Wall clock time and date at job start Wed Apr 1 2020 04:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30008 * 127.33648 * 2 1 4 4 O 1.20656 * 112.30041 * 179.67683 * 3 2 1 5 5 C 1.33486 * 113.15822 * 0.50435 * 4 3 2 6 6 C 1.50701 * 126.83485 * 179.77733 * 5 4 3 7 7 C 1.53008 * 109.46615 * 59.68461 * 6 5 4 8 8 C 1.53001 * 109.47147 * 299.69166 * 6 5 4 9 9 C 1.37366 * 106.33991 * 359.51723 * 5 4 3 10 10 C 1.47398 * 128.56168 * 180.24329 * 9 5 4 11 11 O 1.21609 * 120.00430 * 90.00574 * 10 9 5 12 12 N 1.34781 * 119.99822 * 269.99355 * 10 9 5 13 13 C 1.47169 * 136.00136 * 359.63769 * 12 10 9 14 14 C 1.52636 * 87.96924 * 206.71790 * 13 12 10 15 15 C 1.47163 * 135.99924 * 180.02562 * 12 10 9 16 16 C 1.52551 * 113.89726 * 88.17817 * 14 13 12 17 17 C 1.53352 * 109.13372 * 190.30526 * 16 14 13 18 18 N 1.46891 * 108.74897 * 307.75392 * 17 16 14 19 19 C 1.36932 * 120.46411 * 235.60407 * 18 17 16 20 20 H 1.08003 * 120.00068 * 28.47084 * 19 18 17 21 21 C 1.38810 * 119.99987 * 208.46804 * 19 18 17 22 22 N 1.31626 * 120.00262 * 17.64685 * 21 19 18 23 23 Si 1.86800 * 120.00252 * 197.64906 * 21 19 18 24 24 H 1.48500 * 109.47029 * 89.99587 * 23 21 19 25 25 H 1.48497 * 109.47207 * 210.00057 * 23 21 19 26 26 H 1.48501 * 109.46829 * 329.99935 * 23 21 19 27 27 C 1.46891 * 119.07076 * 55.62541 * 18 17 16 28 28 C 1.52557 * 114.25996 * 220.76399 * 14 13 12 29 29 H 1.08998 * 109.47707 * 270.03254 * 1 2 3 30 30 H 1.09003 * 109.47030 * 30.02818 * 1 2 3 31 31 H 1.08998 * 109.47335 * 150.02809 * 1 2 3 32 32 H 1.08992 * 109.47327 * 179.68217 * 6 5 4 33 33 H 1.09001 * 109.46919 * 300.00099 * 7 6 5 34 34 H 1.08997 * 109.46865 * 60.00789 * 7 6 5 35 35 H 1.08996 * 109.46759 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.46698 * 299.99607 * 8 6 5 37 37 H 1.08997 * 109.47300 * 59.98805 * 8 6 5 38 38 H 1.08996 * 109.47331 * 179.97438 * 8 6 5 39 39 H 1.08998 * 113.48569 * 321.41744 * 13 12 10 40 40 H 1.09001 * 113.48495 * 91.91679 * 13 12 10 41 41 H 1.08995 * 113.48779 * 268.08753 * 15 12 10 42 42 H 1.09001 * 113.48720 * 38.59307 * 15 12 10 43 43 H 1.09001 * 109.52489 * 310.19917 * 16 14 13 44 44 H 1.09002 * 109.52973 * 70.40280 * 16 14 13 45 45 H 1.08993 * 109.59547 * 187.97700 * 17 16 14 46 46 H 1.09000 * 109.59504 * 67.52902 * 17 16 14 47 47 H 0.96992 * 120.00547 * 179.97438 * 22 21 19 48 48 H 1.09004 * 109.58943 * 184.59127 * 27 18 17 49 49 H 1.09000 * 109.59783 * 64.14591 * 27 18 17 50 50 H 1.09000 * 109.52887 * 289.75407 * 28 14 13 51 51 H 1.08999 * 109.53062 * 49.96850 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 0.0063 5 6 3.6494 -0.6008 0.0009 6 6 4.9711 -1.3247 0.0014 7 6 5.7645 -0.9367 1.2509 8 6 5.7653 -0.9374 -1.2476 9 6 2.3991 -1.1696 0.0006 10 6 2.0401 -2.5992 0.0005 11 8 1.8916 -3.1890 1.0536 12 7 1.8760 -3.2527 -1.1668 13 6 1.9566 -2.9058 -2.5947 14 6 0.9716 -4.0389 -2.8699 15 6 1.5310 -4.6246 -1.5726 16 6 -0.4926 -3.6197 -2.7824 17 6 -1.3770 -4.8721 -2.8186 18 7 -1.0014 -5.6817 -3.9852 19 6 -1.9415 -6.0374 -4.9151 20 1 -2.8012 -5.4056 -5.0828 21 6 -1.7894 -7.2100 -5.6424 22 7 -0.9621 -8.1431 -5.2212 23 14 -2.7588 -7.4637 -7.2188 24 1 -1.9783 -6.9418 -8.3693 25 1 -3.0178 -8.9130 -7.4129 26 1 -4.0511 -6.7378 -7.1275 27 6 0.3967 -6.1049 -4.1401 28 6 1.2938 -4.8614 -4.1137 29 1 -0.3634 0.0006 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3634 -0.8902 -0.5134 32 1 4.7962 -2.4005 0.0018 33 1 5.9395 0.1392 1.2506 34 1 5.1988 -1.2127 2.1407 35 1 6.7207 -1.4599 1.2511 36 1 5.2001 -1.2138 -2.1377 37 1 5.9402 0.1385 -1.2479 38 1 6.7215 -1.4606 -1.2470 39 1 1.5561 -1.9186 -2.8251 40 1 2.9430 -3.0729 -3.0274 41 1 2.4004 -5.2644 -1.7241 42 1 0.7717 -5.0863 -0.9414 43 1 -0.6622 -3.0808 -1.8502 44 1 -0.7383 -2.9756 -3.6267 45 1 -2.4235 -4.5784 -2.8993 46 1 -1.2270 -5.4519 -1.9078 47 1 -0.8562 -8.9626 -5.7291 48 1 0.5185 -6.6233 -5.0912 49 1 0.6701 -6.7703 -3.3211 50 1 1.1108 -4.2611 -5.0049 51 1 2.3397 -5.1671 -4.0875 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050551242.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:14 Heat of formation + Delta-G solvation = 73.198599 kcal Electronic energy + Delta-G solvation = -31973.468805 eV Core-core repulsion = 27877.796155 eV Total energy + Delta-G solvation = -4095.672651 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.06521 -40.84188 -38.40950 -36.38812 -35.95153 -34.72428 -32.55509 -31.31743 -30.61592 -29.80386 -28.97316 -27.60526 -27.42404 -26.28487 -24.52789 -23.73971 -23.21535 -22.43187 -21.03248 -20.04723 -19.22089 -18.09278 -17.92964 -17.57783 -16.71693 -16.39620 -16.06285 -15.76988 -15.31919 -14.89746 -14.44689 -14.08572 -13.80641 -13.74336 -13.62567 -13.58501 -13.48398 -13.35902 -13.11054 -13.01998 -12.70684 -12.61804 -12.39643 -11.97802 -11.85988 -11.70891 -11.70394 -11.63429 -11.47739 -11.15435 -11.12091 -10.77819 -10.53453 -10.43776 -10.23347 -10.10071 -10.05353 -9.87354 -9.68150 -9.59821 -9.46780 -8.70194 -8.49635 -6.70844 -5.83074 -3.25891 1.10495 1.72318 2.32519 2.53967 2.95588 3.35092 3.42731 3.43514 3.85951 3.93361 4.33191 4.45434 4.46816 4.50477 4.59849 4.65510 4.89090 4.98583 5.12938 5.15227 5.21196 5.27708 5.31451 5.34592 5.38146 5.41668 5.43659 5.44658 5.46223 5.52290 5.59160 5.59511 5.74556 5.79677 5.80903 5.83996 5.86186 6.01031 6.01974 6.20778 6.39345 6.50992 6.54830 6.59338 6.75816 6.90456 7.27488 7.59372 7.66410 7.76408 8.02751 8.03072 8.41719 9.17558 9.80652 10.36786 11.25083 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019342 B = 0.002623 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.261527 B =10673.144321 C =11179.054324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.056 3.944 3 N -0.357 5.357 4 O 0.098 5.902 5 C 0.022 3.978 6 C -0.015 4.015 7 C -0.149 4.149 8 C -0.149 4.149 9 C -0.237 4.237 10 C 0.623 3.377 11 O -0.530 6.530 12 N -0.631 5.631 13 C 0.102 3.898 14 C -0.074 4.074 15 C 0.116 3.884 16 C -0.106 4.106 17 C 0.147 3.853 18 N -0.590 5.590 19 C -0.253 4.253 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.171 3.829 28 C -0.124 4.124 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.050 0.950 44 H 0.065 0.935 45 H 0.056 0.944 46 H 0.019 0.981 47 H 0.254 0.746 48 H 0.091 0.909 49 H 0.019 0.981 50 H 0.063 0.937 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.827 15.002 7.994 21.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 N -0.064 5.064 4 O 0.037 5.963 5 C -0.041 4.041 6 C -0.035 4.035 7 C -0.206 4.206 8 C -0.206 4.206 9 C -0.244 4.244 10 C 0.411 3.589 11 O -0.407 6.407 12 N -0.365 5.365 13 C -0.021 4.021 14 C -0.075 4.075 15 C -0.006 4.006 16 C -0.146 4.146 17 C 0.021 3.979 18 N -0.313 5.313 19 C -0.383 4.383 20 H 0.083 0.917 21 C -0.195 4.195 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.045 3.955 28 C -0.164 4.164 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.119 0.881 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.037 0.963 47 H 0.064 0.936 48 H 0.109 0.891 49 H 0.037 0.963 50 H 0.082 0.918 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 12.595 15.943 8.701 22.102 hybrid contribution -0.509 -0.923 -0.774 1.308 sum 12.086 15.019 7.926 20.844 Atomic orbital electron populations 1.20243 0.85043 1.04317 1.03966 1.24752 0.98628 0.86446 1.00772 1.73611 0.89123 1.23298 1.20343 1.84491 1.21448 1.22437 1.67935 1.24581 0.96763 0.83733 0.99045 1.19899 0.87021 0.98601 0.97976 1.21880 1.00081 1.02533 0.96147 1.21886 1.00103 1.02635 0.95963 1.21879 0.92730 0.95154 1.14605 1.16289 0.76842 0.83612 0.82195 1.90832 1.51322 1.68196 1.30336 1.49607 1.67887 1.13872 1.05108 1.23238 1.00034 1.00279 0.78561 1.21640 0.95496 0.94867 0.95465 1.23152 0.99514 0.83779 0.94137 1.21726 0.92655 0.99774 1.00405 1.20881 0.96211 0.90365 0.90490 1.44023 1.04475 1.60326 1.22438 1.19191 1.03906 1.02150 1.13041 0.91713 1.25037 0.99328 0.94835 1.00339 1.70025 1.40001 1.06488 1.38061 0.86307 0.79743 0.76940 0.83885 1.21441 1.21793 1.20458 1.20793 0.82025 0.90712 1.01958 1.22078 0.99501 0.99705 0.95105 0.89578 0.89840 0.89652 0.88101 0.91574 0.91864 0.90940 0.91918 0.91541 0.90909 0.90895 0.89713 0.89561 0.89988 0.93084 0.91638 0.92587 0.96343 0.93601 0.89133 0.96299 0.91819 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.49 36.01 0.38 -0.44 16 2 C 0.06 0.72 7.59 -79.77 -0.61 0.12 16 3 N -0.36 -4.68 12.01 34.78 0.42 -4.26 16 4 O 0.10 1.18 11.06 18.67 0.21 1.38 16 5 C 0.02 0.25 6.06 -34.63 -0.21 0.04 16 6 C -0.02 -0.13 3.33 -91.77 -0.31 -0.44 16 7 C -0.15 -1.06 9.18 37.16 0.34 -0.72 16 8 C -0.15 -0.99 9.18 37.16 0.34 -0.65 16 9 C -0.24 -3.16 6.06 -102.89 -0.62 -3.78 16 10 C 0.62 9.47 7.55 -12.53 -0.09 9.38 16 11 O -0.53 -9.92 17.88 5.27 0.09 -9.83 16 12 N -0.63 -8.73 3.46 -186.62 -0.65 -9.37 16 13 C 0.10 1.23 7.54 -8.37 -0.06 1.16 16 14 C -0.07 -1.07 0.83 -155.18 -0.13 -1.20 16 15 C 0.12 1.68 7.56 -8.21 -0.06 1.62 16 16 C -0.11 -1.68 5.25 -26.78 -0.14 -1.83 16 17 C 0.15 2.90 6.41 -3.65 -0.02 2.87 16 18 N -0.59 -13.81 2.96 -172.18 -0.51 -14.32 16 19 C -0.25 -6.64 9.56 -15.06 -0.14 -6.78 16 20 H 0.07 1.68 7.89 -52.48 -0.41 1.27 16 21 C 0.00 0.09 4.89 -17.43 -0.09 0.00 16 22 N -0.90 -25.16 11.21 55.49 0.62 -24.54 16 23 Si 0.90 21.01 29.59 -169.99 -5.03 15.98 16 24 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 C 0.17 3.70 5.27 -3.64 -0.02 3.68 16 28 C -0.12 -2.02 5.31 -26.77 -0.14 -2.16 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.10 0.94 7.70 -51.93 -0.40 0.54 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 40 H 0.08 0.87 8.09 -51.93 -0.42 0.45 16 41 H 0.09 1.15 8.06 -51.93 -0.42 0.74 16 42 H 0.08 1.33 7.53 -51.93 -0.39 0.94 16 43 H 0.05 0.75 7.95 -51.93 -0.41 0.34 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.06 1.10 7.92 -51.93 -0.41 0.69 16 46 H 0.02 0.38 7.59 -51.93 -0.39 -0.02 16 47 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 48 H 0.09 2.24 5.97 -51.93 -0.31 1.93 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 LS Contribution 412.46 15.07 6.22 6.22 Total: -1.00 -31.08 412.46 -8.84 -39.92 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -8.62 Total: -2.07 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -1.59 Total: 0.89 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.12 Total: -52.49 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.30 Total: -8.44 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.03 Total: 15.98 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.08 -8.84 -39.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050551242.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.115 kcal (2) G-P(sol) polarization free energy of solvation -31.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds