Wall clock time and date at job start Wed Apr 1 2020 04:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30178 * 126.79954 * 2 1 4 4 O 1.20918 * 111.60053 * 179.69176 * 3 2 1 5 5 C 1.34040 * 111.57198 * 0.45584 * 4 3 2 6 6 C 1.50696 * 126.78077 * 179.83211 * 5 4 3 7 7 C 1.35451 * 106.44352 * 359.56166 * 5 4 3 8 8 C 1.50696 * 128.00967 * 180.24251 * 7 5 4 9 9 H 1.09008 * 109.47374 * 1.11381 * 8 7 5 10 10 C 1.53001 * 109.47323 * 241.11965 * 8 7 5 11 11 C 1.50694 * 109.47504 * 121.11803 * 8 7 5 12 12 O 1.21287 * 119.99958 * 20.31865 * 11 8 7 13 13 N 1.34783 * 120.00262 * 200.32186 * 11 8 7 14 14 C 1.47845 * 122.22708 * 353.80230 * 13 11 8 15 15 C 1.52626 * 111.57603 * 231.59888 * 14 13 11 16 16 C 1.53870 * 111.90778 * 312.84743 * 15 14 13 17 17 C 1.51085 * 107.34414 * 55.95715 * 16 15 14 18 18 H 1.08994 * 108.73526 * 51.48048 * 17 16 15 19 19 C 1.45726 * 122.23003 * 174.08539 * 13 11 8 20 20 H 1.08996 * 111.06805 * 240.52674 * 19 13 11 21 21 C 1.53433 * 116.37552 * 9.88852 * 19 13 11 22 22 C 1.55473 * 101.66831 * 152.73358 * 21 19 13 23 23 N 1.45027 * 118.75279 * 176.40053 * 17 16 15 24 24 C 1.36934 * 126.56284 * 330.92836 * 23 17 16 25 25 H 1.07994 * 120.00404 * 0.02562 * 24 23 17 26 26 C 1.38813 * 119.99807 * 180.02562 * 24 23 17 27 27 N 1.31624 * 120.00306 * 359.97438 * 26 24 23 28 28 Si 1.86805 * 120.00054 * 179.97438 * 26 24 23 29 29 H 1.48503 * 109.46923 * 0.02562 * 28 26 24 30 30 H 1.48501 * 109.46998 * 119.99844 * 28 26 24 31 31 H 1.48492 * 109.47240 * 239.99802 * 28 26 24 32 32 H 1.08996 * 109.47165 * 275.35346 * 1 2 3 33 33 H 1.09005 * 109.47497 * 35.35930 * 1 2 3 34 34 H 1.09000 * 109.47214 * 155.35845 * 1 2 3 35 35 H 1.09005 * 109.46972 * 269.68365 * 6 5 4 36 36 H 1.08999 * 109.47457 * 149.68264 * 6 5 4 37 37 H 1.09004 * 109.47342 * 29.67817 * 6 5 4 38 38 H 1.09001 * 109.47395 * 66.04717 * 10 8 7 39 39 H 1.08997 * 109.47210 * 186.04989 * 10 8 7 40 40 H 1.09002 * 109.46745 * 306.05209 * 10 8 7 41 41 H 1.09007 * 109.16322 * 352.88910 * 14 13 11 42 42 H 1.08998 * 109.16490 * 112.07524 * 14 13 11 43 43 H 1.09000 * 109.64165 * 191.68121 * 15 14 13 44 44 H 1.08998 * 108.04258 * 72.93634 * 15 14 13 45 45 H 1.09002 * 109.87867 * 296.49459 * 16 15 14 46 46 H 1.08996 * 109.93908 * 175.45420 * 16 15 14 47 47 H 1.08996 * 110.98931 * 270.82976 * 21 19 13 48 48 H 1.08998 * 110.98948 * 34.64189 * 21 19 13 49 49 H 1.08994 * 109.96089 * 218.01535 * 22 21 19 50 50 H 1.09005 * 109.95674 * 96.77952 * 22 21 19 51 51 H 0.96993 * 120.00087 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4536 0.7254 0.0060 5 6 3.6025 -0.6067 0.0011 6 6 4.9022 -1.3694 0.0024 7 6 2.3540 -1.1320 0.0007 8 6 1.9591 -2.5863 0.0009 9 1 2.8555 -3.2063 0.0215 10 6 1.1536 -2.8964 -1.2624 11 6 1.1183 -2.8784 1.2170 12 8 0.5582 -1.9734 1.7986 13 7 0.9889 -4.1453 1.6583 14 6 1.5368 -5.2993 0.9142 15 6 0.4806 -6.3793 0.6960 16 6 -0.2941 -6.6939 1.9877 17 6 -0.8848 -5.3957 2.4862 18 1 -1.4284 -4.9219 1.6690 19 6 0.2942 -4.4694 2.8977 20 1 0.9616 -4.9645 3.6030 21 6 -0.4867 -3.3268 3.5602 22 6 -1.5931 -4.1051 4.3265 23 7 -1.7379 -5.4222 3.6588 24 6 -2.5264 -6.4633 4.0705 25 1 -2.5515 -7.3801 3.5003 26 6 -3.2934 -6.3402 5.2209 27 7 -3.2624 -5.2230 5.9162 28 14 -4.3697 -7.7601 5.7823 29 1 -4.2268 -8.8943 4.8344 30 1 -3.9493 -8.1935 7.1390 31 1 -5.7878 -7.3215 5.8200 32 1 -0.3633 0.0959 1.0231 33 1 -0.3634 0.8381 -0.5947 34 1 -0.3634 -0.9341 -0.4285 35 1 5.2162 -1.5540 -1.0249 36 1 4.7648 -2.3206 0.5168 37 1 5.6657 -0.7854 0.5164 38 1 1.7944 -2.7884 -2.1375 39 1 0.7770 -3.9179 -1.2116 40 1 0.3156 -2.2034 -1.3381 41 1 1.9144 -4.9571 -0.0494 42 1 2.3570 -5.7358 1.4841 43 1 0.9575 -7.2908 0.3357 44 1 -0.2181 -6.0204 -0.0597 45 1 0.3841 -7.1042 2.7360 46 1 -1.0909 -7.4077 1.7788 47 1 0.1471 -2.7691 4.2497 48 1 -0.9221 -2.6657 2.8110 49 1 -2.5345 -3.5578 4.2781 50 1 -1.2971 -4.2455 5.3662 51 1 -3.7987 -5.1370 6.7199 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049781322.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:49 Heat of formation + Delta-G solvation = 60.664833 kcal Electronic energy + Delta-G solvation = -32838.593040 eV Core-core repulsion = 28742.376885 eV Total energy + Delta-G solvation = -4096.216155 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.93565 -40.52485 -38.13038 -35.71439 -35.43908 -33.80891 -32.65848 -32.50435 -31.60347 -28.92398 -28.65824 -28.25949 -27.74616 -25.42558 -24.48833 -24.15595 -22.09488 -21.53703 -20.74070 -20.09953 -19.70005 -18.68301 -17.67994 -17.01851 -16.81740 -16.15753 -15.80843 -15.23168 -14.87366 -14.51647 -14.40910 -14.18576 -14.06369 -13.75054 -13.61034 -13.47542 -13.35064 -13.09878 -13.02440 -12.69744 -12.54763 -12.44860 -12.42251 -12.10813 -11.90579 -11.78007 -11.69958 -11.56423 -11.13628 -10.88126 -10.82540 -10.71881 -10.52072 -10.41199 -10.08244 -9.99106 -9.85599 -9.78590 -9.61783 -9.31403 -8.85523 -8.56352 -8.23820 -6.82775 -5.70219 -3.04582 1.38672 2.20657 2.76884 3.01649 3.17162 3.39469 3.44418 3.47326 4.14601 4.35284 4.40550 4.48956 4.64133 4.71598 4.83247 4.91672 5.00963 5.05073 5.10602 5.16669 5.22884 5.33618 5.38068 5.42926 5.45487 5.53778 5.57655 5.60843 5.62531 5.71596 5.74934 5.84347 5.85437 5.90093 5.95296 5.97684 6.08189 6.24024 6.27057 6.35094 6.38300 6.55569 6.71013 6.77464 6.89263 7.18871 7.58516 7.64832 7.70087 7.84606 8.25048 8.30506 8.40785 9.19239 9.83262 10.51470 11.41735 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019152 B = 0.003006 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.600082 B = 9313.674144 C =10064.369252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.060 3.940 3 N -0.376 5.376 4 O 0.092 5.908 5 C -0.034 4.034 6 C -0.073 4.073 7 C -0.182 4.182 8 C -0.031 4.031 9 H 0.100 0.900 10 C -0.147 4.147 11 C 0.521 3.479 12 O -0.518 6.518 13 N -0.599 5.599 14 C 0.107 3.893 15 C -0.129 4.129 16 C -0.116 4.116 17 C 0.160 3.840 18 H 0.018 0.982 19 C 0.117 3.883 20 H 0.078 0.922 21 C -0.132 4.132 22 C 0.172 3.828 23 N -0.593 5.593 24 C -0.226 4.226 25 H 0.079 0.921 26 C -0.007 4.007 27 N -0.919 5.919 28 Si 0.909 3.091 29 H -0.280 1.280 30 H -0.291 1.291 31 H -0.291 1.291 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.057 0.943 48 H 0.088 0.912 49 H 0.038 0.962 50 H 0.055 0.945 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.381 3.062 -16.142 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.099 4.099 3 N -0.084 5.084 4 O 0.030 5.970 5 C -0.098 4.098 6 C -0.130 4.130 7 C -0.186 4.186 8 C -0.053 4.053 9 H 0.118 0.882 10 C -0.204 4.204 11 C 0.308 3.692 12 O -0.394 6.394 13 N -0.332 5.332 14 C -0.016 4.016 15 C -0.168 4.168 16 C -0.155 4.155 17 C 0.050 3.950 18 H 0.035 0.965 19 C 0.013 3.987 20 H 0.096 0.904 21 C -0.170 4.170 22 C 0.048 3.952 23 N -0.318 5.318 24 C -0.354 4.354 25 H 0.097 0.903 26 C -0.204 4.204 27 N -0.566 5.566 28 Si 0.740 3.260 29 H -0.205 1.205 30 H -0.218 1.218 31 H -0.218 1.218 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.085 0.915 47 H 0.076 0.924 48 H 0.106 0.894 49 H 0.057 0.943 50 H 0.073 0.927 51 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 15.709 4.844 -15.644 22.693 hybrid contribution -0.622 -1.676 0.462 1.847 sum 15.087 3.167 -15.182 21.637 Atomic orbital electron populations 1.20244 0.85785 1.02471 1.04202 1.23329 0.99003 0.87728 0.99837 1.73818 0.89142 1.23892 1.21513 1.84787 1.21905 1.22050 1.68295 1.24142 0.97821 0.84301 1.03502 1.20323 0.90232 0.98606 1.03872 1.20323 0.91736 0.96013 1.10490 1.19559 0.99529 0.90868 0.95346 0.88206 1.21898 1.00539 1.02781 0.95158 1.20227 0.81569 0.82233 0.85131 1.90693 1.46465 1.44499 1.57736 1.47956 1.56385 1.05164 1.23671 1.21728 0.96503 0.86965 0.96436 1.21877 0.98093 0.97741 0.99105 1.21433 0.99283 0.99087 0.95650 1.20760 0.89935 0.93207 0.91091 0.96508 1.22411 0.93251 0.98453 0.84583 0.90377 1.23018 0.97869 0.96340 0.99809 1.21734 0.94327 0.83986 0.95169 1.44094 1.48656 1.13406 1.25615 1.19022 1.17467 0.92757 1.06169 0.90335 1.24808 1.00342 0.97413 0.97821 1.69960 1.43724 1.24761 1.18162 0.86086 0.80212 0.81366 0.78331 1.20546 1.21801 1.21793 0.88964 0.91661 0.90355 0.89461 0.89296 0.89781 0.91323 0.91051 0.91196 0.90117 0.91788 0.90759 0.92003 0.91798 0.91453 0.92431 0.89386 0.94338 0.92701 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 8.72 36.01 0.31 -0.61 16 2 C 0.06 0.85 6.69 -82.10 -0.55 0.30 16 3 N -0.38 -5.63 12.07 33.42 0.40 -5.22 16 4 O 0.09 1.21 11.20 17.18 0.19 1.40 16 5 C -0.03 -0.36 7.49 -35.30 -0.26 -0.63 16 6 C -0.07 -0.44 10.17 36.00 0.37 -0.07 16 7 C -0.18 -2.20 4.70 -104.42 -0.49 -2.69 16 8 C -0.03 -0.32 2.14 -92.93 -0.20 -0.52 16 9 H 0.10 0.78 6.18 -51.92 -0.32 0.45 16 10 C -0.15 -1.28 8.76 37.16 0.33 -0.95 16 11 C 0.52 7.47 6.84 -10.99 -0.08 7.40 16 12 O -0.52 -9.17 10.02 5.55 0.06 -9.12 16 13 N -0.60 -8.49 2.92 -164.05 -0.48 -8.97 16 14 C 0.11 1.10 5.76 -3.50 -0.02 1.08 16 15 C -0.13 -1.47 5.92 -26.47 -0.16 -1.62 16 16 C -0.12 -1.88 5.44 -27.24 -0.15 -2.03 16 17 C 0.16 3.20 2.58 -68.36 -0.18 3.02 16 18 H 0.02 0.38 8.05 -51.93 -0.42 -0.04 16 19 C 0.12 2.13 3.33 -66.80 -0.22 1.90 16 20 H 0.08 1.45 8.13 -51.93 -0.42 1.03 16 21 C -0.13 -2.74 5.12 -25.19 -0.13 -2.86 16 22 C 0.17 4.31 5.47 -1.69 -0.01 4.30 16 23 N -0.59 -14.93 3.35 -163.29 -0.55 -15.48 16 24 C -0.23 -6.15 9.93 -15.06 -0.15 -6.30 16 25 H 0.08 2.05 7.27 -52.49 -0.38 1.67 16 26 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 27 N -0.92 -27.12 10.46 55.49 0.58 -26.54 16 28 Si 0.91 21.96 29.55 -169.99 -5.02 16.93 16 29 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 30 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 31 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 32 H 0.09 1.38 7.45 -51.93 -0.39 1.00 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.97 5.49 -51.93 -0.29 0.69 16 35 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 0.45 7.38 -51.93 -0.38 0.07 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.57 6.61 -51.93 -0.34 0.23 16 40 H 0.07 0.69 5.45 -51.93 -0.28 0.41 16 41 H 0.08 0.60 4.84 -51.92 -0.25 0.34 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.06 1.05 8.11 -51.93 -0.42 0.63 16 46 H 0.07 1.16 7.67 -51.93 -0.40 0.76 16 47 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.09 1.90 6.02 -51.93 -0.31 1.58 16 49 H 0.04 1.06 7.81 -51.93 -0.41 0.66 16 50 H 0.05 1.50 7.19 -51.93 -0.37 1.13 16 51 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 382.54 15.07 5.76 5.76 Total: -1.00 -33.43 382.54 -8.64 -42.07 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -7.90 Total: -0.25 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.68 Total: -0.60 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: -0.04 Total: -56.21 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.25 Total: -7.71 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.43 -8.64 -42.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049781322.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.736 kcal (2) G-P(sol) polarization free energy of solvation -33.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds