Wall clock time and date at job start Wed Apr 1 2020 04:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30178 * 126.80435 * 2 1 4 4 O 1.20922 * 111.60963 * 180.02562 * 3 2 1 5 5 C 1.34041 * 111.56166 * 359.76273 * 4 3 2 6 6 C 1.50699 * 126.77441 * 180.28540 * 5 4 3 7 7 C 1.35446 * 106.44787 * 0.38009 * 5 4 3 8 8 C 1.50704 * 128.00394 * 179.90642 * 7 5 4 9 9 C 1.52996 * 109.47551 * 269.67933 * 8 7 5 10 10 C 1.50695 * 109.47370 * 180.02562 * 9 8 7 11 11 O 1.21288 * 119.99723 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00109 * 180.02562 * 10 9 8 13 13 C 1.46803 * 119.58125 * 359.97438 * 12 10 9 14 14 C 1.53018 * 108.20088 * 230.81596 * 13 12 10 15 15 C 1.52741 * 109.21662 * 303.50568 * 14 13 12 16 16 C 1.53016 * 110.79926 * 62.59550 * 15 14 13 17 17 H 1.09000 * 111.38720 * 68.76233 * 16 15 14 18 18 C 1.45128 * 119.57902 * 180.02562 * 12 10 9 19 19 H 1.09005 * 109.96938 * 11.90093 * 18 12 10 20 20 C 1.54417 * 112.30149 * 249.05907 * 18 12 10 21 21 C 1.54571 * 102.44486 * 203.07721 * 20 18 12 22 22 N 1.47121 * 107.25262 * 21.67532 * 21 20 18 23 23 C 1.36938 * 125.76256 * 182.63511 * 22 21 20 24 24 H 1.08005 * 119.99510 * 179.97438 * 23 22 21 25 25 C 1.38806 * 120.00509 * 359.95177 * 23 22 21 26 26 N 1.31625 * 119.99990 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00324 * 180.02562 * 25 23 22 28 28 H 1.48495 * 109.47062 * 60.00020 * 27 25 23 29 29 H 1.48495 * 109.47519 * 180.02562 * 27 25 23 30 30 H 1.48505 * 109.47199 * 300.00157 * 27 25 23 31 31 H 1.09004 * 109.47071 * 269.97517 * 1 2 3 32 32 H 1.09004 * 109.46721 * 29.97267 * 1 2 3 33 33 H 1.09002 * 109.47072 * 149.97148 * 1 2 3 34 34 H 1.09002 * 109.47153 * 270.11348 * 6 5 4 35 35 H 1.09005 * 109.47252 * 30.11620 * 6 5 4 36 36 H 1.09005 * 109.46966 * 150.11290 * 6 5 4 37 37 H 1.09008 * 109.46700 * 149.67819 * 8 7 5 38 38 H 1.09000 * 109.47290 * 29.68687 * 8 7 5 39 39 H 1.09001 * 109.46565 * 60.00182 * 9 8 7 40 40 H 1.08995 * 109.47171 * 300.00283 * 9 8 7 41 41 H 1.08999 * 109.82627 * 351.60602 * 13 12 10 42 42 H 1.09003 * 109.82734 * 112.55330 * 13 12 10 43 43 H 1.09001 * 110.21382 * 182.99928 * 14 13 12 44 44 H 1.08998 * 108.28783 * 62.85532 * 14 13 12 45 45 H 1.08993 * 109.21439 * 302.25282 * 15 14 13 46 46 H 1.09001 * 109.20729 * 182.93333 * 15 14 13 47 47 H 1.09004 * 110.81163 * 321.31319 * 20 18 12 48 48 H 1.08997 * 110.81845 * 84.83906 * 20 18 12 49 49 H 1.09004 * 109.88374 * 141.08603 * 21 20 18 50 50 H 1.08998 * 109.88281 * 262.10057 * 21 20 18 51 51 H 0.96994 * 120.00039 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7254 -0.0005 5 6 3.6024 -0.6068 0.0042 6 6 4.9021 -1.3695 0.0112 7 6 2.3540 -1.1320 -0.0006 8 6 1.9591 -2.5864 -0.0002 9 6 1.8242 -3.0787 -1.4425 10 6 1.4288 -4.5328 -1.4421 11 8 1.2700 -5.1177 -0.3915 12 7 1.2516 -5.1833 -2.6090 13 6 1.4457 -4.4662 -3.8752 14 6 0.2137 -4.7019 -4.7517 15 6 0.0098 -6.2041 -4.9388 16 6 -0.2642 -6.8865 -3.5970 17 1 -1.2359 -6.5987 -3.1957 18 6 0.8703 -6.5836 -2.5979 19 1 0.5706 -6.8798 -1.5926 20 6 2.0027 -7.5033 -3.1041 21 6 1.2297 -8.7591 -3.5676 22 7 -0.1597 -8.3473 -3.8215 23 6 -1.1831 -9.1746 -4.2002 24 1 -2.1719 -8.7712 -4.3617 25 6 -0.9497 -10.5314 -4.3769 26 7 0.2553 -11.0230 -4.1799 27 14 -2.3457 -11.6597 -4.8941 28 1 -2.8822 -11.2144 -6.2051 29 1 -1.8398 -13.0509 -5.0125 30 1 -3.4249 -11.6111 -3.8752 31 1 -0.3633 -0.0004 1.0277 32 1 -0.3633 0.8903 -0.5134 33 1 -0.3633 -0.8897 -0.5143 34 1 5.2201 -1.5549 -1.0148 35 1 5.6637 -0.7851 0.5277 36 1 4.7627 -2.3202 0.5259 37 1 1.0055 -2.7038 0.5145 38 1 2.7232 -3.1702 0.5131 39 1 2.7779 -2.9612 -1.9571 40 1 1.0601 -2.4949 -1.9557 41 1 1.5796 -3.4021 -3.6807 42 1 2.3195 -4.8611 -4.3936 43 1 0.3463 -4.2263 -5.7235 44 1 -0.6524 -4.2747 -4.2463 45 1 0.9065 -6.6351 -5.3839 46 1 -0.8363 -6.3708 -5.6054 47 1 2.5309 -7.0435 -3.9393 48 1 2.6922 -7.7492 -2.2965 49 1 1.6735 -9.1507 -4.4830 50 1 1.2569 -9.5200 -2.7877 51 1 0.4185 -11.9711 -4.3037 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049888849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:57 Heat of formation + Delta-G solvation = 23.050042 kcal Electronic energy + Delta-G solvation = -31437.481313 eV Core-core repulsion = 27339.634058 eV Total energy + Delta-G solvation = -4097.847255 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.87834 -41.65402 -39.56197 -36.85579 -36.72125 -34.71614 -34.20544 -33.69026 -32.68410 -30.84741 -29.82917 -29.57200 -28.59473 -26.88572 -26.00069 -25.31973 -23.26630 -22.46842 -21.95298 -21.19322 -20.85945 -19.42271 -18.76698 -18.62841 -18.39255 -17.66603 -16.87573 -16.77240 -16.69577 -16.05323 -15.42736 -15.30233 -15.08074 -15.01121 -14.82514 -14.29657 -14.24986 -14.16649 -13.93075 -13.85215 -13.71901 -13.62886 -13.43604 -13.38095 -13.23138 -13.04160 -12.87343 -12.79219 -12.57906 -12.29351 -12.28095 -12.20879 -12.10037 -11.89872 -11.69870 -11.62503 -11.50985 -11.16433 -10.82741 -10.70748 -10.69263 -10.02177 -9.55952 -8.88927 -7.84207 -5.19965 0.53477 1.22177 1.44873 1.48112 1.54171 1.66963 2.01036 2.26391 2.50085 3.24979 3.33451 3.51288 3.56772 3.59531 3.87353 3.90143 3.96502 4.03922 4.06277 4.15085 4.18652 4.31726 4.35763 4.39302 4.45877 4.56851 4.61100 4.66187 4.67515 4.69789 4.74700 4.75844 4.84842 4.87141 4.88706 4.95116 5.00655 5.08442 5.09734 5.13008 5.20821 5.21938 5.38374 5.39844 5.41274 5.57431 5.65541 5.67593 5.74869 6.18572 6.51274 7.09100 7.23798 7.35267 7.75713 8.41024 9.25600 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023563 B = 0.002240 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.022438 B =12495.477659 C =12775.492422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.018 3.982 3 N -0.401 5.401 4 O 0.081 5.919 5 C -0.021 4.021 6 C -0.078 4.078 7 C -0.207 4.207 8 C -0.018 4.018 9 C -0.121 4.121 10 C 0.508 3.492 11 O -0.587 6.587 12 N -0.592 5.592 13 C 0.103 3.897 14 C -0.124 4.124 15 C -0.119 4.119 16 C 0.151 3.849 17 H 0.047 0.953 18 C 0.146 3.854 19 H 0.067 0.933 20 C -0.132 4.132 21 C 0.191 3.809 22 N -0.619 5.619 23 C -0.236 4.236 24 H 0.080 0.920 25 C -0.066 4.066 26 N -0.952 5.952 27 Si 0.977 3.023 28 H -0.275 1.275 29 H -0.295 1.295 30 H -0.280 1.280 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.127 0.873 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.066 0.934 45 H 0.050 0.950 46 H 0.045 0.955 47 H 0.082 0.918 48 H 0.066 0.934 49 H 0.010 0.990 50 H 0.009 0.991 51 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.259 24.225 3.649 25.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.141 4.141 3 N -0.110 5.110 4 O 0.020 5.980 5 C -0.084 4.084 6 C -0.135 4.135 7 C -0.211 4.211 8 C -0.056 4.056 9 C -0.160 4.160 10 C 0.298 3.702 11 O -0.468 6.468 12 N -0.323 5.323 13 C -0.018 4.018 14 C -0.163 4.163 15 C -0.159 4.159 16 C 0.043 3.957 17 H 0.065 0.935 18 C 0.040 3.960 19 H 0.085 0.915 20 C -0.171 4.171 21 C 0.066 3.934 22 N -0.344 5.344 23 C -0.365 4.365 24 H 0.098 0.902 25 C -0.259 4.259 26 N -0.601 5.601 27 Si 0.805 3.195 28 H -0.201 1.201 29 H -0.222 1.222 30 H -0.206 1.206 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.113 0.887 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.118 0.882 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.144 0.856 42 H 0.095 0.905 43 H 0.120 0.880 44 H 0.084 0.916 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.101 0.899 48 H 0.085 0.915 49 H 0.028 0.972 50 H 0.027 0.973 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 7.943 25.011 4.135 26.565 hybrid contribution -0.967 -2.240 -0.160 2.445 sum 6.976 22.771 3.975 24.145 Atomic orbital electron populations 1.20295 0.84679 1.04590 1.04104 1.23916 0.99976 0.88518 1.01656 1.73842 0.89880 1.25034 1.22215 1.84764 1.21355 1.23613 1.68314 1.24896 0.99460 0.83115 1.00955 1.20590 0.88600 0.98584 1.05687 1.20965 0.91772 0.97183 1.11211 1.19492 1.03045 0.87137 0.95931 1.21675 1.05611 0.89619 0.99113 1.21405 0.75917 0.90341 0.82507 1.90698 1.53170 1.70320 1.32601 1.47648 1.67540 1.09577 1.07491 1.22070 0.98616 0.98358 0.82804 1.21806 0.98555 0.94701 1.01245 1.21884 1.00968 0.95848 0.97177 1.21526 0.95811 0.84028 0.94287 0.93484 1.21173 0.94704 0.81247 0.98879 0.91512 1.22893 0.97266 0.96219 1.00715 1.20848 0.83563 0.92341 0.96662 1.44936 1.06373 1.02947 1.80099 1.19352 0.89941 0.89246 1.37994 0.90170 1.25622 0.99194 0.98306 1.02797 1.70169 1.21075 1.12277 1.56546 0.85176 0.78378 0.77588 0.78341 1.20103 1.22153 1.20607 0.89616 0.90125 0.88725 0.87384 0.88593 0.88232 0.90825 0.89976 0.85992 0.86667 0.85557 0.90484 0.87959 0.91565 0.93133 0.93638 0.89934 0.91498 0.97151 0.97315 0.94447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 10.39 71.24 0.74 -0.33 16 2 C 0.02 0.33 7.33 43.58 0.32 0.65 16 3 N -0.40 -8.85 12.07 -49.54 -0.60 -9.45 16 4 O 0.08 1.59 11.20 71.62 0.80 2.39 16 5 C -0.02 -0.31 7.49 25.04 0.19 -0.12 16 6 C -0.08 -0.54 10.30 71.24 0.73 0.19 16 7 C -0.21 -3.35 5.58 -19.74 -0.11 -3.46 16 8 C -0.02 -0.29 4.83 29.85 0.14 -0.14 16 9 C -0.12 -1.71 4.00 29.85 0.12 -1.60 16 10 C 0.51 12.62 7.66 87.66 0.67 13.29 16 11 O -0.59 -20.24 15.31 -3.05 -0.05 -20.29 16 12 N -0.59 -15.13 2.77 -795.30 -2.21 -17.34 16 13 C 0.10 1.75 6.07 86.33 0.52 2.27 16 14 C -0.12 -2.50 6.07 30.51 0.19 -2.32 16 15 C -0.12 -3.83 5.13 30.51 0.16 -3.67 16 16 C 0.15 5.99 3.59 45.07 0.16 6.15 16 17 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 18 C 0.15 5.25 3.05 46.13 0.14 5.39 16 19 H 0.07 2.87 6.96 -2.38 -0.02 2.85 16 20 C -0.13 -4.92 6.11 31.61 0.19 -4.73 16 21 C 0.19 9.55 5.19 86.80 0.45 10.00 16 22 N -0.62 -31.54 2.91 -667.23 -1.94 -33.48 16 23 C -0.24 -13.24 10.29 84.03 0.86 -12.38 16 24 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 25 C -0.07 -3.80 5.49 84.86 0.47 -3.33 16 26 N -0.95 -57.74 10.33 21.65 0.22 -57.52 16 27 Si 0.98 46.13 29.55 68.60 2.03 48.16 16 28 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 29 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 30 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 31 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 36 H 0.10 0.62 7.44 -2.38 -0.02 0.61 16 37 H 0.07 1.38 8.10 -2.38 -0.02 1.36 16 38 H 0.08 1.39 7.40 -2.39 -0.02 1.37 16 39 H 0.12 1.11 7.93 -2.39 -0.02 1.09 16 40 H 0.12 1.21 7.61 -2.39 -0.02 1.20 16 41 H 0.13 1.14 5.82 -2.39 -0.01 1.12 16 42 H 0.08 1.24 7.61 -2.39 -0.02 1.23 16 43 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.05 1.75 7.12 -2.39 -0.02 1.74 16 46 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 47 H 0.08 2.69 6.92 -2.38 -0.02 2.67 16 48 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.01 0.57 7.60 -2.39 -0.02 0.55 16 50 H 0.01 0.49 7.30 -2.39 -0.02 0.48 16 51 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -77.09 399.38 5.13 -71.95 By element: Atomic # 1 Polarization: 8.77 SS G_CDS: 0.92 Total: 9.69 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 5.95 Total: 5.88 kcal Atomic # 7 Polarization: -113.27 SS G_CDS: -4.52 Total: -117.79 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: 0.76 Total: -17.90 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Total: -77.09 5.13 -71.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049888849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.003 kcal (2) G-P(sol) polarization free energy of solvation -77.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds