Wall clock time and date at job start Wed Apr 1 2020 04:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30008 * 127.33648 * 2 1 4 4 O 1.20656 * 112.30041 * 179.67683 * 3 2 1 5 5 C 1.33486 * 113.15822 * 0.50435 * 4 3 2 6 6 C 1.50701 * 126.83485 * 179.77733 * 5 4 3 7 7 C 1.53008 * 109.46615 * 59.68461 * 6 5 4 8 8 C 1.53001 * 109.47147 * 299.69166 * 6 5 4 9 9 C 1.37366 * 106.33991 * 359.51723 * 5 4 3 10 10 C 1.47398 * 128.56168 * 180.24329 * 9 5 4 11 11 O 1.21609 * 120.00430 * 90.00574 * 10 9 5 12 12 N 1.34781 * 119.99822 * 269.99355 * 10 9 5 13 13 C 1.47169 * 136.00136 * 359.63769 * 12 10 9 14 14 C 1.52636 * 87.96924 * 206.71790 * 13 12 10 15 15 C 1.47163 * 135.99924 * 180.02562 * 12 10 9 16 16 C 1.52551 * 113.89726 * 88.17817 * 14 13 12 17 17 C 1.53352 * 109.13372 * 190.30526 * 16 14 13 18 18 N 1.46891 * 108.74897 * 307.75392 * 17 16 14 19 19 C 1.36932 * 120.46411 * 235.60407 * 18 17 16 20 20 H 1.08003 * 120.00068 * 28.47084 * 19 18 17 21 21 C 1.38810 * 119.99987 * 208.46804 * 19 18 17 22 22 N 1.31626 * 120.00262 * 17.64685 * 21 19 18 23 23 Si 1.86800 * 120.00252 * 197.64906 * 21 19 18 24 24 H 1.48500 * 109.47029 * 89.99587 * 23 21 19 25 25 H 1.48497 * 109.47207 * 210.00057 * 23 21 19 26 26 H 1.48501 * 109.46829 * 329.99935 * 23 21 19 27 27 C 1.46891 * 119.07076 * 55.62541 * 18 17 16 28 28 C 1.52557 * 114.25996 * 220.76399 * 14 13 12 29 29 H 1.08998 * 109.47707 * 270.03254 * 1 2 3 30 30 H 1.09003 * 109.47030 * 30.02818 * 1 2 3 31 31 H 1.08998 * 109.47335 * 150.02809 * 1 2 3 32 32 H 1.08992 * 109.47327 * 179.68217 * 6 5 4 33 33 H 1.09001 * 109.46919 * 300.00099 * 7 6 5 34 34 H 1.08997 * 109.46865 * 60.00789 * 7 6 5 35 35 H 1.08996 * 109.46759 * 180.02562 * 7 6 5 36 36 H 1.09003 * 109.46698 * 299.99607 * 8 6 5 37 37 H 1.08997 * 109.47300 * 59.98805 * 8 6 5 38 38 H 1.08996 * 109.47331 * 179.97438 * 8 6 5 39 39 H 1.08998 * 113.48569 * 321.41744 * 13 12 10 40 40 H 1.09001 * 113.48495 * 91.91679 * 13 12 10 41 41 H 1.08995 * 113.48779 * 268.08753 * 15 12 10 42 42 H 1.09001 * 113.48720 * 38.59307 * 15 12 10 43 43 H 1.09001 * 109.52489 * 310.19917 * 16 14 13 44 44 H 1.09002 * 109.52973 * 70.40280 * 16 14 13 45 45 H 1.08993 * 109.59547 * 187.97700 * 17 16 14 46 46 H 1.09000 * 109.59504 * 67.52902 * 17 16 14 47 47 H 0.96992 * 120.00547 * 179.97438 * 22 21 19 48 48 H 1.09004 * 109.58943 * 184.59127 * 27 18 17 49 49 H 1.09000 * 109.59783 * 64.14591 * 27 18 17 50 50 H 1.09000 * 109.52887 * 289.75407 * 28 14 13 51 51 H 1.08999 * 109.53062 * 49.96850 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 0.0063 5 6 3.6494 -0.6008 0.0009 6 6 4.9711 -1.3247 0.0014 7 6 5.7645 -0.9367 1.2509 8 6 5.7653 -0.9374 -1.2476 9 6 2.3991 -1.1696 0.0006 10 6 2.0401 -2.5992 0.0005 11 8 1.8916 -3.1890 1.0536 12 7 1.8760 -3.2527 -1.1668 13 6 1.9566 -2.9058 -2.5947 14 6 0.9716 -4.0389 -2.8699 15 6 1.5310 -4.6246 -1.5726 16 6 -0.4926 -3.6197 -2.7824 17 6 -1.3770 -4.8721 -2.8186 18 7 -1.0014 -5.6817 -3.9852 19 6 -1.9415 -6.0374 -4.9151 20 1 -2.8012 -5.4056 -5.0828 21 6 -1.7894 -7.2100 -5.6424 22 7 -0.9621 -8.1431 -5.2212 23 14 -2.7588 -7.4637 -7.2188 24 1 -1.9783 -6.9418 -8.3693 25 1 -3.0178 -8.9130 -7.4129 26 1 -4.0511 -6.7378 -7.1275 27 6 0.3967 -6.1049 -4.1401 28 6 1.2938 -4.8614 -4.1137 29 1 -0.3634 0.0006 1.0276 30 1 -0.3633 0.8898 -0.5143 31 1 -0.3634 -0.8902 -0.5134 32 1 4.7962 -2.4005 0.0018 33 1 5.9395 0.1392 1.2506 34 1 5.1988 -1.2127 2.1407 35 1 6.7207 -1.4599 1.2511 36 1 5.2001 -1.2138 -2.1377 37 1 5.9402 0.1385 -1.2479 38 1 6.7215 -1.4606 -1.2470 39 1 1.5561 -1.9186 -2.8251 40 1 2.9430 -3.0729 -3.0274 41 1 2.4004 -5.2644 -1.7241 42 1 0.7717 -5.0863 -0.9414 43 1 -0.6622 -3.0808 -1.8502 44 1 -0.7383 -2.9756 -3.6267 45 1 -2.4235 -4.5784 -2.8993 46 1 -1.2270 -5.4519 -1.9078 47 1 -0.8562 -8.9626 -5.7291 48 1 0.5185 -6.6233 -5.0912 49 1 0.6701 -6.7703 -3.3211 50 1 1.1108 -4.2611 -5.0049 51 1 2.3397 -5.1671 -4.0875 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050551242.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:13 Heat of formation + Delta-G solvation = 56.637988 kcal Electronic energy + Delta-G solvation = -31974.186927 eV Core-core repulsion = 27877.796155 eV Total energy + Delta-G solvation = -4096.390773 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -46.00616 -42.04278 -39.67913 -37.56984 -37.07670 -35.66766 -34.27228 -32.48540 -31.93205 -31.35816 -29.85860 -28.82539 -28.11779 -27.43373 -26.09580 -24.94871 -23.96481 -23.93087 -22.58808 -21.10382 -20.19474 -19.54712 -18.88984 -18.62404 -18.25630 -17.58273 -17.05698 -16.87058 -16.78158 -16.26557 -15.67674 -15.34900 -15.20073 -14.98468 -14.87144 -14.58565 -14.43479 -14.28244 -14.16540 -13.98372 -13.90735 -13.83884 -13.38014 -13.08143 -13.06746 -12.94078 -12.88603 -12.61347 -12.56218 -12.37393 -12.27586 -12.24195 -12.04027 -11.88445 -11.79973 -11.59665 -11.29177 -11.20672 -11.01121 -10.96746 -10.53014 -10.47151 -9.85695 -8.62308 -7.83890 -5.29078 0.20087 0.76108 1.18987 1.49319 1.50895 1.53913 1.58990 1.97471 2.54130 2.94452 3.08754 3.22399 3.34430 3.44307 3.68914 3.71234 3.83582 3.91281 3.99571 4.01793 4.11365 4.23555 4.33013 4.38691 4.46697 4.49970 4.51194 4.57043 4.61708 4.65058 4.70784 4.74849 4.75671 4.80002 4.85623 4.89737 4.93568 5.01727 5.04677 5.05418 5.12856 5.20545 5.26062 5.31339 5.34713 5.37890 5.57141 5.69553 5.84327 6.43959 6.53822 6.86685 7.10779 7.20081 7.91366 8.41631 9.21483 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019342 B = 0.002623 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.261527 B =10673.144321 C =11179.054324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.052 3.948 3 N -0.371 5.371 4 O 0.099 5.901 5 C 0.041 3.959 6 C -0.018 4.018 7 C -0.147 4.147 8 C -0.144 4.144 9 C -0.264 4.264 10 C 0.629 3.371 11 O -0.574 6.574 12 N -0.626 5.626 13 C 0.118 3.882 14 C -0.074 4.074 15 C 0.113 3.887 16 C -0.093 4.093 17 C 0.145 3.855 18 N -0.608 5.608 19 C -0.260 4.260 20 H 0.063 0.937 21 C -0.047 4.047 22 N -0.932 5.932 23 Si 0.962 3.038 24 H -0.283 1.283 25 H -0.298 1.298 26 H -0.272 1.272 27 C 0.175 3.825 28 C -0.107 4.107 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.115 0.885 41 H 0.102 0.898 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.007 0.993 47 H 0.249 0.751 48 H 0.056 0.944 49 H -0.002 1.002 50 H 0.065 0.935 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.479 17.078 7.284 23.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 N -0.079 5.079 4 O 0.039 5.961 5 C -0.023 4.023 6 C -0.037 4.037 7 C -0.204 4.204 8 C -0.202 4.202 9 C -0.271 4.271 10 C 0.417 3.583 11 O -0.454 6.454 12 N -0.359 5.359 13 C -0.004 4.004 14 C -0.075 4.075 15 C -0.009 4.009 16 C -0.132 4.132 17 C 0.019 3.981 18 N -0.331 5.331 19 C -0.391 4.391 20 H 0.081 0.919 21 C -0.243 4.243 22 N -0.578 5.578 23 Si 0.791 3.209 24 H -0.210 1.210 25 H -0.225 1.225 26 H -0.197 1.197 27 C 0.050 3.950 28 C -0.147 4.147 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.101 0.899 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.133 0.867 41 H 0.120 0.880 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.025 0.975 47 H 0.059 0.941 48 H 0.074 0.926 49 H 0.016 0.984 50 H 0.083 0.917 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 14.257 18.061 7.975 24.353 hybrid contribution -1.043 -1.600 -0.486 1.970 sum 13.214 16.461 7.490 22.398 Atomic orbital electron populations 1.20332 0.83798 1.04928 1.04553 1.25097 0.99570 0.86149 1.00221 1.73603 0.89473 1.23576 1.21259 1.84478 1.21134 1.22649 1.67797 1.25089 0.97322 0.83359 0.96511 1.20094 0.86090 0.97789 0.99731 1.21893 1.00572 1.03275 0.94702 1.21890 1.00541 1.03200 0.94526 1.21760 0.93859 0.94254 1.17263 1.16436 0.75997 0.84124 0.81707 1.90806 1.53429 1.69303 1.31911 1.49590 1.67059 1.13506 1.05742 1.23252 1.00597 0.99593 0.76954 1.21498 0.95319 0.96166 0.94537 1.23180 0.99656 0.84432 0.93647 1.21530 0.92795 0.97623 1.01230 1.20967 0.96998 0.91414 0.88727 1.44291 1.04908 1.60726 1.23169 1.19482 1.04253 1.01913 1.13431 0.91897 1.25720 1.00726 0.94774 1.03072 1.70172 1.41728 1.06808 1.39119 0.85343 0.78778 0.76239 0.80535 1.20980 1.22492 1.19689 1.20637 0.82437 0.92761 0.99198 1.21836 0.99724 0.97121 0.95972 0.89008 0.88275 0.89905 0.88816 0.90885 0.93405 0.88811 0.92082 0.91083 0.88991 0.89592 0.86682 0.87969 0.92319 0.91829 0.91133 0.93123 0.97511 0.94141 0.92564 0.98399 0.91671 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 10.49 71.24 0.75 -0.78 16 2 C 0.05 1.25 7.59 45.16 0.34 1.59 16 3 N -0.37 -9.14 12.01 -44.80 -0.54 -9.68 16 4 O 0.10 2.20 11.06 77.05 0.85 3.05 16 5 C 0.04 0.86 6.06 25.48 0.15 1.01 16 6 C -0.02 -0.26 3.33 -11.54 -0.04 -0.30 16 7 C -0.15 -1.78 9.18 71.98 0.66 -1.12 16 8 C -0.14 -1.44 9.18 71.98 0.66 -0.78 16 9 C -0.26 -6.68 6.06 -18.74 -0.11 -6.79 16 10 C 0.63 18.49 7.55 86.65 0.65 19.14 16 11 O -0.57 -21.60 17.88 -4.06 -0.07 -21.67 16 12 N -0.63 -16.14 3.46 -862.60 -2.99 -19.13 16 13 C 0.12 2.42 7.54 83.21 0.63 3.05 16 14 C -0.07 -2.00 0.83 -52.62 -0.04 -2.04 16 15 C 0.11 3.14 7.56 83.32 0.63 3.77 16 16 C -0.09 -2.81 5.25 30.56 0.16 -2.65 16 17 C 0.14 5.74 6.41 86.42 0.55 6.29 16 18 N -0.61 -28.82 2.96 -698.64 -2.07 -30.89 16 19 C -0.26 -13.82 9.56 84.03 0.80 -13.02 16 20 H 0.06 3.29 7.89 -2.91 -0.02 3.27 16 21 C -0.05 -2.56 4.89 84.86 0.42 -2.15 16 22 N -0.93 -53.45 11.21 21.65 0.24 -53.21 16 23 Si 0.96 43.68 29.59 68.60 2.03 45.71 16 24 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 25 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 C 0.18 7.67 5.27 86.43 0.46 8.13 16 28 C -0.11 -3.28 5.31 30.57 0.16 -3.12 16 29 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.09 1.56 7.70 -2.39 -0.02 1.54 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.07 0.66 8.14 -2.39 -0.02 0.65 16 38 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.09 1.64 8.10 -2.39 -0.02 1.62 16 40 H 0.12 1.79 8.09 -2.39 -0.02 1.77 16 41 H 0.10 2.54 8.06 -2.39 -0.02 2.52 16 42 H 0.06 1.92 7.53 -2.39 -0.02 1.90 16 43 H 0.06 1.78 7.95 -2.39 -0.02 1.76 16 44 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.05 2.01 7.92 -2.39 -0.02 1.99 16 46 H 0.01 0.29 7.59 -2.39 -0.02 0.27 16 47 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 48 H 0.06 2.85 5.97 -2.38 -0.01 2.84 16 49 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 50 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 51 H 0.08 2.09 8.09 -2.39 -0.02 2.07 16 Total: -1.00 -69.33 412.46 5.20 -64.13 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.91 Total: 11.44 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 6.83 Total: 10.24 kcal Atomic # 7 Polarization: -107.56 SS G_CDS: -5.35 Total: -112.90 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: 0.78 Total: -18.62 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -69.33 5.20 -64.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050551242.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.764 kcal (2) G-P(sol) polarization free energy of solvation -69.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds