Wall clock time and date at job start Wed Apr 1 2020 04:37:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 N 1.30173 * 126.80284 * 2 1
4 4 O 1.20916 * 111.60491 * 180.02562 * 3 2 1
5 5 C 1.34047 * 111.56848 * 359.76039 * 4 3 2
6 6 C 1.50694 * 126.77889 * 180.28492 * 5 4 3
7 7 C 1.35452 * 106.44397 * 0.38434 * 5 4 3
8 8 C 1.50693 * 128.00447 * 179.91187 * 7 5 4
9 9 C 1.53006 * 109.47079 * 269.67281 * 8 7 5
10 10 C 1.50705 * 109.46833 * 180.02562 * 9 8 7
11 11 O 1.21276 * 120.00209 * 0.02562 * 10 9 8
12 12 N 1.34779 * 119.99494 * 179.97438 * 10 9 8
13 13 C 1.47852 * 122.22824 * 359.97438 * 12 10 9
14 14 C 1.52717 * 111.05965 * 127.53036 * 13 12 10
15 15 C 1.53864 * 111.52099 * 48.53461 * 14 13 12
16 16 C 1.51343 * 107.27228 * 302.85162 * 15 14 13
17 17 H 1.08995 * 108.79754 * 308.77596 * 16 15 14
18 18 C 1.45727 * 122.22395 * 179.97438 * 12 10 9
19 19 H 1.09003 * 111.06577 * 118.58182 * 18 12 10
20 20 C 1.53435 * 116.36696 * 350.07991 * 18 12 10
21 21 C 1.55468 * 101.66951 * 207.27671 * 20 18 12
22 22 N 1.45025 * 119.02327 * 183.59782 * 16 15 14
23 23 C 1.36934 * 126.56132 * 29.31692 * 22 16 15
24 24 H 1.08004 * 120.00183 * 339.46788 * 23 22 16
25 25 C 1.38816 * 120.00085 * 159.46078 * 23 22 16
26 26 N 1.31622 * 120.00156 * 174.12905 * 25 23 22
27 27 Si 1.86797 * 119.99912 * 354.12057 * 25 23 22
28 28 H 1.48499 * 109.47206 * 179.97438 * 27 25 23
29 29 H 1.48495 * 109.47450 * 300.00312 * 27 25 23
30 30 H 1.48507 * 109.46807 * 60.00390 * 27 25 23
31 31 H 1.08999 * 109.46662 * 269.97185 * 1 2 3
32 32 H 1.08995 * 109.46923 * 29.97525 * 1 2 3
33 33 H 1.08998 * 109.47040 * 149.97575 * 1 2 3
34 34 H 1.09003 * 109.47334 * 270.11381 * 6 5 4
35 35 H 1.09005 * 109.47188 * 30.11474 * 6 5 4
36 36 H 1.08995 * 109.47431 * 150.11346 * 6 5 4
37 37 H 1.09004 * 109.47091 * 149.67665 * 8 7 5
38 38 H 1.08997 * 109.47332 * 29.67719 * 8 7 5
39 39 H 1.08996 * 109.46618 * 60.00393 * 9 8 7
40 40 H 1.08995 * 109.47039 * 299.99998 * 9 8 7
41 41 H 1.08998 * 109.15682 * 247.93741 * 13 12 10
42 42 H 1.09002 * 109.16146 * 7.17985 * 13 12 10
43 43 H 1.09003 * 109.06661 * 169.06337 * 14 13 12
44 44 H 1.09000 * 109.07282 * 288.07327 * 14 13 12
45 45 H 1.09004 * 109.88178 * 62.53358 * 15 14 13
46 46 H 1.09004 * 109.87978 * 183.60922 * 15 14 13
47 47 H 1.09001 * 110.98392 * 89.18279 * 20 18 12
48 48 H 1.09001 * 110.98810 * 325.37511 * 20 18 12
49 49 H 1.08999 * 109.96063 * 263.21854 * 21 20 18
50 50 H 1.09005 * 109.98956 * 141.99525 * 21 20 18
51 51 H 0.97007 * 119.99717 * 5.05068 * 26 25 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2869 1.0423 0.0000
4 8 3.4537 0.7253 -0.0005
5 6 3.6025 -0.6069 0.0043
6 6 4.9021 -1.3696 0.0113
7 6 2.3539 -1.1321 -0.0006
8 6 1.9591 -2.5864 -0.0001
9 6 1.8242 -3.0787 -1.4425
10 6 1.4287 -4.5330 -1.4419
11 8 1.2700 -5.1178 -0.3914
12 7 1.2505 -5.1833 -2.6089
13 6 1.4292 -4.5183 -3.9173
14 6 2.3844 -5.3090 -4.8088
15 6 2.0146 -6.8020 -4.8478
16 6 2.0273 -7.3055 -3.4206
17 1 2.9726 -7.0233 -2.9570
18 6 0.8689 -6.5885 -2.6651
19 1 -0.0915 -6.7140 -3.1652
20 6 0.9071 -7.3585 -1.3385
21 6 1.1670 -8.8118 -1.8257
22 7 1.7884 -8.7136 -3.1691
23 6 2.0854 -9.7540 -4.0084
24 1 2.2263 -9.5732 -5.0639
25 6 2.2056 -11.0412 -3.5027
26 7 2.3762 -12.0570 -4.3222
27 14 2.1255 -11.3317 -1.6592
28 1 2.2783 -12.7821 -1.3795
29 1 3.2188 -10.5805 -0.9917
30 1 0.8150 -10.8635 -1.1409
31 1 -0.3632 -0.0005 1.0277
32 1 -0.3633 0.8902 -0.5134
33 1 -0.3633 -0.8897 -0.5142
34 1 5.2201 -1.5551 -1.0147
35 1 5.6637 -0.7852 0.5277
36 1 4.7628 -2.3203 0.5259
37 1 1.0054 -2.7038 0.5146
38 1 2.7232 -3.1702 0.5131
39 1 2.7779 -2.9614 -1.9571
40 1 1.0601 -2.4950 -1.9557
41 1 0.4617 -4.4376 -4.4127
42 1 1.8342 -3.5189 -3.7584
43 1 2.3436 -4.9054 -5.8205
44 1 3.3991 -5.2043 -4.4246
45 1 1.0219 -6.9269 -5.2803
46 1 2.7487 -7.3504 -5.4382
47 1 -0.0477 -7.2863 -0.8176
48 1 1.7225 -7.0069 -0.7063
49 1 0.2251 -9.3565 -1.8907
50 1 1.8438 -9.3198 -1.1386
51 1 2.4913 -11.8995 -5.2724
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001049888850.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:37:00
Heat of formation + Delta-G solvation = 34.156920 kcal
Electronic energy + Delta-G solvation = -31730.140888 eV
Core-core repulsion = 27632.775263 eV
Total energy + Delta-G solvation = -4097.365625 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-45.89043 -41.75778 -39.51298 -37.09935 -36.81650 -34.77048 -34.56022 -33.88415
-32.79434 -31.10172 -30.08640 -29.58753 -28.63254 -26.76555 -26.00180 -25.14449
-23.29178 -22.72745 -22.14439 -21.36205 -20.98331 -19.94462 -19.32065 -18.63197
-17.97173 -17.41159 -17.33482 -16.92118 -16.57755 -16.06747 -15.91758 -15.59094
-15.28975 -15.13029 -14.75195 -14.55760 -14.44564 -14.28132 -14.07803 -13.95059
-13.70960 -13.57366 -13.49969 -13.47405 -13.43946 -13.20760 -13.10741 -12.88274
-12.65034 -12.39622 -12.23695 -12.08369 -11.91475 -11.75353 -11.70132 -11.53973
-11.26235 -11.16843 -10.80475 -10.70686 -10.38139 -10.01782 -9.55819 -9.12864
-8.55585 -5.53909 0.51383 1.21177 1.40270 1.47222 1.68139 1.69508
1.97472 2.23856 2.51426 3.08058 3.20651 3.25148 3.46389 3.55689
3.75578 3.85377 3.89078 3.94222 4.02414 4.06943 4.14175 4.22286
4.29594 4.34193 4.38455 4.42573 4.44566 4.56501 4.61071 4.66195
4.70708 4.71758 4.73831 4.74582 4.81894 4.86215 4.93388 4.96616
5.03336 5.07971 5.09421 5.11958 5.19125 5.23334 5.23744 5.38266
5.41438 5.54146 5.70788 6.11523 6.54312 6.79784 7.24760 7.33404
7.45713 8.13749 8.89593
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.019009 B = 0.002546 C = 0.002476
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1472.648691 B =10994.800157 C =11307.336124
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.019 3.981
3 N -0.401 5.401
4 O 0.079 5.921
5 C -0.023 4.023
6 C -0.078 4.078
7 C -0.207 4.207
8 C -0.017 4.017
9 C -0.122 4.122
10 C 0.514 3.486
11 O -0.570 6.570
12 N -0.602 5.602
13 C 0.108 3.892
14 C -0.120 4.120
15 C -0.112 4.112
16 C 0.148 3.852
17 H 0.010 0.990
18 C 0.131 3.869
19 H 0.084 0.916
20 C -0.101 4.101
21 C 0.095 3.905
22 N -0.623 5.623
23 C -0.297 4.297
24 H 0.052 0.948
25 C -0.079 4.079
26 N -0.968 5.968
27 Si 1.109 2.891
28 H -0.311 1.311
29 H -0.291 1.291
30 H -0.252 1.252
31 H 0.086 0.914
32 H 0.079 0.921
33 H 0.096 0.904
34 H 0.105 0.895
35 H 0.095 0.905
36 H 0.099 0.901
37 H 0.078 0.922
38 H 0.080 0.920
39 H 0.113 0.887
40 H 0.115 0.885
41 H 0.085 0.915
42 H 0.120 0.880
43 H 0.105 0.895
44 H 0.065 0.935
45 H 0.060 0.940
46 H 0.040 0.960
47 H 0.082 0.918
48 H 0.085 0.915
49 H 0.042 0.958
50 H 0.023 0.977
51 H 0.248 0.752
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.816 28.396 5.874 29.009
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.140 4.140
3 N -0.110 5.110
4 O 0.018 5.982
5 C -0.086 4.086
6 C -0.135 4.135
7 C -0.211 4.211
8 C -0.055 4.055
9 C -0.162 4.162
10 C 0.304 3.696
11 O -0.450 6.450
12 N -0.335 5.335
13 C -0.013 4.013
14 C -0.159 4.159
15 C -0.151 4.151
16 C 0.041 3.959
17 H 0.027 0.973
18 C 0.026 3.974
19 H 0.102 0.898
20 C -0.139 4.139
21 C -0.029 4.029
22 N -0.350 5.350
23 C -0.425 4.425
24 H 0.070 0.930
25 C -0.272 4.272
26 N -0.612 5.612
27 Si 0.938 3.062
28 H -0.240 1.240
29 H -0.219 1.219
30 H -0.177 1.177
31 H 0.105 0.895
32 H 0.098 0.902
33 H 0.115 0.885
34 H 0.124 0.876
35 H 0.114 0.886
36 H 0.117 0.883
37 H 0.097 0.903
38 H 0.098 0.902
39 H 0.131 0.869
40 H 0.133 0.867
41 H 0.103 0.897
42 H 0.138 0.862
43 H 0.123 0.877
44 H 0.084 0.916
45 H 0.078 0.922
46 H 0.059 0.941
47 H 0.101 0.899
48 H 0.103 0.897
49 H 0.060 0.940
50 H 0.041 0.959
51 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges -1.086 28.224 7.518 29.229
hybrid contribution 0.169 -0.389 -1.634 1.688
sum -0.917 27.836 5.884 28.465
Atomic orbital electron populations
1.20301 0.84469 1.04638 1.04172 1.23946 1.00060 0.88422 1.01542
1.73840 0.89854 1.25104 1.22225 1.84765 1.21438 1.23600 1.68403
1.24873 0.99474 0.83151 1.01110 1.20568 0.88791 0.98613 1.05532
1.21002 0.91663 0.97362 1.11070 1.19491 1.03197 0.86930 0.95866
1.21658 1.05269 0.90158 0.99074 1.21184 0.76044 0.90057 0.82296
1.90684 1.52750 1.69377 1.32170 1.48113 1.68078 1.09970 1.07328
1.22017 1.00880 0.96882 0.81523 1.21882 0.99783 0.92517 1.01701
1.21425 1.01112 0.96964 0.95590 1.21101 0.95128 0.83619 0.96083
0.97265 1.22043 0.97388 0.80932 0.97056 0.89782 1.22553 1.03568
0.91502 0.96231 1.22711 0.95695 0.97984 0.86497 1.44475 1.71342
1.02386 1.16747 1.19993 1.44545 0.88142 0.89869 0.93022 1.27065
0.98771 0.91568 1.09766 1.71022 1.54107 1.31912 1.04195 0.83365
0.78305 0.73105 0.71378 1.24046 1.21910 1.17745 0.89525 0.90188
0.88525 0.87642 0.88642 0.88287 0.90290 0.90176 0.86851 0.86691
0.89698 0.86189 0.87680 0.91639 0.92171 0.94134 0.89911 0.89688
0.93955 0.95914 0.94325
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.94 10.39 71.24 0.74 -0.20 16
2 C 0.02 0.34 7.33 43.58 0.32 0.65 16
3 N -0.40 -8.67 12.07 -49.56 -0.60 -9.27 16
4 O 0.08 1.55 11.20 71.57 0.80 2.35 16
5 C -0.02 -0.33 7.49 25.04 0.19 -0.15 16
6 C -0.08 -0.61 10.30 71.23 0.73 0.13 16
7 C -0.21 -3.21 5.58 -19.74 -0.11 -3.32 16
8 C -0.02 -0.25 4.83 29.85 0.14 -0.10 16
9 C -0.12 -1.58 4.10 29.85 0.12 -1.46 16
10 C 0.51 11.42 7.69 87.66 0.67 12.10 16
11 O -0.57 -17.00 12.82 -3.02 -0.04 -17.04 16
12 N -0.60 -13.87 2.91 -790.54 -2.30 -16.17 16
13 C 0.11 1.62 6.32 86.03 0.54 2.17 16
14 C -0.12 -2.31 5.92 30.79 0.18 -2.12 16
15 C -0.11 -3.56 5.37 30.34 0.16 -3.40 16
16 C 0.15 5.70 2.60 45.69 0.12 5.82 16
17 H 0.01 0.40 8.05 -2.39 -0.02 0.38 16
18 C 0.13 4.18 3.33 46.25 0.15 4.33 16
19 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16
20 C -0.10 -3.60 5.00 31.59 0.16 -3.44 16
21 C 0.10 4.20 4.66 86.88 0.40 4.61 16
22 N -0.62 -30.38 3.21 -669.57 -2.15 -32.53 16
23 C -0.30 -17.15 10.27 84.03 0.86 -16.29 16
24 H 0.05 3.18 7.61 -2.91 -0.02 3.16 16
25 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16
26 N -0.97 -62.97 13.70 21.65 0.30 -62.67 16
27 Si 1.11 56.08 24.62 68.60 1.69 57.77 16
28 H -0.31 -16.09 7.11 99.48 0.71 -15.38 16
29 H -0.29 -14.24 6.89 99.48 0.69 -13.55 16
30 H -0.25 -11.37 5.34 99.48 0.53 -10.84 16
31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16
32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16
33 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16
34 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16
35 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16
36 H 0.10 0.71 7.43 -2.39 -0.02 0.69 16
37 H 0.08 1.29 8.10 -2.38 -0.02 1.27 16
38 H 0.08 1.29 7.40 -2.39 -0.02 1.27 16
39 H 0.11 1.06 7.76 -2.39 -0.02 1.04 16
40 H 0.11 1.03 8.01 -2.39 -0.02 1.01 16
41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16
42 H 0.12 0.93 6.18 -2.39 -0.01 0.92 16
43 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16
44 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16
45 H 0.06 1.92 8.12 -2.39 -0.02 1.90 16
46 H 0.04 1.49 7.87 -2.38 -0.02 1.47 16
47 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16
48 H 0.08 3.19 6.21 -2.39 -0.01 3.18 16
49 H 0.04 1.91 6.85 -2.39 -0.02 1.89 16
50 H 0.02 1.07 4.06 -2.38 -0.01 1.06 16
51 H 0.25 16.07 8.73 -92.70 -0.81 15.27 16
Total: -1.00 -79.32 390.34 4.26 -75.06
By element:
Atomic # 1 Polarization: 6.78 SS G_CDS: 0.69 Total: 7.47 kcal
Atomic # 6 Polarization: -10.83 SS G_CDS: 5.87 Total: -4.97 kcal
Atomic # 7 Polarization: -115.89 SS G_CDS: -4.75 Total: -120.64 kcal
Atomic # 8 Polarization: -15.45 SS G_CDS: 0.76 Total: -14.69 kcal
Atomic # 14 Polarization: 56.08 SS G_CDS: 1.69 Total: 57.77 kcal
Total: -79.32 4.26 -75.06 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001049888850.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 109.214 kcal
(2) G-P(sol) polarization free energy of solvation -79.315 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.899 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.258 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.057 kcal
(6) G-S(sol) free energy of system = (1) + (5) 34.157 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds