Wall clock time and date at job start Wed Apr 1 2020 04:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30173 * 126.80284 * 2 1 4 4 O 1.20916 * 111.60491 * 180.02562 * 3 2 1 5 5 C 1.34047 * 111.56848 * 359.76039 * 4 3 2 6 6 C 1.50694 * 126.77889 * 180.28492 * 5 4 3 7 7 C 1.35452 * 106.44397 * 0.38434 * 5 4 3 8 8 C 1.50693 * 128.00447 * 179.91187 * 7 5 4 9 9 C 1.53006 * 109.47079 * 269.67281 * 8 7 5 10 10 C 1.50705 * 109.46833 * 180.02562 * 9 8 7 11 11 O 1.21276 * 120.00209 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99494 * 179.97438 * 10 9 8 13 13 C 1.47852 * 122.22824 * 359.97438 * 12 10 9 14 14 C 1.52717 * 111.05965 * 127.53036 * 13 12 10 15 15 C 1.53864 * 111.52099 * 48.53461 * 14 13 12 16 16 C 1.51343 * 107.27228 * 302.85162 * 15 14 13 17 17 H 1.08995 * 108.79754 * 308.77596 * 16 15 14 18 18 C 1.45727 * 122.22395 * 179.97438 * 12 10 9 19 19 H 1.09003 * 111.06577 * 118.58182 * 18 12 10 20 20 C 1.53435 * 116.36696 * 350.07991 * 18 12 10 21 21 C 1.55468 * 101.66951 * 207.27671 * 20 18 12 22 22 N 1.45025 * 119.02327 * 183.59782 * 16 15 14 23 23 C 1.36934 * 126.56132 * 29.31692 * 22 16 15 24 24 H 1.08004 * 120.00183 * 339.46788 * 23 22 16 25 25 C 1.38816 * 120.00085 * 159.46078 * 23 22 16 26 26 N 1.31622 * 120.00156 * 174.12905 * 25 23 22 27 27 Si 1.86797 * 119.99912 * 354.12057 * 25 23 22 28 28 H 1.48499 * 109.47206 * 179.97438 * 27 25 23 29 29 H 1.48495 * 109.47450 * 300.00312 * 27 25 23 30 30 H 1.48507 * 109.46807 * 60.00390 * 27 25 23 31 31 H 1.08999 * 109.46662 * 269.97185 * 1 2 3 32 32 H 1.08995 * 109.46923 * 29.97525 * 1 2 3 33 33 H 1.08998 * 109.47040 * 149.97575 * 1 2 3 34 34 H 1.09003 * 109.47334 * 270.11381 * 6 5 4 35 35 H 1.09005 * 109.47188 * 30.11474 * 6 5 4 36 36 H 1.08995 * 109.47431 * 150.11346 * 6 5 4 37 37 H 1.09004 * 109.47091 * 149.67665 * 8 7 5 38 38 H 1.08997 * 109.47332 * 29.67719 * 8 7 5 39 39 H 1.08996 * 109.46618 * 60.00393 * 9 8 7 40 40 H 1.08995 * 109.47039 * 299.99998 * 9 8 7 41 41 H 1.08998 * 109.15682 * 247.93741 * 13 12 10 42 42 H 1.09002 * 109.16146 * 7.17985 * 13 12 10 43 43 H 1.09003 * 109.06661 * 169.06337 * 14 13 12 44 44 H 1.09000 * 109.07282 * 288.07327 * 14 13 12 45 45 H 1.09004 * 109.88178 * 62.53358 * 15 14 13 46 46 H 1.09004 * 109.87978 * 183.60922 * 15 14 13 47 47 H 1.09001 * 110.98392 * 89.18279 * 20 18 12 48 48 H 1.09001 * 110.98810 * 325.37511 * 20 18 12 49 49 H 1.08999 * 109.96063 * 263.21854 * 21 20 18 50 50 H 1.09005 * 109.98956 * 141.99525 * 21 20 18 51 51 H 0.97007 * 119.99717 * 5.05068 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6025 -0.6069 0.0043 6 6 4.9021 -1.3696 0.0113 7 6 2.3539 -1.1321 -0.0006 8 6 1.9591 -2.5864 -0.0001 9 6 1.8242 -3.0787 -1.4425 10 6 1.4287 -4.5330 -1.4419 11 8 1.2700 -5.1178 -0.3914 12 7 1.2505 -5.1833 -2.6089 13 6 1.4292 -4.5183 -3.9173 14 6 2.3844 -5.3090 -4.8088 15 6 2.0146 -6.8020 -4.8478 16 6 2.0273 -7.3055 -3.4206 17 1 2.9726 -7.0233 -2.9570 18 6 0.8689 -6.5885 -2.6651 19 1 -0.0915 -6.7140 -3.1652 20 6 0.9071 -7.3585 -1.3385 21 6 1.1670 -8.8118 -1.8257 22 7 1.7884 -8.7136 -3.1691 23 6 2.0854 -9.7540 -4.0084 24 1 2.2263 -9.5732 -5.0639 25 6 2.2056 -11.0412 -3.5027 26 7 2.3762 -12.0570 -4.3222 27 14 2.1255 -11.3317 -1.6592 28 1 2.2783 -12.7821 -1.3795 29 1 3.2188 -10.5805 -0.9917 30 1 0.8150 -10.8635 -1.1409 31 1 -0.3632 -0.0005 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3633 -0.8897 -0.5142 34 1 5.2201 -1.5551 -1.0147 35 1 5.6637 -0.7852 0.5277 36 1 4.7628 -2.3203 0.5259 37 1 1.0054 -2.7038 0.5146 38 1 2.7232 -3.1702 0.5131 39 1 2.7779 -2.9614 -1.9571 40 1 1.0601 -2.4950 -1.9557 41 1 0.4617 -4.4376 -4.4127 42 1 1.8342 -3.5189 -3.7584 43 1 2.3436 -4.9054 -5.8205 44 1 3.3991 -5.2043 -4.4246 45 1 1.0219 -6.9269 -5.2803 46 1 2.7487 -7.3504 -5.4382 47 1 -0.0477 -7.2863 -0.8176 48 1 1.7225 -7.0069 -0.7063 49 1 0.2251 -9.3565 -1.8907 50 1 1.8438 -9.3198 -1.1386 51 1 2.4913 -11.8995 -5.2724 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049888850.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:01 Heat of formation + Delta-G solvation = 56.037178 kcal Electronic energy + Delta-G solvation = -31729.192089 eV Core-core repulsion = 27632.775263 eV Total energy + Delta-G solvation = -4096.416826 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -45.19367 -40.57234 -38.22583 -36.10458 -35.74931 -34.08307 -32.84518 -32.53621 -31.84327 -29.46970 -28.97696 -28.75079 -28.01982 -25.82267 -24.52527 -23.66685 -22.00236 -21.63484 -21.12841 -20.35243 -19.68841 -18.91181 -17.91267 -17.41600 -17.15117 -16.40573 -16.05540 -15.87157 -15.05167 -14.74789 -14.65027 -14.41709 -14.25765 -13.99711 -13.80710 -13.60279 -13.54657 -13.43501 -13.09585 -12.92937 -12.88038 -12.70505 -12.53829 -12.34957 -12.26881 -12.25137 -11.90598 -11.59612 -11.45797 -11.11088 -11.04945 -10.82718 -10.68039 -10.59358 -10.29401 -10.12887 -10.08573 -9.48929 -9.30441 -9.08398 -9.01055 -8.67452 -8.38788 -7.04648 -6.25814 -3.29115 1.16622 1.88854 2.65436 2.80785 3.00917 3.46042 3.52186 3.72969 3.87637 4.13902 4.31162 4.50863 4.59546 4.62281 4.71519 4.85651 4.87987 4.93798 5.02064 5.04893 5.07606 5.13827 5.15693 5.20603 5.23956 5.26409 5.36162 5.39158 5.45035 5.52601 5.55666 5.59968 5.61553 5.71319 5.75850 5.78750 5.83776 5.92762 5.97418 6.05863 6.18189 6.25161 6.47429 6.50541 6.54593 6.64365 6.88383 6.98334 7.52975 7.75349 8.00560 8.24142 8.32993 9.02635 9.57897 10.26584 11.20322 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019009 B = 0.002546 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.648691 B =10994.800157 C =11307.336124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.024 3.976 3 N -0.369 5.369 4 O 0.095 5.905 5 C -0.029 4.029 6 C -0.077 4.077 7 C -0.198 4.198 8 C -0.025 4.025 9 C -0.134 4.134 10 C 0.516 3.484 11 O -0.534 6.534 12 N -0.600 5.600 13 C 0.111 3.889 14 C -0.130 4.130 15 C -0.114 4.114 16 C 0.160 3.840 17 H 0.023 0.977 18 C 0.115 3.885 19 H 0.082 0.918 20 C -0.114 4.114 21 C 0.103 3.897 22 N -0.603 5.603 23 C -0.318 4.318 24 H 0.076 0.924 25 C -0.021 4.021 26 N -0.931 5.931 27 Si 1.076 2.924 28 H -0.302 1.302 29 H -0.297 1.297 30 H -0.283 1.283 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.091 0.909 49 H 0.049 0.951 50 H 0.033 0.967 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.345 25.198 5.383 25.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 N -0.075 5.075 4 O 0.030 5.970 5 C -0.092 4.092 6 C -0.134 4.134 7 C -0.202 4.202 8 C -0.063 4.063 9 C -0.174 4.174 10 C 0.305 3.695 11 O -0.412 6.412 12 N -0.333 5.333 13 C -0.012 4.012 14 C -0.169 4.169 15 C -0.152 4.152 16 C 0.051 3.949 17 H 0.041 0.959 18 C 0.011 3.989 19 H 0.100 0.900 20 C -0.152 4.152 21 C -0.021 4.021 22 N -0.329 5.329 23 C -0.445 4.445 24 H 0.094 0.906 25 C -0.220 4.220 26 N -0.573 5.573 27 Si 0.910 3.090 28 H -0.231 1.231 29 H -0.225 1.225 30 H -0.211 1.211 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.109 0.891 49 H 0.067 0.933 50 H 0.050 0.950 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.621 24.945 7.039 25.927 hybrid contribution -0.021 0.538 -1.437 1.534 sum -0.641 25.483 5.602 26.100 Atomic orbital electron populations 1.20183 0.85985 1.03779 1.03518 1.23480 0.98927 0.88502 1.02631 1.73839 0.89325 1.23995 1.20389 1.84797 1.21616 1.22606 1.67969 1.24306 0.98334 0.83724 1.02828 1.20386 0.89959 0.98760 1.04280 1.20999 0.91567 0.97569 1.10093 1.19607 1.03721 0.87226 0.95714 1.21670 1.03588 0.93408 0.98754 1.20465 0.77214 0.88646 0.83216 1.90698 1.51349 1.68241 1.30877 1.48015 1.68111 1.11651 1.05563 1.21727 1.00058 0.95908 0.83491 1.21910 0.99386 0.96332 0.99258 1.21430 1.02042 0.93455 0.98313 1.20846 0.94570 0.85960 0.93556 0.95932 1.22443 0.98668 0.78738 0.99067 0.89965 1.22686 1.03187 0.93896 0.95475 1.22628 0.96567 0.95302 0.87611 1.44357 1.71020 1.01052 1.16470 1.20091 1.47197 0.86979 0.90247 0.90620 1.25945 0.98089 0.91228 1.06774 1.70933 1.50752 1.30889 1.04694 0.83770 0.76583 0.73700 0.74970 1.23057 1.22535 1.21057 0.90094 0.90553 0.89917 0.89262 0.89807 0.88768 0.89605 0.89593 0.88986 0.89085 0.91428 0.90226 0.90753 0.91722 0.91843 0.91246 0.91280 0.89093 0.93267 0.94980 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.39 36.01 0.37 -0.18 16 2 C 0.02 0.23 7.33 -82.10 -0.60 -0.37 16 3 N -0.37 -4.25 12.07 33.42 0.40 -3.85 16 4 O 0.09 1.00 11.20 17.16 0.19 1.19 16 5 C -0.03 -0.25 7.49 -35.31 -0.26 -0.51 16 6 C -0.08 -0.41 10.30 36.00 0.37 -0.04 16 7 C -0.20 -1.81 5.58 -104.42 -0.58 -2.39 16 8 C -0.02 -0.22 4.83 -27.88 -0.13 -0.35 16 9 C -0.13 -1.17 4.10 -27.88 -0.11 -1.29 16 10 C 0.52 6.67 7.69 -10.98 -0.08 6.58 16 11 O -0.53 -8.62 12.82 5.56 0.07 -8.55 16 12 N -0.60 -8.01 2.91 -163.80 -0.48 -8.49 16 13 C 0.11 1.11 6.32 -3.45 -0.02 1.09 16 14 C -0.13 -1.48 5.92 -26.43 -0.16 -1.64 16 15 C -0.11 -1.86 5.37 -27.12 -0.15 -2.01 16 16 C 0.16 3.12 2.60 -68.07 -0.18 2.95 16 17 H 0.02 0.48 8.05 -51.93 -0.42 0.07 16 18 C 0.12 1.95 3.33 -66.64 -0.22 1.73 16 19 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 20 C -0.11 -2.14 5.00 -25.19 -0.13 -2.27 16 21 C 0.10 2.31 4.66 -1.72 -0.01 2.31 16 22 N -0.60 -14.61 3.21 -162.99 -0.52 -15.13 16 23 C -0.32 -8.93 10.27 -15.06 -0.15 -9.08 16 24 H 0.08 2.22 7.61 -52.48 -0.40 1.82 16 25 C -0.02 -0.61 5.50 -17.43 -0.10 -0.71 16 26 N -0.93 -29.22 13.70 55.49 0.76 -28.46 16 27 Si 1.08 27.35 24.62 -169.99 -4.19 23.16 16 28 H -0.30 -7.84 7.11 56.52 0.40 -7.43 16 29 H -0.30 -7.38 6.89 56.52 0.39 -6.99 16 30 H -0.28 -6.62 5.34 56.52 0.30 -6.31 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.47 7.43 -51.93 -0.39 0.09 16 37 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 38 H 0.09 0.80 7.40 -51.93 -0.38 0.42 16 39 H 0.09 0.69 7.76 -51.93 -0.40 0.29 16 40 H 0.09 0.67 8.01 -51.93 -0.42 0.25 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.08 0.58 6.18 -51.93 -0.32 0.26 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 46 H 0.07 1.26 7.87 -51.93 -0.41 0.85 16 47 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.09 1.77 6.21 -51.93 -0.32 1.45 16 49 H 0.05 1.13 6.85 -51.93 -0.36 0.78 16 50 H 0.03 0.76 4.06 -51.93 -0.21 0.55 16 51 H 0.26 8.04 8.73 -40.82 -0.36 7.68 16 LS Contribution 390.34 15.07 5.88 5.88 Total: -1.00 -34.56 390.34 -8.38 -42.94 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -8.36 Total: -2.53 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: -2.14 Total: -6.17 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: 0.16 Total: -55.93 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: 0.26 Total: -7.36 kcal Atomic # 14 Polarization: 27.35 SS G_CDS: -4.19 Total: 23.16 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.56 -8.38 -42.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049888850.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.981 kcal (2) G-P(sol) polarization free energy of solvation -34.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds