Wall clock time and date at job start Wed Apr 1 2020 04:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30173 * 126.80284 * 2 1 4 4 O 1.20916 * 111.60491 * 180.02562 * 3 2 1 5 5 C 1.34047 * 111.56848 * 359.76039 * 4 3 2 6 6 C 1.50694 * 126.77889 * 180.28492 * 5 4 3 7 7 C 1.35452 * 106.44397 * 0.38434 * 5 4 3 8 8 C 1.50693 * 128.00447 * 179.91187 * 7 5 4 9 9 C 1.53006 * 109.47079 * 269.67281 * 8 7 5 10 10 C 1.50705 * 109.46833 * 180.02562 * 9 8 7 11 11 O 1.21276 * 120.00209 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99494 * 179.97438 * 10 9 8 13 13 C 1.47852 * 122.22824 * 359.97438 * 12 10 9 14 14 C 1.52717 * 111.05965 * 127.53036 * 13 12 10 15 15 C 1.53864 * 111.52099 * 48.53461 * 14 13 12 16 16 C 1.51343 * 107.27228 * 302.85162 * 15 14 13 17 17 H 1.08995 * 108.79754 * 308.77596 * 16 15 14 18 18 C 1.45727 * 122.22395 * 179.97438 * 12 10 9 19 19 H 1.09003 * 111.06577 * 118.58182 * 18 12 10 20 20 C 1.53435 * 116.36696 * 350.07991 * 18 12 10 21 21 C 1.55468 * 101.66951 * 207.27671 * 20 18 12 22 22 N 1.45025 * 119.02327 * 183.59782 * 16 15 14 23 23 C 1.36934 * 126.56132 * 29.31692 * 22 16 15 24 24 H 1.08004 * 120.00183 * 339.46788 * 23 22 16 25 25 C 1.38816 * 120.00085 * 159.46078 * 23 22 16 26 26 N 1.31622 * 120.00156 * 174.12905 * 25 23 22 27 27 Si 1.86797 * 119.99912 * 354.12057 * 25 23 22 28 28 H 1.48499 * 109.47206 * 179.97438 * 27 25 23 29 29 H 1.48495 * 109.47450 * 300.00312 * 27 25 23 30 30 H 1.48507 * 109.46807 * 60.00390 * 27 25 23 31 31 H 1.08999 * 109.46662 * 269.97185 * 1 2 3 32 32 H 1.08995 * 109.46923 * 29.97525 * 1 2 3 33 33 H 1.08998 * 109.47040 * 149.97575 * 1 2 3 34 34 H 1.09003 * 109.47334 * 270.11381 * 6 5 4 35 35 H 1.09005 * 109.47188 * 30.11474 * 6 5 4 36 36 H 1.08995 * 109.47431 * 150.11346 * 6 5 4 37 37 H 1.09004 * 109.47091 * 149.67665 * 8 7 5 38 38 H 1.08997 * 109.47332 * 29.67719 * 8 7 5 39 39 H 1.08996 * 109.46618 * 60.00393 * 9 8 7 40 40 H 1.08995 * 109.47039 * 299.99998 * 9 8 7 41 41 H 1.08998 * 109.15682 * 247.93741 * 13 12 10 42 42 H 1.09002 * 109.16146 * 7.17985 * 13 12 10 43 43 H 1.09003 * 109.06661 * 169.06337 * 14 13 12 44 44 H 1.09000 * 109.07282 * 288.07327 * 14 13 12 45 45 H 1.09004 * 109.88178 * 62.53358 * 15 14 13 46 46 H 1.09004 * 109.87978 * 183.60922 * 15 14 13 47 47 H 1.09001 * 110.98392 * 89.18279 * 20 18 12 48 48 H 1.09001 * 110.98810 * 325.37511 * 20 18 12 49 49 H 1.08999 * 109.96063 * 263.21854 * 21 20 18 50 50 H 1.09005 * 109.98956 * 141.99525 * 21 20 18 51 51 H 0.97007 * 119.99717 * 5.05068 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4537 0.7253 -0.0005 5 6 3.6025 -0.6069 0.0043 6 6 4.9021 -1.3696 0.0113 7 6 2.3539 -1.1321 -0.0006 8 6 1.9591 -2.5864 -0.0001 9 6 1.8242 -3.0787 -1.4425 10 6 1.4287 -4.5330 -1.4419 11 8 1.2700 -5.1178 -0.3914 12 7 1.2505 -5.1833 -2.6089 13 6 1.4292 -4.5183 -3.9173 14 6 2.3844 -5.3090 -4.8088 15 6 2.0146 -6.8020 -4.8478 16 6 2.0273 -7.3055 -3.4206 17 1 2.9726 -7.0233 -2.9570 18 6 0.8689 -6.5885 -2.6651 19 1 -0.0915 -6.7140 -3.1652 20 6 0.9071 -7.3585 -1.3385 21 6 1.1670 -8.8118 -1.8257 22 7 1.7884 -8.7136 -3.1691 23 6 2.0854 -9.7540 -4.0084 24 1 2.2263 -9.5732 -5.0639 25 6 2.2056 -11.0412 -3.5027 26 7 2.3762 -12.0570 -4.3222 27 14 2.1255 -11.3317 -1.6592 28 1 2.2783 -12.7821 -1.3795 29 1 3.2188 -10.5805 -0.9917 30 1 0.8150 -10.8635 -1.1409 31 1 -0.3632 -0.0005 1.0277 32 1 -0.3633 0.8902 -0.5134 33 1 -0.3633 -0.8897 -0.5142 34 1 5.2201 -1.5551 -1.0147 35 1 5.6637 -0.7852 0.5277 36 1 4.7628 -2.3203 0.5259 37 1 1.0054 -2.7038 0.5146 38 1 2.7232 -3.1702 0.5131 39 1 2.7779 -2.9614 -1.9571 40 1 1.0601 -2.4950 -1.9557 41 1 0.4617 -4.4376 -4.4127 42 1 1.8342 -3.5189 -3.7584 43 1 2.3436 -4.9054 -5.8205 44 1 3.3991 -5.2043 -4.4246 45 1 1.0219 -6.9269 -5.2803 46 1 2.7487 -7.3504 -5.4382 47 1 -0.0477 -7.2863 -0.8176 48 1 1.7225 -7.0069 -0.7063 49 1 0.2251 -9.3565 -1.8907 50 1 1.8438 -9.3198 -1.1386 51 1 2.4913 -11.8995 -5.2724 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049888850.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:37:00 Heat of formation + Delta-G solvation = 34.156920 kcal Electronic energy + Delta-G solvation = -31730.140888 eV Core-core repulsion = 27632.775263 eV Total energy + Delta-G solvation = -4097.365625 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.89043 -41.75778 -39.51298 -37.09935 -36.81650 -34.77048 -34.56022 -33.88415 -32.79434 -31.10172 -30.08640 -29.58753 -28.63254 -26.76555 -26.00180 -25.14449 -23.29178 -22.72745 -22.14439 -21.36205 -20.98331 -19.94462 -19.32065 -18.63197 -17.97173 -17.41159 -17.33482 -16.92118 -16.57755 -16.06747 -15.91758 -15.59094 -15.28975 -15.13029 -14.75195 -14.55760 -14.44564 -14.28132 -14.07803 -13.95059 -13.70960 -13.57366 -13.49969 -13.47405 -13.43946 -13.20760 -13.10741 -12.88274 -12.65034 -12.39622 -12.23695 -12.08369 -11.91475 -11.75353 -11.70132 -11.53973 -11.26235 -11.16843 -10.80475 -10.70686 -10.38139 -10.01782 -9.55819 -9.12864 -8.55585 -5.53909 0.51383 1.21177 1.40270 1.47222 1.68139 1.69508 1.97472 2.23856 2.51426 3.08058 3.20651 3.25148 3.46389 3.55689 3.75578 3.85377 3.89078 3.94222 4.02414 4.06943 4.14175 4.22286 4.29594 4.34193 4.38455 4.42573 4.44566 4.56501 4.61071 4.66195 4.70708 4.71758 4.73831 4.74582 4.81894 4.86215 4.93388 4.96616 5.03336 5.07971 5.09421 5.11958 5.19125 5.23334 5.23744 5.38266 5.41438 5.54146 5.70788 6.11523 6.54312 6.79784 7.24760 7.33404 7.45713 8.13749 8.89593 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019009 B = 0.002546 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.648691 B =10994.800157 C =11307.336124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.019 3.981 3 N -0.401 5.401 4 O 0.079 5.921 5 C -0.023 4.023 6 C -0.078 4.078 7 C -0.207 4.207 8 C -0.017 4.017 9 C -0.122 4.122 10 C 0.514 3.486 11 O -0.570 6.570 12 N -0.602 5.602 13 C 0.108 3.892 14 C -0.120 4.120 15 C -0.112 4.112 16 C 0.148 3.852 17 H 0.010 0.990 18 C 0.131 3.869 19 H 0.084 0.916 20 C -0.101 4.101 21 C 0.095 3.905 22 N -0.623 5.623 23 C -0.297 4.297 24 H 0.052 0.948 25 C -0.079 4.079 26 N -0.968 5.968 27 Si 1.109 2.891 28 H -0.311 1.311 29 H -0.291 1.291 30 H -0.252 1.252 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.113 0.887 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.120 0.880 43 H 0.105 0.895 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.040 0.960 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.042 0.958 50 H 0.023 0.977 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 28.396 5.874 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.140 4.140 3 N -0.110 5.110 4 O 0.018 5.982 5 C -0.086 4.086 6 C -0.135 4.135 7 C -0.211 4.211 8 C -0.055 4.055 9 C -0.162 4.162 10 C 0.304 3.696 11 O -0.450 6.450 12 N -0.335 5.335 13 C -0.013 4.013 14 C -0.159 4.159 15 C -0.151 4.151 16 C 0.041 3.959 17 H 0.027 0.973 18 C 0.026 3.974 19 H 0.102 0.898 20 C -0.139 4.139 21 C -0.029 4.029 22 N -0.350 5.350 23 C -0.425 4.425 24 H 0.070 0.930 25 C -0.272 4.272 26 N -0.612 5.612 27 Si 0.938 3.062 28 H -0.240 1.240 29 H -0.219 1.219 30 H -0.177 1.177 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.115 0.885 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.103 0.897 42 H 0.138 0.862 43 H 0.123 0.877 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.059 0.941 47 H 0.101 0.899 48 H 0.103 0.897 49 H 0.060 0.940 50 H 0.041 0.959 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.086 28.224 7.518 29.229 hybrid contribution 0.169 -0.389 -1.634 1.688 sum -0.917 27.836 5.884 28.465 Atomic orbital electron populations 1.20301 0.84469 1.04638 1.04172 1.23946 1.00060 0.88422 1.01542 1.73840 0.89854 1.25104 1.22225 1.84765 1.21438 1.23600 1.68403 1.24873 0.99474 0.83151 1.01110 1.20568 0.88791 0.98613 1.05532 1.21002 0.91663 0.97362 1.11070 1.19491 1.03197 0.86930 0.95866 1.21658 1.05269 0.90158 0.99074 1.21184 0.76044 0.90057 0.82296 1.90684 1.52750 1.69377 1.32170 1.48113 1.68078 1.09970 1.07328 1.22017 1.00880 0.96882 0.81523 1.21882 0.99783 0.92517 1.01701 1.21425 1.01112 0.96964 0.95590 1.21101 0.95128 0.83619 0.96083 0.97265 1.22043 0.97388 0.80932 0.97056 0.89782 1.22553 1.03568 0.91502 0.96231 1.22711 0.95695 0.97984 0.86497 1.44475 1.71342 1.02386 1.16747 1.19993 1.44545 0.88142 0.89869 0.93022 1.27065 0.98771 0.91568 1.09766 1.71022 1.54107 1.31912 1.04195 0.83365 0.78305 0.73105 0.71378 1.24046 1.21910 1.17745 0.89525 0.90188 0.88525 0.87642 0.88642 0.88287 0.90290 0.90176 0.86851 0.86691 0.89698 0.86189 0.87680 0.91639 0.92171 0.94134 0.89911 0.89688 0.93955 0.95914 0.94325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.94 10.39 71.24 0.74 -0.20 16 2 C 0.02 0.34 7.33 43.58 0.32 0.65 16 3 N -0.40 -8.67 12.07 -49.56 -0.60 -9.27 16 4 O 0.08 1.55 11.20 71.57 0.80 2.35 16 5 C -0.02 -0.33 7.49 25.04 0.19 -0.15 16 6 C -0.08 -0.61 10.30 71.23 0.73 0.13 16 7 C -0.21 -3.21 5.58 -19.74 -0.11 -3.32 16 8 C -0.02 -0.25 4.83 29.85 0.14 -0.10 16 9 C -0.12 -1.58 4.10 29.85 0.12 -1.46 16 10 C 0.51 11.42 7.69 87.66 0.67 12.10 16 11 O -0.57 -17.00 12.82 -3.02 -0.04 -17.04 16 12 N -0.60 -13.87 2.91 -790.54 -2.30 -16.17 16 13 C 0.11 1.62 6.32 86.03 0.54 2.17 16 14 C -0.12 -2.31 5.92 30.79 0.18 -2.12 16 15 C -0.11 -3.56 5.37 30.34 0.16 -3.40 16 16 C 0.15 5.70 2.60 45.69 0.12 5.82 16 17 H 0.01 0.40 8.05 -2.39 -0.02 0.38 16 18 C 0.13 4.18 3.33 46.25 0.15 4.33 16 19 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 20 C -0.10 -3.60 5.00 31.59 0.16 -3.44 16 21 C 0.10 4.20 4.66 86.88 0.40 4.61 16 22 N -0.62 -30.38 3.21 -669.57 -2.15 -32.53 16 23 C -0.30 -17.15 10.27 84.03 0.86 -16.29 16 24 H 0.05 3.18 7.61 -2.91 -0.02 3.16 16 25 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 26 N -0.97 -62.97 13.70 21.65 0.30 -62.67 16 27 Si 1.11 56.08 24.62 68.60 1.69 57.77 16 28 H -0.31 -16.09 7.11 99.48 0.71 -15.38 16 29 H -0.29 -14.24 6.89 99.48 0.69 -13.55 16 30 H -0.25 -11.37 5.34 99.48 0.53 -10.84 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.10 0.71 7.43 -2.39 -0.02 0.69 16 37 H 0.08 1.29 8.10 -2.38 -0.02 1.27 16 38 H 0.08 1.29 7.40 -2.39 -0.02 1.27 16 39 H 0.11 1.06 7.76 -2.39 -0.02 1.04 16 40 H 0.11 1.03 8.01 -2.39 -0.02 1.01 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.12 0.93 6.18 -2.39 -0.01 0.92 16 43 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 44 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16 46 H 0.04 1.49 7.87 -2.38 -0.02 1.47 16 47 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 48 H 0.08 3.19 6.21 -2.39 -0.01 3.18 16 49 H 0.04 1.91 6.85 -2.39 -0.02 1.89 16 50 H 0.02 1.07 4.06 -2.38 -0.01 1.06 16 51 H 0.25 16.07 8.73 -92.70 -0.81 15.27 16 Total: -1.00 -79.32 390.34 4.26 -75.06 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 0.69 Total: 7.47 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 5.87 Total: -4.97 kcal Atomic # 7 Polarization: -115.89 SS G_CDS: -4.75 Total: -120.64 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.76 Total: -14.69 kcal Atomic # 14 Polarization: 56.08 SS G_CDS: 1.69 Total: 57.77 kcal Total: -79.32 4.26 -75.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049888850.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.214 kcal (2) G-P(sol) polarization free energy of solvation -79.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds