Wall clock time and date at job start Wed Apr 1 2020 04:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30169 * 126.80185 * 2 1 4 4 O 1.20924 * 111.60559 * 179.69311 * 3 2 1 5 5 C 1.34040 * 111.56465 * 0.44903 * 4 3 2 6 6 C 1.50703 * 126.77692 * 179.83095 * 5 4 3 7 7 C 1.35450 * 106.44860 * 359.56731 * 5 4 3 8 8 C 1.50692 * 128.01003 * 180.24217 * 7 5 4 9 9 C 1.53001 * 109.47440 * 90.00159 * 8 7 5 10 10 C 1.50702 * 109.47137 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00315 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99732 * 179.97438 * 10 9 8 13 13 C 1.45732 * 117.75987 * 0.02562 * 12 10 9 14 14 C 1.53050 * 109.55634 * 141.08490 * 13 12 10 15 15 C 1.52939 * 108.50058 * 53.79540 * 14 13 12 16 16 C 1.52926 * 109.78955 * 294.01237 * 15 14 13 17 17 H 1.08994 * 110.51634 * 292.89243 * 16 15 14 18 18 C 1.44193 * 117.75867 * 179.73425 * 12 10 9 19 19 H 1.09004 * 109.22722 * 333.41359 * 18 12 10 20 20 C 1.54563 * 111.47693 * 93.66361 * 18 12 10 21 21 C 1.54056 * 103.67102 * 153.28270 * 20 18 12 22 22 N 1.46886 * 107.70654 * 342.85058 * 21 20 18 23 23 C 1.36938 * 125.58475 * 177.00460 * 22 21 20 24 24 H 1.07999 * 120.00579 * 180.02562 * 23 22 21 25 25 C 1.38813 * 119.99765 * 0.02562 * 23 22 21 26 26 N 1.31621 * 120.00250 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00031 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47382 * 89.99695 * 27 25 23 29 29 H 1.48506 * 109.47344 * 209.99953 * 27 25 23 30 30 H 1.48503 * 109.47275 * 329.99570 * 27 25 23 31 31 H 1.09002 * 109.46956 * 270.04257 * 1 2 3 32 32 H 1.09001 * 109.46979 * 30.04345 * 1 2 3 33 33 H 1.09000 * 109.47042 * 150.04078 * 1 2 3 34 34 H 1.09002 * 109.47152 * 269.68481 * 6 5 4 35 35 H 1.09001 * 109.46980 * 149.68581 * 6 5 4 36 36 H 1.09004 * 109.47113 * 29.68562 * 6 5 4 37 37 H 1.09001 * 109.47603 * 210.00035 * 8 7 5 38 38 H 1.09005 * 109.47456 * 329.99676 * 8 7 5 39 39 H 1.09001 * 109.46893 * 300.00000 * 9 8 7 40 40 H 1.08994 * 109.47181 * 59.99806 * 9 8 7 41 41 H 1.08999 * 109.45219 * 261.10417 * 13 12 10 42 42 H 1.08993 * 109.45860 * 21.05558 * 13 12 10 43 43 H 1.09002 * 109.63458 * 173.50227 * 14 13 12 44 44 H 1.09007 * 109.63107 * 293.89322 * 14 13 12 45 45 H 1.08998 * 109.41426 * 54.10532 * 15 14 13 46 46 H 1.09001 * 109.41770 * 173.91272 * 15 14 13 47 47 H 1.09002 * 110.62238 * 34.73919 * 20 18 12 48 48 H 1.08995 * 110.71743 * 271.87573 * 20 18 12 49 49 H 1.08997 * 109.81405 * 223.29886 * 21 20 18 50 50 H 1.09000 * 109.86708 * 102.42663 * 21 20 18 51 51 H 0.96996 * 120.00014 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 0.0060 5 6 3.6025 -0.6068 0.0012 6 6 4.9022 -1.3696 0.0025 7 6 2.3540 -1.1321 0.0008 8 6 1.9591 -2.5864 0.0011 9 6 1.8247 -3.0781 1.4437 10 6 1.4304 -4.5326 1.4440 11 8 1.2720 -5.1182 0.3939 12 7 1.2539 -5.1827 2.6114 13 6 1.4564 -4.4318 3.8439 14 6 0.4049 -4.8471 4.8755 15 6 0.4524 -6.3677 5.0317 16 6 0.0083 -7.0361 3.7299 17 1 -1.0478 -6.8426 3.5422 18 6 0.8712 -6.5718 2.5554 19 1 0.3395 -6.7603 1.6226 20 6 2.1041 -7.5015 2.6223 21 6 1.5465 -8.8024 3.2306 22 7 0.2548 -8.4861 3.8543 23 6 -0.5833 -9.3887 4.4528 24 1 -1.5158 -9.0560 4.8843 25 6 -0.2344 -10.7312 4.5048 26 7 0.9022 -11.1367 3.9794 27 14 -1.3780 -11.9625 5.3205 28 1 -2.3240 -12.5033 4.3117 29 1 -0.5792 -13.0743 5.8961 30 1 -2.1401 -11.2889 6.4026 31 1 -0.3633 0.0008 1.0277 32 1 -0.3633 0.8896 -0.5145 33 1 -0.3633 -0.8903 -0.5132 34 1 5.2162 -1.5542 -1.0248 35 1 4.7648 -2.3207 0.5169 36 1 5.6657 -0.7855 0.5165 37 1 1.0053 -2.7041 -0.5131 38 1 2.7230 -3.1705 -0.5122 39 1 2.7786 -2.9604 1.9580 40 1 1.0609 -2.4941 1.9570 41 1 2.4519 -4.6398 4.2362 42 1 1.3627 -3.3654 3.6389 43 1 0.6238 -4.3736 5.8326 44 1 -0.5841 -4.5418 4.5337 45 1 1.4708 -6.6760 5.2682 46 1 -0.2137 -6.6700 5.8399 47 1 2.8718 -7.0752 3.2680 48 1 2.5029 -7.6854 1.6247 49 1 2.2366 -9.1838 3.9832 50 1 1.4059 -9.5471 2.4472 51 1 1.1458 -12.0748 4.0154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049888848.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:54 Heat of formation + Delta-G solvation = 22.424437 kcal Electronic energy + Delta-G solvation = -31442.419013 eV Core-core repulsion = 27344.544630 eV Total energy + Delta-G solvation = -4097.874383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.87660 -41.75183 -39.52140 -36.90401 -36.77611 -34.72811 -34.25309 -33.86348 -32.69233 -30.85758 -29.93582 -29.56727 -28.60287 -26.83329 -26.05840 -25.31630 -23.27151 -22.49644 -22.01966 -21.17654 -20.86577 -19.41707 -18.78575 -18.62976 -18.40358 -17.68186 -16.89846 -16.80013 -16.71850 -16.02707 -15.45956 -15.34667 -15.10263 -15.00490 -14.82027 -14.32466 -14.24362 -14.22152 -13.91003 -13.89837 -13.74534 -13.63050 -13.42145 -13.40866 -13.22840 -13.04934 -12.88857 -12.81959 -12.62589 -12.33282 -12.26130 -12.21040 -12.04518 -11.88227 -11.69294 -11.60084 -11.54996 -11.16729 -10.82257 -10.70466 -10.68330 -10.01618 -9.56145 -8.90785 -7.84429 -5.20985 0.53065 1.22719 1.45367 1.47477 1.55759 1.66822 2.02364 2.26154 2.49913 3.25255 3.33089 3.49041 3.57690 3.62783 3.84645 3.88741 3.94022 4.03857 4.04141 4.14379 4.17157 4.31001 4.35308 4.37562 4.45283 4.57935 4.62003 4.66613 4.68144 4.70201 4.73438 4.74701 4.84951 4.87396 4.89626 4.97289 4.99854 5.07882 5.08660 5.11856 5.21042 5.21978 5.37847 5.39789 5.42820 5.56568 5.64260 5.73326 5.74240 6.19220 6.46674 7.09046 7.24275 7.35225 7.76213 8.40191 9.25446 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024464 B = 0.002232 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.271279 B =12543.448673 C =12851.923138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.018 3.982 3 N -0.401 5.401 4 O 0.081 5.919 5 C -0.021 4.021 6 C -0.078 4.078 7 C -0.207 4.207 8 C -0.018 4.018 9 C -0.121 4.121 10 C 0.503 3.497 11 O -0.584 6.584 12 N -0.588 5.588 13 C 0.103 3.897 14 C -0.123 4.123 15 C -0.121 4.121 16 C 0.156 3.844 17 H 0.046 0.954 18 C 0.155 3.845 19 H 0.063 0.937 20 C -0.133 4.133 21 C 0.191 3.809 22 N -0.617 5.617 23 C -0.235 4.235 24 H 0.084 0.916 25 C -0.067 4.067 26 N -0.952 5.952 27 Si 0.978 3.022 28 H -0.288 1.288 29 H -0.295 1.295 30 H -0.266 1.266 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.076 0.924 42 H 0.121 0.879 43 H 0.102 0.898 44 H 0.070 0.930 45 H 0.048 0.952 46 H 0.048 0.952 47 H 0.074 0.926 48 H 0.061 0.939 49 H 0.008 0.992 50 H 0.010 0.990 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.815 24.743 -3.501 25.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.140 4.140 3 N -0.110 5.110 4 O 0.019 5.981 5 C -0.085 4.085 6 C -0.135 4.135 7 C -0.211 4.211 8 C -0.056 4.056 9 C -0.161 4.161 10 C 0.293 3.707 11 O -0.464 6.464 12 N -0.319 5.319 13 C -0.018 4.018 14 C -0.161 4.161 15 C -0.161 4.161 16 C 0.049 3.951 17 H 0.064 0.936 18 C 0.049 3.951 19 H 0.081 0.919 20 C -0.172 4.172 21 C 0.065 3.935 22 N -0.341 5.341 23 C -0.364 4.364 24 H 0.101 0.899 25 C -0.260 4.260 26 N -0.601 5.601 27 Si 0.806 3.194 28 H -0.216 1.216 29 H -0.222 1.222 30 H -0.191 1.191 31 H 0.113 0.887 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.094 0.906 42 H 0.139 0.861 43 H 0.121 0.879 44 H 0.089 0.911 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.093 0.907 48 H 0.080 0.920 49 H 0.026 0.974 50 H 0.028 0.972 51 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 5.521 25.522 -3.958 26.410 hybrid contribution -0.651 -2.301 0.229 2.402 sum 4.870 23.221 -3.729 24.018 Atomic orbital electron populations 1.20305 0.84598 1.04259 1.04512 1.23923 1.00018 0.88493 1.01607 1.73843 0.89863 1.25048 1.22254 1.84763 1.21387 1.23603 1.68310 1.24895 0.99452 0.83122 1.00999 1.20578 0.88753 0.98812 1.05316 1.20970 0.91745 0.97213 1.11166 1.19493 1.03078 0.87129 0.95935 1.21699 1.05574 0.89694 0.99110 1.21464 0.76134 0.90390 0.82706 1.90696 1.52709 1.70301 1.32664 1.47150 1.67680 1.09352 1.07712 1.21867 0.99680 0.97032 0.83249 1.21810 0.99712 0.94246 1.00328 1.21908 1.00771 0.95890 0.97523 1.21040 0.96374 0.84001 0.93706 0.93588 1.20576 0.95124 0.81073 0.98360 0.91921 1.22859 0.97802 0.96169 1.00403 1.20721 0.86293 0.92341 0.94129 1.44763 1.19927 1.02603 1.66833 1.19388 0.99927 0.88138 1.28897 0.89868 1.25653 0.99133 0.98896 1.02323 1.70197 1.24033 1.14657 1.51251 0.85084 0.77676 0.78509 0.78100 1.21560 1.22178 1.19112 0.88655 0.90514 0.89148 0.88287 0.87855 0.88218 0.90655 0.90075 0.86187 0.86478 0.90606 0.86072 0.87934 0.91129 0.93359 0.93346 0.90707 0.92021 0.97388 0.97219 0.94471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.39 71.24 0.74 -0.30 16 2 C 0.02 0.33 7.33 43.58 0.32 0.65 16 3 N -0.40 -8.84 12.07 -49.56 -0.60 -9.43 16 4 O 0.08 1.59 11.20 71.63 0.80 2.39 16 5 C -0.02 -0.31 7.49 25.04 0.19 -0.13 16 6 C -0.08 -0.57 10.25 71.24 0.73 0.16 16 7 C -0.21 -3.33 5.58 -19.74 -0.11 -3.44 16 8 C -0.02 -0.29 4.75 29.85 0.14 -0.15 16 9 C -0.12 -1.71 4.01 29.85 0.12 -1.59 16 10 C 0.50 12.41 7.59 87.66 0.66 13.07 16 11 O -0.58 -19.85 15.25 -3.03 -0.05 -19.89 16 12 N -0.59 -15.09 2.79 -802.01 -2.24 -17.33 16 13 C 0.10 1.76 6.06 86.54 0.52 2.28 16 14 C -0.12 -2.46 6.10 30.59 0.19 -2.27 16 15 C -0.12 -3.89 5.31 30.55 0.16 -3.73 16 16 C 0.16 6.17 3.27 44.74 0.15 6.32 16 17 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 18 C 0.15 5.58 2.76 45.94 0.13 5.71 16 19 H 0.06 2.63 7.08 -2.38 -0.02 2.61 16 20 C -0.13 -5.19 6.46 31.48 0.20 -4.99 16 21 C 0.19 9.69 5.39 86.66 0.47 10.15 16 22 N -0.62 -31.46 2.93 -672.58 -1.97 -33.44 16 23 C -0.23 -13.05 10.27 84.03 0.86 -12.19 16 24 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 25 C -0.07 -3.84 5.49 84.86 0.47 -3.38 16 26 N -0.95 -57.95 10.29 21.65 0.22 -57.73 16 27 Si 0.98 45.93 29.55 68.60 2.03 47.96 16 28 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 29 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 30 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 31 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.05 7.66 -2.39 -0.02 1.03 16 34 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.10 0.59 8.05 -2.39 -0.02 0.57 16 36 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 37 H 0.07 1.38 7.62 -2.39 -0.02 1.36 16 38 H 0.08 1.38 8.04 -2.38 -0.02 1.36 16 39 H 0.12 1.12 8.03 -2.39 -0.02 1.11 16 40 H 0.12 1.19 7.32 -2.39 -0.02 1.17 16 41 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.12 1.13 5.81 -2.39 -0.01 1.11 16 43 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.07 1.38 8.14 -2.38 -0.02 1.37 16 45 H 0.05 1.68 8.02 -2.39 -0.02 1.66 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 48 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 49 H 0.01 0.45 7.60 -2.39 -0.02 0.43 16 50 H 0.01 0.56 7.25 -2.39 -0.02 0.54 16 51 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -76.78 402.07 5.05 -71.73 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 0.92 Total: 9.57 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 5.94 Total: 6.17 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -4.59 Total: -117.93 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: 0.76 Total: -17.50 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -76.78 5.05 -71.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049888848.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.150 kcal (2) G-P(sol) polarization free energy of solvation -76.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds