Wall clock time and date at job start Wed Apr 1 2020 04:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30169 * 126.80185 * 2 1 4 4 O 1.20924 * 111.60559 * 179.69311 * 3 2 1 5 5 C 1.34040 * 111.56465 * 0.44903 * 4 3 2 6 6 C 1.50703 * 126.77692 * 179.83095 * 5 4 3 7 7 C 1.35450 * 106.44860 * 359.56731 * 5 4 3 8 8 C 1.50692 * 128.01003 * 180.24217 * 7 5 4 9 9 C 1.53001 * 109.47440 * 90.00159 * 8 7 5 10 10 C 1.50702 * 109.47137 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00315 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99732 * 179.97438 * 10 9 8 13 13 C 1.45732 * 117.75987 * 0.02562 * 12 10 9 14 14 C 1.53050 * 109.55634 * 141.08490 * 13 12 10 15 15 C 1.52939 * 108.50058 * 53.79540 * 14 13 12 16 16 C 1.52926 * 109.78955 * 294.01237 * 15 14 13 17 17 H 1.08994 * 110.51634 * 292.89243 * 16 15 14 18 18 C 1.44193 * 117.75867 * 179.73425 * 12 10 9 19 19 H 1.09004 * 109.22722 * 333.41359 * 18 12 10 20 20 C 1.54563 * 111.47693 * 93.66361 * 18 12 10 21 21 C 1.54056 * 103.67102 * 153.28270 * 20 18 12 22 22 N 1.46886 * 107.70654 * 342.85058 * 21 20 18 23 23 C 1.36938 * 125.58475 * 177.00460 * 22 21 20 24 24 H 1.07999 * 120.00579 * 180.02562 * 23 22 21 25 25 C 1.38813 * 119.99765 * 0.02562 * 23 22 21 26 26 N 1.31621 * 120.00250 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00031 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47382 * 89.99695 * 27 25 23 29 29 H 1.48506 * 109.47344 * 209.99953 * 27 25 23 30 30 H 1.48503 * 109.47275 * 329.99570 * 27 25 23 31 31 H 1.09002 * 109.46956 * 270.04257 * 1 2 3 32 32 H 1.09001 * 109.46979 * 30.04345 * 1 2 3 33 33 H 1.09000 * 109.47042 * 150.04078 * 1 2 3 34 34 H 1.09002 * 109.47152 * 269.68481 * 6 5 4 35 35 H 1.09001 * 109.46980 * 149.68581 * 6 5 4 36 36 H 1.09004 * 109.47113 * 29.68562 * 6 5 4 37 37 H 1.09001 * 109.47603 * 210.00035 * 8 7 5 38 38 H 1.09005 * 109.47456 * 329.99676 * 8 7 5 39 39 H 1.09001 * 109.46893 * 300.00000 * 9 8 7 40 40 H 1.08994 * 109.47181 * 59.99806 * 9 8 7 41 41 H 1.08999 * 109.45219 * 261.10417 * 13 12 10 42 42 H 1.08993 * 109.45860 * 21.05558 * 13 12 10 43 43 H 1.09002 * 109.63458 * 173.50227 * 14 13 12 44 44 H 1.09007 * 109.63107 * 293.89322 * 14 13 12 45 45 H 1.08998 * 109.41426 * 54.10532 * 15 14 13 46 46 H 1.09001 * 109.41770 * 173.91272 * 15 14 13 47 47 H 1.09002 * 110.62238 * 34.73919 * 20 18 12 48 48 H 1.08995 * 110.71743 * 271.87573 * 20 18 12 49 49 H 1.08997 * 109.81405 * 223.29886 * 21 20 18 50 50 H 1.09000 * 109.86708 * 102.42663 * 21 20 18 51 51 H 0.96996 * 120.00014 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 0.0060 5 6 3.6025 -0.6068 0.0012 6 6 4.9022 -1.3696 0.0025 7 6 2.3540 -1.1321 0.0008 8 6 1.9591 -2.5864 0.0011 9 6 1.8247 -3.0781 1.4437 10 6 1.4304 -4.5326 1.4440 11 8 1.2720 -5.1182 0.3939 12 7 1.2539 -5.1827 2.6114 13 6 1.4564 -4.4318 3.8439 14 6 0.4049 -4.8471 4.8755 15 6 0.4524 -6.3677 5.0317 16 6 0.0083 -7.0361 3.7299 17 1 -1.0478 -6.8426 3.5422 18 6 0.8712 -6.5718 2.5554 19 1 0.3395 -6.7603 1.6226 20 6 2.1041 -7.5015 2.6223 21 6 1.5465 -8.8024 3.2306 22 7 0.2548 -8.4861 3.8543 23 6 -0.5833 -9.3887 4.4528 24 1 -1.5158 -9.0560 4.8843 25 6 -0.2344 -10.7312 4.5048 26 7 0.9022 -11.1367 3.9794 27 14 -1.3780 -11.9625 5.3205 28 1 -2.3240 -12.5033 4.3117 29 1 -0.5792 -13.0743 5.8961 30 1 -2.1401 -11.2889 6.4026 31 1 -0.3633 0.0008 1.0277 32 1 -0.3633 0.8896 -0.5145 33 1 -0.3633 -0.8903 -0.5132 34 1 5.2162 -1.5542 -1.0248 35 1 4.7648 -2.3207 0.5169 36 1 5.6657 -0.7855 0.5165 37 1 1.0053 -2.7041 -0.5131 38 1 2.7230 -3.1705 -0.5122 39 1 2.7786 -2.9604 1.9580 40 1 1.0609 -2.4941 1.9570 41 1 2.4519 -4.6398 4.2362 42 1 1.3627 -3.3654 3.6389 43 1 0.6238 -4.3736 5.8326 44 1 -0.5841 -4.5418 4.5337 45 1 1.4708 -6.6760 5.2682 46 1 -0.2137 -6.6700 5.8399 47 1 2.8718 -7.0752 3.2680 48 1 2.5029 -7.6854 1.6247 49 1 2.2366 -9.1838 3.9832 50 1 1.4059 -9.5471 2.4472 51 1 1.1458 -12.0748 4.0154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049888848.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:55 Heat of formation + Delta-G solvation = 41.001101 kcal Electronic energy + Delta-G solvation = -31441.613468 eV Core-core repulsion = 27344.544630 eV Total energy + Delta-G solvation = -4097.068839 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.16113 -40.52416 -38.13724 -36.07545 -35.42210 -34.05469 -32.60810 -32.52497 -31.74495 -29.13910 -28.92696 -28.48674 -27.92721 -25.68939 -24.40421 -24.09883 -22.03384 -21.64803 -20.45005 -20.23873 -19.73197 -18.13090 -17.87622 -17.46009 -16.92520 -16.84752 -15.87954 -15.59551 -14.80530 -14.70660 -14.36934 -14.25017 -13.98436 -13.90776 -13.76941 -13.53794 -13.41812 -13.25577 -13.16293 -12.92431 -12.73253 -12.53579 -12.47448 -12.21485 -12.05753 -11.95554 -11.54651 -11.41497 -11.08790 -11.02541 -10.96813 -10.78132 -10.68575 -10.49499 -10.13426 -10.10697 -10.06144 -9.68095 -9.60336 -9.57076 -9.30631 -8.61687 -8.32756 -6.88231 -5.72993 -3.07818 1.19528 1.92796 2.71369 2.84388 3.16641 3.38803 3.43794 3.45528 3.92086 4.17911 4.40150 4.46656 4.54529 4.75341 4.81639 4.92444 4.93982 5.04022 5.07007 5.10940 5.19825 5.22211 5.26749 5.28288 5.39365 5.41441 5.45675 5.48121 5.54898 5.62011 5.63730 5.69020 5.75532 5.81400 5.87522 5.97650 6.02002 6.06592 6.21098 6.27766 6.36309 6.55984 6.56273 6.73126 6.96554 7.07204 7.52607 7.55298 7.63234 7.81896 8.03886 8.22958 8.32580 9.19250 9.79081 10.43893 11.37836 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024464 B = 0.002232 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.271279 B =12543.448673 C =12851.923138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.024 3.976 3 N -0.370 5.370 4 O 0.095 5.905 5 C -0.030 4.030 6 C -0.076 4.076 7 C -0.197 4.197 8 C -0.026 4.026 9 C -0.134 4.134 10 C 0.504 3.496 11 O -0.540 6.540 12 N -0.587 5.587 13 C 0.108 3.892 14 C -0.132 4.132 15 C -0.131 4.131 16 C 0.162 3.838 17 H 0.053 0.947 18 C 0.136 3.864 19 H 0.092 0.908 20 C -0.149 4.149 21 C 0.179 3.821 22 N -0.596 5.596 23 C -0.228 4.228 24 H 0.078 0.922 25 C -0.007 4.007 26 N -0.920 5.920 27 Si 0.912 3.088 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.281 1.281 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.063 0.937 47 H 0.054 0.946 48 H 0.061 0.939 49 H 0.040 0.960 50 H 0.052 0.948 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.583 21.927 -4.675 23.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 N -0.076 5.076 4 O 0.030 5.970 5 C -0.093 4.093 6 C -0.133 4.133 7 C -0.201 4.201 8 C -0.064 4.064 9 C -0.174 4.174 10 C 0.291 3.709 11 O -0.418 6.418 12 N -0.318 5.318 13 C -0.015 4.015 14 C -0.171 4.171 15 C -0.171 4.171 16 C 0.053 3.947 17 H 0.071 0.929 18 C 0.032 3.968 19 H 0.110 0.890 20 C -0.189 4.189 21 C 0.054 3.946 22 N -0.320 5.320 23 C -0.356 4.356 24 H 0.096 0.904 25 C -0.203 4.203 26 N -0.567 5.567 27 Si 0.743 3.257 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.207 1.207 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.058 0.942 50 H 0.070 0.930 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.284 22.632 -5.154 23.805 hybrid contribution -0.567 -1.445 0.645 1.681 sum 4.717 21.187 -4.510 22.170 Atomic orbital electron populations 1.20195 0.85956 1.03880 1.03507 1.23483 0.98952 0.88505 1.02571 1.73841 0.89313 1.23999 1.20437 1.84794 1.21633 1.22598 1.67957 1.24301 0.98314 0.83734 1.02972 1.20375 0.89970 0.98692 1.04276 1.21004 0.91555 0.97585 1.09964 1.19619 1.03717 0.87219 0.95829 1.21684 1.03595 0.93446 0.98659 1.20659 0.77516 0.88853 0.83835 1.90701 1.51005 1.68987 1.31061 1.47112 1.67753 1.11118 1.05844 1.21523 0.99515 0.95258 0.85207 1.21841 0.98708 0.98425 0.98105 1.22122 1.02336 0.92204 1.00428 1.20820 0.96265 0.86323 0.91309 0.92861 1.21132 0.96675 0.78433 1.00604 0.89009 1.23069 0.96979 0.98248 1.00601 1.21060 0.86539 0.90814 0.96230 1.44501 1.20064 1.00419 1.67003 1.19008 0.99553 0.87380 1.29629 0.90424 1.24807 0.97507 0.96979 1.01013 1.69971 1.22239 1.14940 1.49577 0.86121 0.79654 0.81101 0.78871 1.21575 1.21698 1.20716 0.90060 0.90597 0.89798 0.89296 0.88873 0.89777 0.89602 0.89619 0.88978 0.88850 0.91884 0.90390 0.91161 0.91714 0.91978 0.91870 0.92705 0.91983 0.94218 0.92965 0.93714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.59 10.39 36.01 0.37 -0.22 16 2 C 0.02 0.24 7.33 -82.10 -0.60 -0.36 16 3 N -0.37 -4.33 12.07 33.42 0.40 -3.92 16 4 O 0.09 1.01 11.20 17.18 0.19 1.20 16 5 C -0.03 -0.26 7.49 -35.30 -0.26 -0.52 16 6 C -0.08 -0.40 10.25 36.01 0.37 -0.03 16 7 C -0.20 -1.84 5.58 -104.42 -0.58 -2.42 16 8 C -0.03 -0.24 4.75 -27.89 -0.13 -0.37 16 9 C -0.13 -1.23 4.01 -27.88 -0.11 -1.34 16 10 C 0.50 6.88 7.59 -10.98 -0.08 6.79 16 11 O -0.54 -9.41 15.25 5.56 0.08 -9.32 16 12 N -0.59 -8.33 2.79 -167.43 -0.47 -8.80 16 13 C 0.11 1.19 6.06 -4.43 -0.03 1.16 16 14 C -0.13 -1.60 6.10 -26.74 -0.16 -1.76 16 15 C -0.13 -2.20 5.31 -26.80 -0.14 -2.34 16 16 C 0.16 3.19 3.27 -67.38 -0.22 2.97 16 17 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 18 C 0.14 2.47 2.76 -68.36 -0.19 2.28 16 19 H 0.09 1.88 7.08 -51.93 -0.37 1.51 16 20 C -0.15 -2.89 6.46 -25.36 -0.16 -3.05 16 21 C 0.18 4.31 5.39 -3.28 -0.02 4.29 16 22 N -0.60 -14.69 2.93 -163.94 -0.48 -15.18 16 23 C -0.23 -6.16 10.27 -15.06 -0.15 -6.32 16 24 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 25 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 26 N -0.92 -26.73 10.29 55.49 0.57 -26.16 16 27 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 28 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 30 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.57 7.66 -51.93 -0.40 0.17 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.44 8.05 -51.93 -0.42 0.02 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.86 7.62 -51.93 -0.40 0.46 16 38 H 0.09 0.82 8.04 -51.93 -0.42 0.41 16 39 H 0.09 0.70 8.03 -51.93 -0.42 0.28 16 40 H 0.09 0.74 7.32 -51.93 -0.38 0.36 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 0.63 5.81 -51.93 -0.30 0.33 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 45 H 0.06 1.12 8.02 -51.93 -0.42 0.71 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 49 H 0.04 1.05 7.60 -51.93 -0.39 0.66 16 50 H 0.05 1.42 7.25 -51.93 -0.38 1.04 16 51 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 402.07 15.07 6.06 6.06 Total: -1.00 -32.74 402.07 -9.35 -42.09 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -8.48 Total: -1.28 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -2.21 Total: -1.52 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.03 Total: -54.06 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.28 Total: -8.12 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.74 -9.35 -42.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049888848.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.091 kcal (2) G-P(sol) polarization free energy of solvation -32.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds