Wall clock time and date at job start Wed Apr 1 2020 04:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30178 * 126.79954 * 2 1 4 4 O 1.20918 * 111.60053 * 179.69176 * 3 2 1 5 5 C 1.34040 * 111.57198 * 0.45584 * 4 3 2 6 6 C 1.50696 * 126.78077 * 179.83211 * 5 4 3 7 7 C 1.35451 * 106.44352 * 359.56166 * 5 4 3 8 8 C 1.50696 * 128.00967 * 180.24251 * 7 5 4 9 9 H 1.09008 * 109.47374 * 1.11381 * 8 7 5 10 10 C 1.53001 * 109.47323 * 241.11965 * 8 7 5 11 11 C 1.50694 * 109.47504 * 121.11803 * 8 7 5 12 12 O 1.21287 * 119.99958 * 20.31865 * 11 8 7 13 13 N 1.34783 * 120.00262 * 200.32186 * 11 8 7 14 14 C 1.47845 * 122.22708 * 353.80230 * 13 11 8 15 15 C 1.52626 * 111.57603 * 231.59888 * 14 13 11 16 16 C 1.53870 * 111.90778 * 312.84743 * 15 14 13 17 17 C 1.51085 * 107.34414 * 55.95715 * 16 15 14 18 18 H 1.08994 * 108.73526 * 51.48048 * 17 16 15 19 19 C 1.45726 * 122.23003 * 174.08539 * 13 11 8 20 20 H 1.08996 * 111.06805 * 240.52674 * 19 13 11 21 21 C 1.53433 * 116.37552 * 9.88852 * 19 13 11 22 22 C 1.55473 * 101.66831 * 152.73358 * 21 19 13 23 23 N 1.45027 * 118.75279 * 176.40053 * 17 16 15 24 24 C 1.36934 * 126.56284 * 330.92836 * 23 17 16 25 25 H 1.07994 * 120.00404 * 0.02562 * 24 23 17 26 26 C 1.38813 * 119.99807 * 180.02562 * 24 23 17 27 27 N 1.31624 * 120.00306 * 359.97438 * 26 24 23 28 28 Si 1.86805 * 120.00054 * 179.97438 * 26 24 23 29 29 H 1.48503 * 109.46923 * 0.02562 * 28 26 24 30 30 H 1.48501 * 109.46998 * 119.99844 * 28 26 24 31 31 H 1.48492 * 109.47240 * 239.99802 * 28 26 24 32 32 H 1.08996 * 109.47165 * 275.35346 * 1 2 3 33 33 H 1.09005 * 109.47497 * 35.35930 * 1 2 3 34 34 H 1.09000 * 109.47214 * 155.35845 * 1 2 3 35 35 H 1.09005 * 109.46972 * 269.68365 * 6 5 4 36 36 H 1.08999 * 109.47457 * 149.68264 * 6 5 4 37 37 H 1.09004 * 109.47342 * 29.67817 * 6 5 4 38 38 H 1.09001 * 109.47395 * 66.04717 * 10 8 7 39 39 H 1.08997 * 109.47210 * 186.04989 * 10 8 7 40 40 H 1.09002 * 109.46745 * 306.05209 * 10 8 7 41 41 H 1.09007 * 109.16322 * 352.88910 * 14 13 11 42 42 H 1.08998 * 109.16490 * 112.07524 * 14 13 11 43 43 H 1.09000 * 109.64165 * 191.68121 * 15 14 13 44 44 H 1.08998 * 108.04258 * 72.93634 * 15 14 13 45 45 H 1.09002 * 109.87867 * 296.49459 * 16 15 14 46 46 H 1.08996 * 109.93908 * 175.45420 * 16 15 14 47 47 H 1.08996 * 110.98931 * 270.82976 * 21 19 13 48 48 H 1.08998 * 110.98948 * 34.64189 * 21 19 13 49 49 H 1.08994 * 109.96089 * 218.01535 * 22 21 19 50 50 H 1.09005 * 109.95674 * 96.77952 * 22 21 19 51 51 H 0.96993 * 120.00087 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4536 0.7254 0.0060 5 6 3.6025 -0.6067 0.0011 6 6 4.9022 -1.3694 0.0024 7 6 2.3540 -1.1320 0.0007 8 6 1.9591 -2.5863 0.0009 9 1 2.8555 -3.2063 0.0215 10 6 1.1536 -2.8964 -1.2624 11 6 1.1183 -2.8784 1.2170 12 8 0.5582 -1.9734 1.7986 13 7 0.9889 -4.1453 1.6583 14 6 1.5368 -5.2993 0.9142 15 6 0.4806 -6.3793 0.6960 16 6 -0.2941 -6.6939 1.9877 17 6 -0.8848 -5.3957 2.4862 18 1 -1.4284 -4.9219 1.6690 19 6 0.2942 -4.4694 2.8977 20 1 0.9616 -4.9645 3.6030 21 6 -0.4867 -3.3268 3.5602 22 6 -1.5931 -4.1051 4.3265 23 7 -1.7379 -5.4222 3.6588 24 6 -2.5264 -6.4633 4.0705 25 1 -2.5515 -7.3801 3.5003 26 6 -3.2934 -6.3402 5.2209 27 7 -3.2624 -5.2230 5.9162 28 14 -4.3697 -7.7601 5.7823 29 1 -4.2268 -8.8943 4.8344 30 1 -3.9493 -8.1935 7.1390 31 1 -5.7878 -7.3215 5.8200 32 1 -0.3633 0.0959 1.0231 33 1 -0.3634 0.8381 -0.5947 34 1 -0.3634 -0.9341 -0.4285 35 1 5.2162 -1.5540 -1.0249 36 1 4.7648 -2.3206 0.5168 37 1 5.6657 -0.7854 0.5164 38 1 1.7944 -2.7884 -2.1375 39 1 0.7770 -3.9179 -1.2116 40 1 0.3156 -2.2034 -1.3381 41 1 1.9144 -4.9571 -0.0494 42 1 2.3570 -5.7358 1.4841 43 1 0.9575 -7.2908 0.3357 44 1 -0.2181 -6.0204 -0.0597 45 1 0.3841 -7.1042 2.7360 46 1 -1.0909 -7.4077 1.7788 47 1 0.1471 -2.7691 4.2497 48 1 -0.9221 -2.6657 2.8110 49 1 -2.5345 -3.5578 4.2781 50 1 -1.2971 -4.2455 5.3662 51 1 -3.7987 -5.1370 6.7199 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049781322.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:48 Heat of formation + Delta-G solvation = 39.865342 kcal Electronic energy + Delta-G solvation = -32839.494974 eV Core-core repulsion = 28742.376885 eV Total energy + Delta-G solvation = -4097.118089 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.90161 -41.75837 -39.50085 -36.93100 -36.63787 -34.74155 -34.23761 -33.84147 -32.69979 -30.69905 -29.71589 -29.64111 -28.41134 -26.65860 -26.24325 -25.20834 -23.29116 -22.79573 -22.17703 -21.37503 -21.01907 -19.81697 -18.71189 -18.57888 -17.88258 -17.36332 -17.09635 -16.74995 -16.34324 -15.76694 -15.68674 -15.36010 -15.24421 -15.01454 -14.79904 -14.38724 -14.31163 -14.16842 -13.98923 -13.82504 -13.75478 -13.63483 -13.35024 -13.26442 -13.13116 -13.04655 -12.84070 -12.75353 -12.72801 -12.41331 -12.19249 -12.05557 -11.90634 -11.73496 -11.68939 -11.65679 -11.51787 -11.35131 -10.81123 -10.76215 -10.29592 -9.93368 -9.47637 -8.90218 -7.84413 -5.21201 0.54120 1.20842 1.45100 1.46518 1.56655 1.70692 2.03738 2.29786 2.50210 3.22966 3.34536 3.36068 3.55300 3.59025 3.83465 3.86569 4.00136 4.04884 4.12310 4.12653 4.21273 4.30007 4.34049 4.40468 4.49137 4.58667 4.60175 4.62602 4.71517 4.74160 4.77026 4.79240 4.80391 4.89145 4.94022 4.96926 4.98610 5.07169 5.13678 5.15964 5.21193 5.29175 5.32396 5.43351 5.47771 5.50071 5.61020 5.65635 5.75682 6.18314 6.60144 7.05207 7.30742 7.38553 7.76048 8.46209 9.27517 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019152 B = 0.003006 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.600082 B = 9313.674144 C =10064.369252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.039 3.961 3 N -0.409 5.409 4 O 0.083 5.917 5 C -0.019 4.019 6 C -0.074 4.074 7 C -0.200 4.200 8 C -0.017 4.017 9 H 0.141 0.859 10 C -0.146 4.146 11 C 0.513 3.487 12 O -0.561 6.561 13 N -0.598 5.598 14 C 0.099 3.901 15 C -0.120 4.120 16 C -0.113 4.113 17 C 0.153 3.847 18 H 0.000 1.000 19 C 0.135 3.865 20 H 0.078 0.922 21 C -0.114 4.114 22 C 0.183 3.817 23 N -0.613 5.613 24 C -0.229 4.229 25 H 0.090 0.910 26 C -0.072 4.072 27 N -0.956 5.956 28 Si 0.978 3.022 29 H -0.260 1.260 30 H -0.293 1.293 31 H -0.297 1.297 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.123 0.877 42 H 0.086 0.914 43 H 0.114 0.886 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.078 0.922 49 H -0.005 1.005 50 H 0.022 0.978 51 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.807 0.406 -19.229 27.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 N -0.119 5.119 4 O 0.022 5.978 5 C -0.083 4.083 6 C -0.131 4.131 7 C -0.205 4.205 8 C -0.038 4.038 9 H 0.159 0.841 10 C -0.203 4.203 11 C 0.302 3.698 12 O -0.440 6.440 13 N -0.331 5.331 14 C -0.021 4.021 15 C -0.159 4.159 16 C -0.151 4.151 17 C 0.045 3.955 18 H 0.017 0.983 19 C 0.030 3.970 20 H 0.096 0.904 21 C -0.153 4.153 22 C 0.057 3.943 23 N -0.338 5.338 24 C -0.358 4.358 25 H 0.108 0.892 26 C -0.264 4.264 27 N -0.605 5.605 28 Si 0.807 3.193 29 H -0.183 1.183 30 H -0.220 1.220 31 H -0.225 1.225 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.134 0.866 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.068 0.932 41 H 0.141 0.859 42 H 0.105 0.895 43 H 0.132 0.868 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.072 0.928 47 H 0.074 0.926 48 H 0.097 0.903 49 H 0.013 0.987 50 H 0.040 0.960 51 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 19.181 2.154 -18.797 26.942 hybrid contribution -1.671 -0.795 1.394 2.317 sum 17.510 1.359 -17.403 24.724 Atomic orbital electron populations 1.20143 0.86172 1.03157 1.02642 1.23583 0.99253 0.88857 1.00241 1.73802 0.89973 1.24951 1.23128 1.84738 1.21133 1.23693 1.68281 1.25026 0.99372 0.83262 1.00638 1.20649 0.87771 0.98597 1.06089 1.20553 0.91826 0.96420 1.11657 1.19600 1.00324 0.90362 0.93536 0.84103 1.21944 1.00256 1.02900 0.95182 1.21067 0.81292 0.81524 0.85875 1.90692 1.48154 1.45822 1.59298 1.48033 1.55905 1.06717 1.22417 1.22125 0.96399 0.85254 0.98337 1.21871 0.98102 0.99965 0.95949 1.21421 0.99284 0.96191 0.98216 1.20962 0.89698 0.96226 0.88598 0.98284 1.21930 0.92748 0.95971 0.86385 0.90393 1.22725 0.96841 0.96532 0.99162 1.21417 0.93777 0.84682 0.94382 1.44365 1.49592 1.12775 1.27024 1.19456 1.17041 0.93428 1.05883 0.89197 1.25705 1.02310 0.99981 0.98423 1.70200 1.44873 1.26968 1.18490 0.85007 0.77650 0.78843 0.77846 1.18349 1.22013 1.22463 0.91657 0.90862 0.89761 0.86581 0.87506 0.88779 0.88568 0.89782 0.93191 0.85884 0.89538 0.86825 0.91921 0.91879 0.92795 0.92557 0.90322 0.98658 0.96008 0.94607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.77 8.72 71.24 0.62 -1.15 16 2 C 0.04 1.10 6.69 43.58 0.29 1.39 16 3 N -0.41 -12.34 12.07 -49.57 -0.60 -12.93 16 4 O 0.08 2.09 11.20 71.64 0.80 2.90 16 5 C -0.02 -0.36 7.49 25.04 0.19 -0.17 16 6 C -0.07 -0.52 10.17 71.23 0.72 0.21 16 7 C -0.20 -4.41 4.70 -19.74 -0.09 -4.50 16 8 C -0.02 -0.28 2.14 -12.29 -0.03 -0.31 16 9 H 0.14 1.23 6.18 -2.38 -0.01 1.21 16 10 C -0.15 -1.94 8.76 71.98 0.63 -1.31 16 11 C 0.51 13.68 6.84 87.65 0.60 14.28 16 12 O -0.56 -20.13 10.02 -3.05 -0.03 -20.16 16 13 N -0.60 -15.35 2.92 -791.33 -2.31 -17.67 16 14 C 0.10 1.50 5.76 86.00 0.49 1.99 16 15 C -0.12 -2.16 5.92 30.76 0.18 -1.97 16 16 C -0.11 -3.41 5.44 30.26 0.16 -3.25 16 17 C 0.15 6.15 2.58 45.50 0.12 6.26 16 18 H 0.00 -0.01 8.05 -2.39 -0.02 -0.03 16 19 C 0.14 4.85 3.33 46.14 0.15 5.01 16 20 H 0.08 2.83 8.13 -2.39 -0.02 2.81 16 21 C -0.11 -4.98 5.12 31.59 0.16 -4.82 16 22 C 0.18 9.82 5.47 86.87 0.47 10.30 16 23 N -0.61 -32.05 3.35 -670.53 -2.25 -34.30 16 24 C -0.23 -12.79 9.93 84.03 0.83 -11.95 16 25 H 0.09 4.69 7.27 -2.91 -0.02 4.67 16 26 C -0.07 -4.15 5.49 84.86 0.47 -3.69 16 27 N -0.96 -59.60 10.46 21.65 0.23 -59.37 16 28 Si 0.98 46.19 29.55 68.60 2.03 48.22 16 29 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 30 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 31 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 32 H 0.06 2.14 7.45 -2.39 -0.02 2.12 16 33 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.08 2.17 5.49 -2.39 -0.01 2.15 16 35 H 0.12 0.24 8.14 -2.38 -0.02 0.22 16 36 H 0.11 0.43 7.38 -2.39 -0.02 0.41 16 37 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 38 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.08 0.92 6.61 -2.39 -0.02 0.90 16 40 H 0.05 0.89 5.45 -2.39 -0.01 0.87 16 41 H 0.12 0.90 4.84 -2.38 -0.01 0.88 16 42 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.06 1.92 8.11 -2.39 -0.02 1.90 16 46 H 0.05 1.76 7.67 -2.39 -0.02 1.74 16 47 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 48 H 0.08 3.61 6.02 -2.39 -0.01 3.59 16 49 H 0.00 -0.30 7.81 -2.39 -0.02 -0.31 16 50 H 0.02 1.29 7.19 -2.38 -0.02 1.27 16 51 H 0.24 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -81.56 382.54 4.80 -76.76 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.94 Total: 10.22 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 5.99 Total: 6.33 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -4.93 Total: -124.27 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: 0.77 Total: -17.26 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -81.56 4.80 -76.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049781322.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.629 kcal (2) G-P(sol) polarization free energy of solvation -81.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds