Wall clock time and date at job start Wed Apr 1 2020 04:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30178 * 126.80435 * 2 1 4 4 O 1.20922 * 111.60963 * 180.02562 * 3 2 1 5 5 C 1.34041 * 111.56166 * 359.76273 * 4 3 2 6 6 C 1.50699 * 126.77441 * 180.28540 * 5 4 3 7 7 C 1.35446 * 106.44787 * 0.38009 * 5 4 3 8 8 C 1.50704 * 128.00394 * 179.90642 * 7 5 4 9 9 C 1.52996 * 109.47551 * 269.67933 * 8 7 5 10 10 C 1.50695 * 109.47370 * 180.02562 * 9 8 7 11 11 O 1.21288 * 119.99723 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00109 * 180.02562 * 10 9 8 13 13 C 1.46803 * 119.58125 * 359.97438 * 12 10 9 14 14 C 1.53018 * 108.20088 * 230.81596 * 13 12 10 15 15 C 1.52741 * 109.21662 * 303.50568 * 14 13 12 16 16 C 1.53016 * 110.79926 * 62.59550 * 15 14 13 17 17 H 1.09000 * 111.38720 * 68.76233 * 16 15 14 18 18 C 1.45128 * 119.57902 * 180.02562 * 12 10 9 19 19 H 1.09005 * 109.96938 * 11.90093 * 18 12 10 20 20 C 1.54417 * 112.30149 * 249.05907 * 18 12 10 21 21 C 1.54571 * 102.44486 * 203.07721 * 20 18 12 22 22 N 1.47121 * 107.25262 * 21.67532 * 21 20 18 23 23 C 1.36938 * 125.76256 * 182.63511 * 22 21 20 24 24 H 1.08005 * 119.99510 * 179.97438 * 23 22 21 25 25 C 1.38806 * 120.00509 * 359.95177 * 23 22 21 26 26 N 1.31625 * 119.99990 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00324 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47062 * 60.00020 * 27 25 23 29 29 H 1.48495 * 109.47519 * 180.02562 * 27 25 23 30 30 H 1.48505 * 109.47199 * 300.00157 * 27 25 23 31 31 H 1.09004 * 109.47071 * 269.97517 * 1 2 3 32 32 H 1.09004 * 109.46721 * 29.97267 * 1 2 3 33 33 H 1.09002 * 109.47072 * 149.97148 * 1 2 3 34 34 H 1.09002 * 109.47153 * 270.11348 * 6 5 4 35 35 H 1.09005 * 109.47252 * 30.11620 * 6 5 4 36 36 H 1.09005 * 109.46966 * 150.11290 * 6 5 4 37 37 H 1.09008 * 109.46700 * 149.67819 * 8 7 5 38 38 H 1.09000 * 109.47290 * 29.68687 * 8 7 5 39 39 H 1.09001 * 109.46565 * 60.00182 * 9 8 7 40 40 H 1.08995 * 109.47171 * 300.00283 * 9 8 7 41 41 H 1.08999 * 109.82627 * 351.60602 * 13 12 10 42 42 H 1.09003 * 109.82734 * 112.55330 * 13 12 10 43 43 H 1.09001 * 110.21382 * 182.99928 * 14 13 12 44 44 H 1.08998 * 108.28783 * 62.85532 * 14 13 12 45 45 H 1.08993 * 109.21439 * 302.25282 * 15 14 13 46 46 H 1.09001 * 109.20729 * 182.93333 * 15 14 13 47 47 H 1.09004 * 110.81163 * 321.31319 * 20 18 12 48 48 H 1.08997 * 110.81845 * 84.83906 * 20 18 12 49 49 H 1.09004 * 109.88374 * 141.08603 * 21 20 18 50 50 H 1.08998 * 109.88281 * 262.10057 * 21 20 18 51 51 H 0.96994 * 120.00039 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6024 -0.6068 0.0042 6 6 4.9021 -1.3695 0.0112 7 6 2.3540 -1.1320 -0.0006 8 6 1.9591 -2.5864 -0.0002 9 6 1.8242 -3.0787 -1.4425 10 6 1.4288 -4.5328 -1.4421 11 8 1.2700 -5.1177 -0.3915 12 7 1.2516 -5.1833 -2.6090 13 6 1.4457 -4.4662 -3.8752 14 6 0.2137 -4.7019 -4.7517 15 6 0.0098 -6.2041 -4.9388 16 6 -0.2642 -6.8865 -3.5970 17 1 -1.2359 -6.5987 -3.1957 18 6 0.8703 -6.5836 -2.5979 19 1 0.5706 -6.8798 -1.5926 20 6 2.0027 -7.5033 -3.1041 21 6 1.2297 -8.7591 -3.5676 22 7 -0.1597 -8.3473 -3.8215 23 6 -1.1831 -9.1746 -4.2002 24 1 -2.1719 -8.7712 -4.3617 25 6 -0.9497 -10.5314 -4.3769 26 7 0.2553 -11.0230 -4.1799 27 14 -2.3457 -11.6597 -4.8941 28 1 -2.8822 -11.2144 -6.2051 29 1 -1.8398 -13.0509 -5.0125 30 1 -3.4249 -11.6111 -3.8752 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8903 -0.5134 33 1 -0.3633 -0.8897 -0.5143 34 1 5.2201 -1.5549 -1.0148 35 1 5.6637 -0.7851 0.5277 36 1 4.7627 -2.3202 0.5259 37 1 1.0055 -2.7038 0.5145 38 1 2.7232 -3.1702 0.5131 39 1 2.7779 -2.9612 -1.9571 40 1 1.0601 -2.4949 -1.9557 41 1 1.5796 -3.4021 -3.6807 42 1 2.3195 -4.8611 -4.3936 43 1 0.3463 -4.2263 -5.7235 44 1 -0.6524 -4.2747 -4.2463 45 1 0.9065 -6.6351 -5.3839 46 1 -0.8363 -6.3708 -5.6054 47 1 2.5309 -7.0435 -3.9393 48 1 2.6922 -7.7492 -2.2965 49 1 1.6735 -9.1507 -4.4830 50 1 1.2569 -9.5200 -2.7877 51 1 0.4185 -11.9711 -4.3037 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049888849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:58 Heat of formation + Delta-G solvation = 41.712385 kcal Electronic energy + Delta-G solvation = -31436.672053 eV Core-core repulsion = 27339.634058 eV Total energy + Delta-G solvation = -4097.037995 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.16033 -40.41721 -38.19532 -36.06991 -35.31180 -34.04752 -32.48531 -32.43132 -31.74917 -29.12682 -28.92804 -28.40668 -27.90418 -25.74548 -24.30720 -24.13833 -22.04278 -21.64239 -20.42044 -20.17372 -19.75613 -18.14333 -17.87533 -17.45067 -16.90188 -16.83358 -15.79574 -15.63290 -14.77927 -14.72163 -14.33123 -14.26334 -14.01427 -13.82859 -13.76726 -13.56792 -13.40480 -13.20291 -13.14952 -12.90579 -12.72887 -12.54085 -12.45409 -12.20650 -12.06340 -11.92557 -11.55004 -11.38393 -11.06593 -11.01686 -10.97393 -10.79886 -10.65644 -10.52050 -10.12638 -10.12044 -10.06769 -9.67803 -9.63489 -9.57544 -9.31257 -8.63684 -8.30076 -6.88028 -5.72574 -3.06889 1.19757 1.92768 2.72098 2.84409 3.15150 3.39775 3.44283 3.45278 3.92045 4.17466 4.40695 4.47368 4.55844 4.75294 4.84083 4.92011 4.96576 5.05304 5.06681 5.09620 5.19649 5.22178 5.28064 5.29213 5.36892 5.40463 5.48604 5.48674 5.57250 5.62118 5.63435 5.69581 5.76297 5.82426 5.85159 5.97069 6.01641 6.08123 6.19212 6.27968 6.33531 6.48420 6.57107 6.71369 6.96237 7.03778 7.53016 7.56859 7.61606 7.80679 8.04020 8.21613 8.32239 9.18980 9.78697 10.44511 11.38602 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023563 B = 0.002240 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.022438 B =12495.477659 C =12775.492422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.024 3.976 3 N -0.370 5.370 4 O 0.095 5.905 5 C -0.030 4.030 6 C -0.076 4.076 7 C -0.197 4.197 8 C -0.025 4.025 9 C -0.133 4.133 10 C 0.509 3.491 11 O -0.543 6.543 12 N -0.591 5.591 13 C 0.106 3.894 14 C -0.134 4.134 15 C -0.129 4.129 16 C 0.157 3.843 17 H 0.058 0.942 18 C 0.129 3.871 19 H 0.101 0.899 20 C -0.151 4.151 21 C 0.181 3.819 22 N -0.597 5.597 23 C -0.227 4.227 24 H 0.077 0.923 25 C -0.007 4.007 26 N -0.922 5.922 27 Si 0.912 3.088 28 H -0.285 1.285 29 H -0.290 1.290 30 H -0.285 1.285 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.060 0.940 49 H 0.041 0.959 50 H 0.051 0.949 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.630 21.431 4.648 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 N -0.076 5.076 4 O 0.030 5.970 5 C -0.094 4.094 6 C -0.133 4.133 7 C -0.201 4.201 8 C -0.064 4.064 9 C -0.173 4.173 10 C 0.297 3.703 11 O -0.420 6.420 12 N -0.323 5.323 13 C -0.017 4.017 14 C -0.173 4.173 15 C -0.169 4.169 16 C 0.048 3.952 17 H 0.076 0.924 18 C 0.024 3.976 19 H 0.119 0.881 20 C -0.190 4.190 21 C 0.056 3.944 22 N -0.322 5.322 23 C -0.356 4.356 24 H 0.095 0.905 25 C -0.203 4.203 26 N -0.569 5.569 27 Si 0.742 3.258 28 H -0.212 1.212 29 H -0.216 1.216 30 H -0.212 1.212 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.111 0.889 41 H 0.100 0.900 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.079 0.921 49 H 0.059 0.941 50 H 0.070 0.930 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 7.303 22.144 5.149 23.879 hybrid contribution -0.759 -1.392 -0.529 1.672 sum 6.545 20.751 4.620 22.244 Atomic orbital electron populations 1.20194 0.85943 1.03862 1.03541 1.23488 0.98954 0.88483 1.02544 1.73841 0.89317 1.23996 1.20421 1.84795 1.21629 1.22588 1.67989 1.24289 0.98311 0.83752 1.03021 1.20377 0.89964 0.98738 1.04228 1.21006 0.91562 0.97587 1.09942 1.19620 1.03730 0.87182 0.95823 1.21660 1.03592 0.93433 0.98655 1.20580 0.77292 0.88802 0.83624 1.90704 1.51422 1.68985 1.30933 1.47615 1.67669 1.11384 1.05633 1.21733 0.99015 0.96215 0.84764 1.21845 0.97572 0.98779 0.99064 1.22104 1.02288 0.92355 1.00178 1.21310 0.95516 0.86365 0.92020 0.92374 1.21751 0.95895 0.78433 1.01480 0.88138 1.23101 0.97552 0.98489 0.99863 1.21168 0.82947 0.90830 0.99471 1.44671 1.06609 1.00734 1.80167 1.18981 0.89057 0.88517 1.39002 0.90512 1.24795 0.96873 0.96768 1.01884 1.69944 1.19236 1.12640 1.55055 0.86201 0.81161 0.79999 0.78394 1.21211 1.21623 1.21162 0.90086 0.90535 0.89827 0.89292 0.89855 0.88809 0.89592 0.89646 0.88957 0.88917 0.90002 0.91504 0.91184 0.92078 0.91855 0.92105 0.92364 0.92087 0.94083 0.93044 0.93671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.39 36.00 0.37 -0.23 16 2 C 0.02 0.25 7.33 -82.10 -0.60 -0.35 16 3 N -0.37 -4.34 12.07 33.43 0.40 -3.93 16 4 O 0.09 1.00 11.20 17.17 0.19 1.20 16 5 C -0.03 -0.26 7.49 -35.31 -0.26 -0.53 16 6 C -0.08 -0.39 10.30 36.01 0.37 -0.02 16 7 C -0.20 -1.84 5.58 -104.42 -0.58 -2.43 16 8 C -0.03 -0.24 4.83 -27.88 -0.13 -0.37 16 9 C -0.13 -1.23 4.00 -27.89 -0.11 -1.34 16 10 C 0.51 6.98 7.66 -10.99 -0.08 6.90 16 11 O -0.54 -9.53 15.31 5.55 0.08 -9.45 16 12 N -0.59 -8.36 2.77 -165.31 -0.46 -8.82 16 13 C 0.11 1.16 6.07 -3.87 -0.02 1.14 16 14 C -0.13 -1.62 6.07 -26.85 -0.16 -1.78 16 15 C -0.13 -2.16 5.13 -26.86 -0.14 -2.30 16 16 C 0.16 3.09 3.59 -66.40 -0.24 2.86 16 17 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 18 C 0.13 2.33 3.05 -67.31 -0.21 2.12 16 19 H 0.10 2.09 6.96 -51.93 -0.36 1.73 16 20 C -0.15 -2.82 6.11 -25.16 -0.15 -2.97 16 21 C 0.18 4.30 5.19 -2.88 -0.01 4.29 16 22 N -0.60 -14.69 2.91 -162.25 -0.47 -15.16 16 23 C -0.23 -6.18 10.29 -15.06 -0.16 -6.33 16 24 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 25 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 26 N -0.92 -26.72 10.33 55.49 0.57 -26.14 16 27 Si 0.91 21.91 29.55 -169.99 -5.02 16.88 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.44 7.44 -51.93 -0.39 0.06 16 37 H 0.09 0.87 8.10 -51.92 -0.42 0.45 16 38 H 0.09 0.81 7.40 -51.93 -0.38 0.43 16 39 H 0.09 0.70 7.93 -51.93 -0.41 0.29 16 40 H 0.09 0.75 7.61 -51.93 -0.40 0.35 16 41 H 0.08 0.66 5.82 -51.93 -0.30 0.35 16 42 H 0.07 0.72 7.61 -51.93 -0.40 0.33 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 1.14 7.12 -51.93 -0.37 0.77 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.06 1.00 6.92 -51.93 -0.36 0.64 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.04 1.07 7.60 -51.93 -0.39 0.68 16 50 H 0.05 1.38 7.30 -51.93 -0.38 1.00 16 51 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 399.38 15.07 6.02 6.02 Total: -1.00 -32.74 399.38 -9.24 -41.98 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -8.33 Total: -0.93 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -2.22 Total: -1.64 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: 0.05 Total: -54.06 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.28 Total: -8.25 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.74 -9.24 -41.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049888849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.688 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds