Wall clock time and date at job start Wed Apr 1 2020 04:37:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 N 1.30173 * 126.80284 * 2 1
4 4 O 1.20916 * 111.60491 * 180.02562 * 3 2 1
5 5 C 1.34047 * 111.56848 * 359.76039 * 4 3 2
6 6 C 1.50694 * 126.77889 * 180.28492 * 5 4 3
7 7 C 1.35452 * 106.44397 * 0.38434 * 5 4 3
8 8 C 1.50693 * 128.00447 * 179.91187 * 7 5 4
9 9 C 1.53006 * 109.47079 * 269.67281 * 8 7 5
10 10 C 1.50705 * 109.46833 * 180.02562 * 9 8 7
11 11 O 1.21276 * 120.00209 * 0.02562 * 10 9 8
12 12 N 1.34779 * 119.99494 * 179.97438 * 10 9 8
13 13 C 1.47852 * 122.22824 * 359.97438 * 12 10 9
14 14 C 1.52717 * 111.05965 * 127.53036 * 13 12 10
15 15 C 1.53864 * 111.52099 * 48.53461 * 14 13 12
16 16 C 1.51343 * 107.27228 * 302.85162 * 15 14 13
17 17 H 1.08995 * 108.79754 * 308.77596 * 16 15 14
18 18 C 1.45727 * 122.22395 * 179.97438 * 12 10 9
19 19 H 1.09003 * 111.06577 * 118.58182 * 18 12 10
20 20 C 1.53435 * 116.36696 * 350.07991 * 18 12 10
21 21 C 1.55468 * 101.66951 * 207.27671 * 20 18 12
22 22 N 1.45025 * 119.02327 * 183.59782 * 16 15 14
23 23 C 1.36934 * 126.56132 * 29.31692 * 22 16 15
24 24 H 1.08004 * 120.00183 * 339.46788 * 23 22 16
25 25 C 1.38816 * 120.00085 * 159.46078 * 23 22 16
26 26 N 1.31622 * 120.00156 * 174.12905 * 25 23 22
27 27 Si 1.86797 * 119.99912 * 354.12057 * 25 23 22
28 28 H 1.48499 * 109.47206 * 179.97438 * 27 25 23
29 29 H 1.48495 * 109.47450 * 300.00312 * 27 25 23
30 30 H 1.48507 * 109.46807 * 60.00390 * 27 25 23
31 31 H 1.08999 * 109.46662 * 269.97185 * 1 2 3
32 32 H 1.08995 * 109.46923 * 29.97525 * 1 2 3
33 33 H 1.08998 * 109.47040 * 149.97575 * 1 2 3
34 34 H 1.09003 * 109.47334 * 270.11381 * 6 5 4
35 35 H 1.09005 * 109.47188 * 30.11474 * 6 5 4
36 36 H 1.08995 * 109.47431 * 150.11346 * 6 5 4
37 37 H 1.09004 * 109.47091 * 149.67665 * 8 7 5
38 38 H 1.08997 * 109.47332 * 29.67719 * 8 7 5
39 39 H 1.08996 * 109.46618 * 60.00393 * 9 8 7
40 40 H 1.08995 * 109.47039 * 299.99998 * 9 8 7
41 41 H 1.08998 * 109.15682 * 247.93741 * 13 12 10
42 42 H 1.09002 * 109.16146 * 7.17985 * 13 12 10
43 43 H 1.09003 * 109.06661 * 169.06337 * 14 13 12
44 44 H 1.09000 * 109.07282 * 288.07327 * 14 13 12
45 45 H 1.09004 * 109.88178 * 62.53358 * 15 14 13
46 46 H 1.09004 * 109.87978 * 183.60922 * 15 14 13
47 47 H 1.09001 * 110.98392 * 89.18279 * 20 18 12
48 48 H 1.09001 * 110.98810 * 325.37511 * 20 18 12
49 49 H 1.08999 * 109.96063 * 263.21854 * 21 20 18
50 50 H 1.09005 * 109.98956 * 141.99525 * 21 20 18
51 51 H 0.97007 * 119.99717 * 5.05068 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2869 1.0423 0.0000
4 8 3.4537 0.7253 -0.0005
5 6 3.6025 -0.6069 0.0043
6 6 4.9021 -1.3696 0.0113
7 6 2.3539 -1.1321 -0.0006
8 6 1.9591 -2.5864 -0.0001
9 6 1.8242 -3.0787 -1.4425
10 6 1.4287 -4.5330 -1.4419
11 8 1.2700 -5.1178 -0.3914
12 7 1.2505 -5.1833 -2.6089
13 6 1.4292 -4.5183 -3.9173
14 6 2.3844 -5.3090 -4.8088
15 6 2.0146 -6.8020 -4.8478
16 6 2.0273 -7.3055 -3.4206
17 1 2.9726 -7.0233 -2.9570
18 6 0.8689 -6.5885 -2.6651
19 1 -0.0915 -6.7140 -3.1652
20 6 0.9071 -7.3585 -1.3385
21 6 1.1670 -8.8118 -1.8257
22 7 1.7884 -8.7136 -3.1691
23 6 2.0854 -9.7540 -4.0084
24 1 2.2263 -9.5732 -5.0639
25 6 2.2056 -11.0412 -3.5027
26 7 2.3762 -12.0570 -4.3222
27 14 2.1255 -11.3317 -1.6592
28 1 2.2783 -12.7821 -1.3795
29 1 3.2188 -10.5805 -0.9917
30 1 0.8150 -10.8635 -1.1409
31 1 -0.3632 -0.0005 1.0277
32 1 -0.3633 0.8902 -0.5134
33 1 -0.3633 -0.8897 -0.5142
34 1 5.2201 -1.5551 -1.0147
35 1 5.6637 -0.7852 0.5277
36 1 4.7628 -2.3203 0.5259
37 1 1.0054 -2.7038 0.5146
38 1 2.7232 -3.1702 0.5131
39 1 2.7779 -2.9614 -1.9571
40 1 1.0601 -2.4950 -1.9557
41 1 0.4617 -4.4376 -4.4127
42 1 1.8342 -3.5189 -3.7584
43 1 2.3436 -4.9054 -5.8205
44 1 3.3991 -5.2043 -4.4246
45 1 1.0219 -6.9269 -5.2803
46 1 2.7487 -7.3504 -5.4382
47 1 -0.0477 -7.2863 -0.8176
48 1 1.7225 -7.0069 -0.7063
49 1 0.2251 -9.3565 -1.8907
50 1 1.8438 -9.3198 -1.1386
51 1 2.4913 -11.8995 -5.2724
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001049888850.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:37:01
Heat of formation + Delta-G solvation = 56.037178 kcal
Electronic energy + Delta-G solvation = -31729.192089 eV
Core-core repulsion = 27632.775263 eV
Total energy + Delta-G solvation = -4096.416826 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.96 seconds
Orbital eigenvalues (eV)
-45.19367 -40.57234 -38.22583 -36.10458 -35.74931 -34.08307 -32.84518 -32.53621
-31.84327 -29.46970 -28.97696 -28.75079 -28.01982 -25.82267 -24.52527 -23.66685
-22.00236 -21.63484 -21.12841 -20.35243 -19.68841 -18.91181 -17.91267 -17.41600
-17.15117 -16.40573 -16.05540 -15.87157 -15.05167 -14.74789 -14.65027 -14.41709
-14.25765 -13.99711 -13.80710 -13.60279 -13.54657 -13.43501 -13.09585 -12.92937
-12.88038 -12.70505 -12.53829 -12.34957 -12.26881 -12.25137 -11.90598 -11.59612
-11.45797 -11.11088 -11.04945 -10.82718 -10.68039 -10.59358 -10.29401 -10.12887
-10.08573 -9.48929 -9.30441 -9.08398 -9.01055 -8.67452 -8.38788 -7.04648
-6.25814 -3.29115 1.16622 1.88854 2.65436 2.80785 3.00917 3.46042
3.52186 3.72969 3.87637 4.13902 4.31162 4.50863 4.59546 4.62281
4.71519 4.85651 4.87987 4.93798 5.02064 5.04893 5.07606 5.13827
5.15693 5.20603 5.23956 5.26409 5.36162 5.39158 5.45035 5.52601
5.55666 5.59968 5.61553 5.71319 5.75850 5.78750 5.83776 5.92762
5.97418 6.05863 6.18189 6.25161 6.47429 6.50541 6.54593 6.64365
6.88383 6.98334 7.52975 7.75349 8.00560 8.24142 8.32993 9.02635
9.57897 10.26584 11.20322
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.019009 B = 0.002546 C = 0.002476
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1472.648691 B =10994.800157 C =11307.336124
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.077 4.077
2 C 0.024 3.976
3 N -0.369 5.369
4 O 0.095 5.905
5 C -0.029 4.029
6 C -0.077 4.077
7 C -0.198 4.198
8 C -0.025 4.025
9 C -0.134 4.134
10 C 0.516 3.484
11 O -0.534 6.534
12 N -0.600 5.600
13 C 0.111 3.889
14 C -0.130 4.130
15 C -0.114 4.114
16 C 0.160 3.840
17 H 0.023 0.977
18 C 0.115 3.885
19 H 0.082 0.918
20 C -0.114 4.114
21 C 0.103 3.897
22 N -0.603 5.603
23 C -0.318 4.318
24 H 0.076 0.924
25 C -0.021 4.021
26 N -0.931 5.931
27 Si 1.076 2.924
28 H -0.302 1.302
29 H -0.297 1.297
30 H -0.283 1.283
31 H 0.080 0.920
32 H 0.076 0.924
33 H 0.082 0.918
34 H 0.089 0.911
35 H 0.083 0.917
36 H 0.094 0.906
37 H 0.085 0.915
38 H 0.086 0.914
39 H 0.092 0.908
40 H 0.091 0.909
41 H 0.067 0.933
42 H 0.079 0.921
43 H 0.074 0.926
44 H 0.064 0.936
45 H 0.063 0.937
46 H 0.069 0.931
47 H 0.068 0.932
48 H 0.091 0.909
49 H 0.049 0.951
50 H 0.033 0.967
51 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.345 25.198 5.383 25.769
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C -0.135 4.135
3 N -0.075 5.075
4 O 0.030 5.970
5 C -0.092 4.092
6 C -0.134 4.134
7 C -0.202 4.202
8 C -0.063 4.063
9 C -0.174 4.174
10 C 0.305 3.695
11 O -0.412 6.412
12 N -0.333 5.333
13 C -0.012 4.012
14 C -0.169 4.169
15 C -0.152 4.152
16 C 0.051 3.949
17 H 0.041 0.959
18 C 0.011 3.989
19 H 0.100 0.900
20 C -0.152 4.152
21 C -0.021 4.021
22 N -0.329 5.329
23 C -0.445 4.445
24 H 0.094 0.906
25 C -0.220 4.220
26 N -0.573 5.573
27 Si 0.910 3.090
28 H -0.231 1.231
29 H -0.225 1.225
30 H -0.211 1.211
31 H 0.099 0.901
32 H 0.094 0.906
33 H 0.101 0.899
34 H 0.107 0.893
35 H 0.102 0.898
36 H 0.112 0.888
37 H 0.104 0.896
38 H 0.104 0.896
39 H 0.110 0.890
40 H 0.109 0.891
41 H 0.086 0.914
42 H 0.098 0.902
43 H 0.092 0.908
44 H 0.083 0.917
45 H 0.082 0.918
46 H 0.088 0.912
47 H 0.087 0.913
48 H 0.109 0.891
49 H 0.067 0.933
50 H 0.050 0.950
51 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -0.621 24.945 7.039 25.927
hybrid contribution -0.021 0.538 -1.437 1.534
sum -0.641 25.483 5.602 26.100
Atomic orbital electron populations
1.20183 0.85985 1.03779 1.03518 1.23480 0.98927 0.88502 1.02631
1.73839 0.89325 1.23995 1.20389 1.84797 1.21616 1.22606 1.67969
1.24306 0.98334 0.83724 1.02828 1.20386 0.89959 0.98760 1.04280
1.20999 0.91567 0.97569 1.10093 1.19607 1.03721 0.87226 0.95714
1.21670 1.03588 0.93408 0.98754 1.20465 0.77214 0.88646 0.83216
1.90698 1.51349 1.68241 1.30877 1.48015 1.68111 1.11651 1.05563
1.21727 1.00058 0.95908 0.83491 1.21910 0.99386 0.96332 0.99258
1.21430 1.02042 0.93455 0.98313 1.20846 0.94570 0.85960 0.93556
0.95932 1.22443 0.98668 0.78738 0.99067 0.89965 1.22686 1.03187
0.93896 0.95475 1.22628 0.96567 0.95302 0.87611 1.44357 1.71020
1.01052 1.16470 1.20091 1.47197 0.86979 0.90247 0.90620 1.25945
0.98089 0.91228 1.06774 1.70933 1.50752 1.30889 1.04694 0.83770
0.76583 0.73700 0.74970 1.23057 1.22535 1.21057 0.90094 0.90553
0.89917 0.89262 0.89807 0.88768 0.89605 0.89593 0.88986 0.89085
0.91428 0.90226 0.90753 0.91722 0.91843 0.91246 0.91280 0.89093
0.93267 0.94980 0.92991
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.55 10.39 36.01 0.37 -0.18 16
2 C 0.02 0.23 7.33 -82.10 -0.60 -0.37 16
3 N -0.37 -4.25 12.07 33.42 0.40 -3.85 16
4 O 0.09 1.00 11.20 17.16 0.19 1.19 16
5 C -0.03 -0.25 7.49 -35.31 -0.26 -0.51 16
6 C -0.08 -0.41 10.30 36.00 0.37 -0.04 16
7 C -0.20 -1.81 5.58 -104.42 -0.58 -2.39 16
8 C -0.02 -0.22 4.83 -27.88 -0.13 -0.35 16
9 C -0.13 -1.17 4.10 -27.88 -0.11 -1.29 16
10 C 0.52 6.67 7.69 -10.98 -0.08 6.58 16
11 O -0.53 -8.62 12.82 5.56 0.07 -8.55 16
12 N -0.60 -8.01 2.91 -163.80 -0.48 -8.49 16
13 C 0.11 1.11 6.32 -3.45 -0.02 1.09 16
14 C -0.13 -1.48 5.92 -26.43 -0.16 -1.64 16
15 C -0.11 -1.86 5.37 -27.12 -0.15 -2.01 16
16 C 0.16 3.12 2.60 -68.07 -0.18 2.95 16
17 H 0.02 0.48 8.05 -51.93 -0.42 0.07 16
18 C 0.12 1.95 3.33 -66.64 -0.22 1.73 16
19 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16
20 C -0.11 -2.14 5.00 -25.19 -0.13 -2.27 16
21 C 0.10 2.31 4.66 -1.72 -0.01 2.31 16
22 N -0.60 -14.61 3.21 -162.99 -0.52 -15.13 16
23 C -0.32 -8.93 10.27 -15.06 -0.15 -9.08 16
24 H 0.08 2.22 7.61 -52.48 -0.40 1.82 16
25 C -0.02 -0.61 5.50 -17.43 -0.10 -0.71 16
26 N -0.93 -29.22 13.70 55.49 0.76 -28.46 16
27 Si 1.08 27.35 24.62 -169.99 -4.19 23.16 16
28 H -0.30 -7.84 7.11 56.52 0.40 -7.43 16
29 H -0.30 -7.38 6.89 56.52 0.39 -6.99 16
30 H -0.28 -6.62 5.34 56.52 0.30 -6.31 16
31 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16
32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16
33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16
35 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16
36 H 0.09 0.47 7.43 -51.93 -0.39 0.09 16
37 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16
38 H 0.09 0.80 7.40 -51.93 -0.38 0.42 16
39 H 0.09 0.69 7.76 -51.93 -0.40 0.29 16
40 H 0.09 0.67 8.01 -51.93 -0.42 0.25 16
41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16
42 H 0.08 0.58 6.18 -51.93 -0.32 0.26 16
43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
45 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16
46 H 0.07 1.26 7.87 -51.93 -0.41 0.85 16
47 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16
48 H 0.09 1.77 6.21 -51.93 -0.32 1.45 16
49 H 0.05 1.13 6.85 -51.93 -0.36 0.78 16
50 H 0.03 0.76 4.06 -51.93 -0.21 0.55 16
51 H 0.26 8.04 8.73 -40.82 -0.36 7.68 16
LS Contribution 390.34 15.07 5.88 5.88
Total: -1.00 -34.56 390.34 -8.38 -42.94
By element:
Atomic # 1 Polarization: 5.83 SS G_CDS: -8.36 Total: -2.53 kcal
Atomic # 6 Polarization: -4.03 SS G_CDS: -2.14 Total: -6.17 kcal
Atomic # 7 Polarization: -56.09 SS G_CDS: 0.16 Total: -55.93 kcal
Atomic # 8 Polarization: -7.63 SS G_CDS: 0.26 Total: -7.36 kcal
Atomic # 14 Polarization: 27.35 SS G_CDS: -4.19 Total: 23.16 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -34.56 -8.38 -42.94 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049888850.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 98.981 kcal
(2) G-P(sol) polarization free energy of solvation -34.565 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.416 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal
(6) G-S(sol) free energy of system = (1) + (5) 56.037 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.96 seconds