Wall clock time and date at job start Wed Apr 1 2020 04:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30166 * 126.79790 * 2 1 4 4 O 1.20925 * 111.60469 * 180.02562 * 3 2 1 5 5 C 1.34042 * 111.56518 * 359.75926 * 4 3 2 6 6 C 1.50696 * 126.77767 * 180.29052 * 5 4 3 7 7 C 1.35455 * 106.44401 * 0.38238 * 5 4 3 8 8 C 1.50697 * 128.00227 * 179.91087 * 7 5 4 9 9 H 1.09004 * 109.46839 * 180.66431 * 8 7 5 10 10 C 1.52998 * 109.47468 * 60.66369 * 8 7 5 11 11 C 1.50698 * 109.47185 * 300.65964 * 8 7 5 12 12 O 1.21276 * 120.00240 * 18.56199 * 11 8 7 13 13 N 1.34783 * 119.99896 * 198.56304 * 11 8 7 14 14 C 1.44503 * 116.65253 * 354.06534 * 13 11 8 15 15 C 1.51612 * 112.72362 * 154.40678 * 14 13 11 16 16 C 1.52178 * 111.87748 * 42.68246 * 15 14 13 17 17 C 1.50766 * 112.98186 * 304.12208 * 16 15 14 18 18 H 1.09001 * 108.56620 * 170.11834 * 17 16 15 19 19 C 1.53899 * 110.59349 * 289.76774 * 17 16 15 20 20 N 1.46828 * 107.49841 * 140.15809 * 19 17 16 21 21 C 1.36934 * 125.37576 * 180.77751 * 20 19 17 22 22 H 1.08000 * 119.99736 * 359.97438 * 21 20 19 23 23 C 1.38814 * 120.00149 * 179.97438 * 21 20 19 24 24 N 1.31618 * 119.99747 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00173 * 179.97438 * 23 21 20 26 26 H 1.48509 * 109.47062 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47308 * 119.99801 * 25 23 21 28 28 H 1.48498 * 109.47206 * 240.00526 * 25 23 21 29 29 C 1.46907 * 109.24801 * 1.03843 * 20 19 17 30 30 C 1.44115 * 116.65316 * 174.04354 * 13 11 8 31 31 H 1.09006 * 109.35227 * 74.45171 * 30 13 11 32 32 H 1.08994 * 109.47455 * 269.97030 * 1 2 3 33 33 H 1.08996 * 109.47536 * 29.97910 * 1 2 3 34 34 H 1.09008 * 109.46955 * 149.97958 * 1 2 3 35 35 H 1.09000 * 109.47031 * 271.25586 * 6 5 4 36 36 H 1.09003 * 109.47209 * 31.25796 * 6 5 4 37 37 H 1.09003 * 109.47587 * 151.25926 * 6 5 4 38 38 H 1.09001 * 109.46640 * 305.61983 * 10 8 7 39 39 H 1.08997 * 109.47025 * 65.61493 * 10 8 7 40 40 H 1.08997 * 109.47359 * 185.62321 * 10 8 7 41 41 H 1.09000 * 108.83192 * 275.24029 * 14 13 11 42 42 H 1.08994 * 108.83579 * 33.56719 * 14 13 11 43 43 H 1.09007 * 108.96197 * 163.03033 * 15 14 13 44 44 H 1.09002 * 108.96047 * 281.69232 * 15 14 13 45 45 H 1.09005 * 108.37807 * 183.61767 * 16 15 14 46 46 H 1.09001 * 109.49216 * 65.40032 * 16 15 14 47 47 H 1.08996 * 109.84374 * 20.66960 * 19 17 16 48 48 H 1.08996 * 109.84376 * 259.64056 * 19 17 16 49 49 H 0.97000 * 119.99784 * 179.97438 * 24 23 21 50 50 H 1.08993 * 110.08468 * 101.31290 * 29 20 19 51 51 H 1.08998 * 110.08252 * 222.88679 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2867 1.0423 0.0000 4 8 3.4537 0.7254 -0.0005 5 6 3.6024 -0.6067 0.0043 6 6 4.9021 -1.3694 0.0114 7 6 2.3539 -1.1320 -0.0005 8 6 1.9591 -2.5864 0.0000 9 1 0.8723 -2.6678 -0.0167 10 6 2.5018 -3.2617 1.2611 11 6 2.5324 -3.2629 -1.2185 12 8 3.4503 -2.7491 -1.8219 13 7 2.0248 -4.4391 -1.6376 14 6 1.0245 -5.0512 -0.7933 15 6 0.0922 -5.9683 -1.5603 16 6 0.8446 -6.8340 -2.5605 17 6 1.6702 -6.0291 -3.5318 18 1 2.3087 -6.7113 -4.0932 19 6 0.7616 -5.2677 -4.5133 20 7 1.3476 -3.9367 -4.7155 21 6 0.8243 -2.9527 -5.5112 22 1 -0.0934 -3.1275 -6.0531 23 6 1.4734 -1.7306 -5.6211 24 7 2.5915 -1.5175 -4.9602 25 14 0.7599 -0.3885 -6.7070 26 1 -0.4935 -0.8757 -7.3372 27 1 0.4663 0.8113 -5.8828 28 1 1.7400 -0.0346 -7.7650 29 6 2.5872 -3.8295 -3.9344 30 6 2.5352 -4.9567 -2.8820 31 1 3.5398 -5.3495 -2.7250 32 1 -0.3634 -0.0005 1.0276 33 1 -0.3634 0.8901 -0.5135 34 1 -0.3633 -0.8899 -0.5142 35 1 5.2306 -1.5372 -1.0143 36 1 5.6582 -0.7939 0.5455 37 1 4.7578 -2.3289 0.5082 38 1 3.5767 -3.0942 1.3289 39 1 2.0122 -2.8395 2.1386 40 1 2.3032 -4.3324 1.2140 41 1 1.5255 -5.6286 -0.0163 42 1 0.4350 -4.2659 -0.3202 43 1 -0.4264 -6.6170 -0.8543 44 1 -0.6439 -5.3630 -2.0893 45 1 0.1177 -7.4207 -3.1224 46 1 1.5033 -7.5185 -2.0259 47 1 -0.2392 -5.1714 -4.0924 48 1 0.7154 -5.7999 -5.4635 49 1 3.0452 -0.6636 -5.0374 50 1 3.4518 -3.9637 -4.5843 51 1 2.6359 -2.8588 -3.4411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050161401.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:01 Heat of formation + Delta-G solvation = 68.866436 kcal Electronic energy + Delta-G solvation = -34002.308353 eV Core-core repulsion = 29906.447845 eV Total energy + Delta-G solvation = -4095.860507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.53719 -40.62909 -37.97404 -35.58971 -35.17298 -33.56291 -33.22155 -32.01036 -31.27129 -29.54405 -28.39360 -27.55738 -27.16472 -25.61852 -24.74882 -23.81814 -22.40638 -21.73670 -20.49088 -20.02774 -18.82690 -17.86892 -17.31590 -17.11033 -16.69679 -16.16622 -15.87525 -15.29268 -14.70559 -14.36161 -14.29868 -14.04435 -13.87054 -13.68693 -13.51215 -13.27808 -13.08952 -12.85988 -12.80849 -12.62978 -12.38647 -12.22126 -12.10674 -12.02217 -11.87190 -11.60253 -11.44306 -11.09906 -11.00434 -10.92534 -10.76472 -10.61263 -10.49529 -10.25227 -10.19385 -9.99789 -9.84333 -9.57173 -9.53076 -8.92533 -8.68569 -8.39993 -7.83361 -6.67313 -5.50701 -2.93049 1.87691 2.50973 3.19387 3.43815 3.45357 3.49700 3.53573 3.58684 4.45588 4.57584 4.66838 4.79759 4.82753 4.88697 4.96139 5.11284 5.18547 5.21338 5.30528 5.34042 5.39168 5.53872 5.57466 5.62464 5.63728 5.64757 5.71810 5.76660 5.81516 5.85718 5.92630 5.94673 5.99114 6.01179 6.07073 6.10702 6.14688 6.23111 6.26617 6.36632 6.47746 6.51965 6.64752 6.74720 6.81830 7.18004 7.62747 7.77044 7.85954 8.17319 8.59655 8.65691 8.83675 9.34496 9.96512 10.59716 11.50958 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008324 B = 0.006152 C = 0.004255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3363.034240 B = 4550.271099 C = 6579.070245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.030 3.970 3 N -0.374 5.374 4 O 0.089 5.911 5 C 0.011 3.989 6 C -0.069 4.069 7 C -0.190 4.190 8 C -0.030 4.030 9 H 0.100 0.900 10 C -0.146 4.146 11 C 0.506 3.494 12 O -0.492 6.492 13 N -0.585 5.585 14 C 0.115 3.885 15 C -0.128 4.128 16 C -0.101 4.101 17 C -0.101 4.101 18 H 0.075 0.925 19 C 0.141 3.859 20 N -0.602 5.602 21 C -0.232 4.232 22 H 0.074 0.926 23 C -0.005 4.005 24 N -0.902 5.902 25 Si 0.904 3.096 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.291 1.291 29 C 0.137 3.863 30 C 0.133 3.867 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.021 0.979 48 H 0.017 0.983 49 H 0.250 0.750 50 H 0.017 0.983 51 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.436 -8.430 15.891 18.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.129 4.129 3 N -0.082 5.082 4 O 0.027 5.973 5 C -0.053 4.053 6 C -0.126 4.126 7 C -0.194 4.194 8 C -0.052 4.052 9 H 0.118 0.882 10 C -0.203 4.203 11 C 0.292 3.708 12 O -0.366 6.366 13 N -0.319 5.319 14 C -0.009 4.009 15 C -0.166 4.166 16 C -0.139 4.139 17 C -0.120 4.120 18 H 0.093 0.907 19 C 0.015 3.985 20 N -0.328 5.328 21 C -0.361 4.361 22 H 0.092 0.908 23 C -0.202 4.202 24 N -0.548 5.548 25 Si 0.735 3.265 26 H -0.207 1.207 27 H -0.219 1.219 28 H -0.218 1.218 29 C 0.012 3.988 30 C 0.029 3.971 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.123 0.877 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.076 0.924 47 H 0.038 0.962 48 H 0.035 0.965 49 H 0.061 0.939 50 H 0.035 0.965 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.087 -6.668 15.459 16.871 hybrid contribution -0.677 -0.217 -0.908 1.153 sum -1.764 -6.885 14.551 16.194 Atomic orbital electron populations 1.20133 0.86453 1.04035 1.02562 1.23280 0.98586 0.88607 1.02446 1.73766 0.89301 1.23910 1.21186 1.84742 1.21600 1.22772 1.68234 1.24099 0.98258 0.83153 0.99756 1.20475 0.89431 0.97433 1.05308 1.20146 0.91926 0.95412 1.11911 1.19541 1.01656 0.89108 0.94937 0.88186 1.21905 1.02235 1.00548 0.95619 1.20289 0.84148 0.80817 0.85535 1.90708 1.27881 1.63327 1.54690 1.46563 1.40763 1.22326 1.22263 1.20864 0.90494 0.96837 0.92708 1.21267 0.98505 0.98285 0.98559 1.20684 0.98776 0.97536 0.96918 1.21273 0.97578 0.96364 0.96824 0.90653 1.21272 0.94849 0.87532 0.94841 1.44337 1.25106 1.09546 1.53837 1.18976 1.05579 0.91650 1.19865 0.90826 1.24804 0.97381 0.97777 1.00248 1.69916 1.17475 1.23304 1.44146 0.86169 0.78046 0.82398 0.79907 1.20655 1.21888 1.21786 1.22423 0.87295 0.99527 0.89507 1.21213 0.94657 0.96716 0.84494 0.92483 0.90563 0.90606 0.90132 0.87702 0.91211 0.89616 0.91446 0.91516 0.91353 0.92903 0.91040 0.91053 0.91058 0.91763 0.92418 0.96153 0.96482 0.93889 0.96472 0.84102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.26 36.01 0.37 -0.66 16 2 C 0.03 0.52 7.33 -82.11 -0.60 -0.08 16 3 N -0.37 -7.08 12.07 33.42 0.40 -6.67 16 4 O 0.09 1.62 11.20 17.17 0.19 1.81 16 5 C 0.01 0.18 6.86 -35.30 -0.24 -0.06 16 6 C -0.07 -0.94 8.79 36.00 0.32 -0.63 16 7 C -0.19 -3.16 4.75 -104.42 -0.50 -3.65 16 8 C -0.03 -0.43 2.15 -92.93 -0.20 -0.63 16 9 H 0.10 1.31 5.52 -51.93 -0.29 1.02 16 10 C -0.15 -1.50 8.96 37.16 0.33 -1.16 16 11 C 0.51 9.05 6.01 -10.98 -0.07 8.99 16 12 O -0.49 -10.65 10.27 5.56 0.06 -10.59 16 13 N -0.59 -9.75 3.08 -169.84 -0.52 -10.27 16 14 C 0.11 1.40 5.00 -5.81 -0.03 1.37 16 15 C -0.13 -1.50 5.85 -27.85 -0.16 -1.66 16 16 C -0.10 -1.27 5.17 -28.27 -0.15 -1.42 16 17 C -0.10 -1.70 2.96 -91.61 -0.27 -1.97 16 18 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 19 C 0.14 2.95 6.73 -3.40 -0.02 2.93 16 20 N -0.60 -15.74 3.39 -171.30 -0.58 -16.32 16 21 C -0.23 -6.68 10.25 -15.06 -0.15 -6.84 16 22 H 0.07 2.06 7.83 -52.49 -0.41 1.65 16 23 C 0.00 -0.15 5.48 -17.43 -0.10 -0.24 16 24 N -0.90 -27.70 10.18 55.49 0.56 -27.14 16 25 Si 0.90 23.20 29.55 -169.99 -5.02 18.18 16 26 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 28 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 29 C 0.14 3.47 4.63 -3.14 -0.01 3.45 16 30 C 0.13 2.56 3.23 -68.86 -0.22 2.34 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 1.08 7.54 -51.92 -0.39 0.69 16 35 H 0.10 1.67 7.12 -51.93 -0.37 1.30 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.02 5.28 -51.93 -0.27 0.75 16 38 H 0.07 0.69 5.23 -51.93 -0.27 0.42 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.60 6.01 -51.93 -0.31 0.29 16 41 H 0.05 0.52 7.00 -51.93 -0.36 0.16 16 42 H 0.07 0.79 5.57 -51.93 -0.29 0.50 16 43 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 44 H 0.07 0.97 7.06 -51.93 -0.37 0.60 16 45 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.02 0.42 6.65 -51.93 -0.35 0.08 16 48 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.25 7.65 8.31 -40.82 -0.34 7.31 16 50 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.14 3.93 3.03 -51.93 -0.16 3.77 16 LS Contribution 377.13 15.07 5.68 5.68 Total: -1.00 -35.33 377.13 -8.55 -43.88 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -7.62 Total: 1.38 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -1.71 Total: 0.05 kcal Atomic # 7 Polarization: -60.27 SS G_CDS: -0.14 Total: -60.40 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: 0.25 Total: -8.78 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -5.02 Total: 18.18 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.33 -8.55 -43.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050161401.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.751 kcal (2) G-P(sol) polarization free energy of solvation -35.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds