.71365
4.75041 4.79622 4.84266 4.87897 4.89504 4.95219 4.99611 5.00778
5.10363 5.12422 5.24367 5.29116 5.39355 5.42622 5.42954 5.57358
5.64028 5.72682 5.73578 6.18309 6.45560 7.08045 7.23349 7.37389
7.75764 8.40069 9.24125
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.019371 B = 0.002840 C = 0.002704
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1445.089597 B = 9855.978057 C =10350.958970
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 C 0.035 3.965
3 N -0.407 5.407
4 O 0.082 5.918
5 C -0.021 4.021
6 C -0.074 4.074
7 C -0.196 4.196
8 C -0.018 4.018
9 H 0.146 0.854
10 C -0.155 4.155
11 C 0.505 3.495
12 O -0.575 6.575
13 N -0.582 5.582
14 C 0.096 3.904
15 C -0.123 4.123
16 C -0.122 4.122
17 C 0.157 3.843
18 H 0.046 0.954
19 C 0.158 3.842
20 H 0.058 0.942
21 C -0.132 4.132
22 C 0.191 3.809
23 N -0.617 5.617
24 C -0.235 4.235
25 H 0.085 0.915
26 C -0.066 4.066
27 N -0.950 5.950
28 Si 0.975 3.025
29 H -0.292 1.292
30 H -0.295 1.295
31 H -0.264 1.264
32 H 0.062 0.938
33 H 0.079 0.921
34 H 0.087 0.913
35 H 0.117 0.883
36 H 0.093 0.907
37 H 0.105 0.895
38 H 0.103 0.897
39 H 0.088 0.912
40 H 0.050 0.950
41 H 0.081 0.919
42 H 0.129 0.871
43 H 0.107 0.893
44 H 0.072 0.928
45 H 0.048 0.952
46 H 0.048 0.952
47 H 0.077 0.923
48 H 0.057 0.943
49 H 0.008 0.992
50 H 0.007 0.993
51 H 0.246 0.754
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 18.661 3.653 -19.204 27.026
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.127 4.127
2 C -0.123 4.123
3 N -0.117 5.117
4 O 0.021 5.979
5 C -0.084 4.084
6 C -0.131 4.131
7 C -0.201 4.201
8 C -0.040 4.040
9 H 0.163 0.837
10 C -0.212 4.212
11 C 0.294 3.706
12 O -0.453 6.453
13 N -0.313 5.313
14 C -0.025 4.025
15 C -0.161 4.161
16 C -0.162 4.162
17 C 0.050 3.950
18 H 0.064 0.936
19 C 0.052 3.948
20 H 0.076 0.924
21 C -0.172 4.172
22 C 0.066 3.934
23 N -0.341 5.341
24 C -0.364 4.364
25 H 0.103 0.897
26 C -0.259 4.259
27 N -0.599 5.599
28 Si 0.804 3.196
29 H -0.219 1.219
30 H -0.222 1.222
31 H -0.188 1.188
32 H 0.081 0.919
33 H 0.098 0.902
34 H 0.106 0.894
35 H 0.135 0.865
36 H 0.112 0.888
37 H 0.124 0.876
38 H 0.121 0.879
39 H 0.107 0.893
40 H 0.069 0.931
41 H 0.099 0.901
42 H 0.146 0.854
43 H 0.125 0.875
44 H 0.090 0.910
45 H 0.067 0.933
46 H 0.067 0.933
47 H 0.095 0.905
48 H 0.075 0.925
49 H 0.026 0.974
50 H 0.025 0.975
51 H 0.055 0.945
Dipole moment (debyes) X Y Z Total
from point charges 18.141 5.330 -18.648 26.557
hybrid contribution -1.379 -0.874 1.719 2.371
sum 16.762 4.455 -16.930 24.237
Atomic orbital electron populations
1.20183 0.86143 1.03791 1.02626 1.23588 0.99293 0.88933 1.00522
1.73787 0.89972 1.24968 1.22975 1.84736 1.21134 1.23698 1.68339
1.25005 0.99397 0.83238 1.00804 1.20643 0.87831 0.98563 1.06094
1.20535 0.91856 0.96445 1.11225 1.19622 1.00211 0.90407 0.93742
0.83700 1.22208 0.99903 1.04619 0.94492 1.21276 0.80288 0.81835
0.87211 1.90708 1.60162 1.45791 1.48675 1.47040 1.49677 1.09950
1.24656 1.22204 1.02781 0.86996 0.90491 1.21856 0.97209 0.97705
0.99344 1.21920 0.98641 0.98507 0.97098 1.21045 0.88398 0.92483
0.93109 0.93597 1.20540 0.89965 0.96808 0.87516 0.92405 1.22850
0.95636 0.99156 0.99525 1.20706 0.90241 0.90224 0.92275 1.44755
1.05696 1.43069 1.40609 1.19390 0.97515 1.11204 1.08298 0.89748
1.25650 0.95879 1.02014 1.02322 1.70204 1.01317 1.46393 1.41998
0.85100 0.76911 0.78236 0.79362 1.21915 1.22229 1.18808 0.91898
0.90213 0.89436 0.86506 0.88848 0.87627 0.87859 0.89313 0.93112
0.90125 0.85379 0.87451 0.90969 0.93315 0.93305 0.90466 0.92458
0.97354 0.97510 0.94502
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.07 -1.81 9.18 71.24 0.65 -1.16 16
2 C 0.03 0.96 6.69 43.58 0.29 1.25 16
3 N -0.41 -12.09 12.07 -49.55 -0.60 -12.69 16
4 O 0.08 2.07 11.20 71.61 0.80 2.87 16
5 C -0.02 -0.39 7.49 25.04 0.19 -0.20 16
6 C -0.07 -0.54 10.18 71.24 0.73 0.19 16
7 C -0.20 -4.24 4.50 -19.74 -0.09 -4.33 16
8 C -0.02 -0.30 2.16 -12.29 -0.03 -0.32 16
9 H 0.15 1.22 6.28 -2.39 -0.02 1.20 16
10 C -0.16 -1.74 8.52 71.98 0.61 -1.13 16
11 C 0.50 13.17 6.76 87.66 0.59 13.76 16
12 O -0.57 -20.91 13.50 -3.03 -0.04 -20.95 16
13 N -0.58 -14.78 2.79 -801.98 -2.24 -17.02 16
14 C 0.10 1.49 4.56 86.55 0.40 1.88 16
15 C -0.12 -2.23 6.10 30.60 0.19 -2.04 16
16 C -0.12 -3.77 5.31 30.55 0.16 -3.61 16
17 C 0.16 6.14 3.27 44.74 0.15 6.28 16
18 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16
19 C 0.16 5.70 2.76 45.94 0.13 5.82 16
20 H 0.06 2.48 7.08 -2.39 -0.02 2.47 16
21 C -0.13 -5.21 6.46 31.49 0.20 -5.01 16
22 C 0.19 9.75 5.40 86.66 0.47 10.21 16
23 N -0.62 -31.40 2.93 -672.56 -1.97 -33.38 16
24 C -0.24 -13.07 10.26 84.03 0.86 -12.21 16
25 H 0.08 4.46 7.84 -2.91 -0.02 4.43 16
26 C -0.07 -3.76 5.47 84.86 0.46 -3.30 16
27 N -0.95 -58.04 10.34 21.65 0.22 -57.82 16
28 Si 0.98 46.06 29.56 68.60 2.03 48.09 16
29 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16
30 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16
31 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16
32 H 0.06 1.93 7.81 -2.39 -0.02 1.91 16
33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16
34 H 0.09 2.00 5.66 -2.39 -0.01 1.98 16
35 H 0.12 0.25 8.14 -2.39 -0.02 0.23 16
36 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16
37 H 0.11 0.48 7.36 -2.38 -0.02 0.46 16
38 H 0.10 0.70 4.75 -2.39 -0.01 0.69 16
39 H 0.09 0.71 8.13 -2.39 -0.02 0.69 16
40 H 0.05 0.76 5.81 -2.39 -0.01 0.75 16
41 H 0.08 1.12 7.50 -2.39 -0.02 1.10 16
42 H 0.13 0.89 4.93 -2.39 -0.01 0.88 16
43 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16
44 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16
45 H 0.05 1.64 8.02 -2.39 -0.02 1.62 16
46 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16
47 H 0.08 2.69 8.14 -2.39 -0.02 2.68 16
48 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16
49 H 0.01 0.47 7.65 -2.39 -0.02 0.45 16
50 H 0.01 0.39 7.22 -2.39 -0.02 0.37 16
51 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16
Total: -1.00 -80.81 386.41 5.11 -75.70
By element:
Atomic # 1 Polarization: 8.13 SS G_CDS: 0.94 Total: 9.08 kcal
Atomic # 6 Polarization: 0.14 SS G_CDS: 5.96 Total: 6.11 kcal
Atomic # 7 Polarization: -116.31 SS G_CDS: -4.59 Total: -120.90 kcal
Atomic # 8 Polarization: -18.84 SS G_CDS: 0.76 Total: -18.08 kcal
Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal
Total: -80.81 5.11 -75.70 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049781320.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 112.300 kcal
(2) G-P(sol) polarization free energy of solvation -80.814 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.486 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.705 kcal
(6) G-S(sol) free energy of system = (1) + (5) 36.595 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds