Wall clock time and date at job start Wed Apr 1 2020 04:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30168 * 126.80211 * 2 1 4 4 O 1.20921 * 111.60452 * 179.97438 * 3 2 1 5 5 C 1.34040 * 111.56854 * 359.76383 * 4 3 2 6 6 C 1.50692 * 126.77880 * 180.28740 * 5 4 3 7 7 C 1.35455 * 106.44245 * 0.37865 * 5 4 3 8 8 C 1.50695 * 128.00514 * 179.91433 * 7 5 4 9 9 H 1.09000 * 109.47505 * 182.88235 * 8 7 5 10 10 C 1.53000 * 109.47488 * 62.88170 * 8 7 5 11 11 C 1.50700 * 109.47164 * 302.88222 * 8 7 5 12 12 O 1.21277 * 119.99933 * 5.97073 * 11 8 7 13 13 N 1.34776 * 120.00118 * 185.97282 * 11 8 7 14 14 C 1.47167 * 136.00234 * 174.34701 * 13 11 8 15 15 C 1.52646 * 87.97174 * 206.71960 * 14 13 11 16 16 C 1.47168 * 136.00061 * 354.71076 * 13 11 8 17 17 C 1.52551 * 113.89601 * 88.17213 * 15 14 13 18 18 C 1.53356 * 109.12832 * 190.30707 * 17 15 14 19 19 N 1.46886 * 108.75186 * 307.75777 * 18 17 15 20 20 C 1.36936 * 120.46054 * 235.60781 * 19 18 17 21 21 H 1.07996 * 120.00588 * 31.11700 * 20 19 18 22 22 C 1.38815 * 119.99512 * 211.11603 * 20 19 18 23 23 N 1.31621 * 120.00263 * 13.20728 * 22 20 19 24 24 Si 1.86806 * 119.99875 * 193.20792 * 22 20 19 25 25 H 1.48499 * 109.47327 * 60.00043 * 24 22 20 26 26 H 1.48503 * 109.47048 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46837 * 299.99693 * 24 22 20 28 28 C 1.46886 * 119.07447 * 55.62167 * 19 18 17 29 29 C 1.52559 * 114.25901 * 220.76207 * 15 14 13 30 30 H 1.09003 * 109.46952 * 270.02896 * 1 2 3 31 31 H 1.08996 * 109.46987 * 30.02393 * 1 2 3 32 32 H 1.08995 * 109.47088 * 150.02616 * 1 2 3 33 33 H 1.09003 * 109.47363 * 275.11361 * 6 5 4 34 34 H 1.09000 * 109.47419 * 35.11186 * 6 5 4 35 35 H 1.09001 * 109.47598 * 155.11617 * 6 5 4 36 36 H 1.09002 * 109.47047 * 303.14060 * 10 8 7 37 37 H 1.09001 * 109.46864 * 63.13597 * 10 8 7 38 38 H 1.08995 * 109.47452 * 183.14021 * 10 8 7 39 39 H 1.09003 * 113.48937 * 321.41187 * 14 13 11 40 40 H 1.09001 * 113.49090 * 91.91486 * 14 13 11 41 41 H 1.08990 * 113.49032 * 268.08532 * 16 13 11 42 42 H 1.09003 * 113.48288 * 38.59357 * 16 13 11 43 43 H 1.09003 * 109.53011 * 310.20105 * 17 15 14 44 44 H 1.08998 * 109.52777 * 70.41183 * 17 15 14 45 45 H 1.09002 * 109.59207 * 187.98107 * 18 17 15 46 46 H 1.08998 * 109.59189 * 67.53916 * 18 17 15 47 47 H 0.97001 * 120.00096 * 179.97438 * 23 22 20 48 48 H 1.08997 * 109.59522 * 184.59172 * 28 19 18 49 49 H 1.09006 * 109.59404 * 64.14479 * 28 19 18 50 50 H 1.09002 * 109.52805 * 289.74981 * 29 15 14 51 51 H 1.09000 * 109.52963 * 49.89411 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 0.0005 5 6 3.6025 -0.6068 0.0061 6 6 4.9021 -1.3695 0.0144 7 6 2.3539 -1.1321 0.0006 8 6 1.9590 -2.5864 0.0016 9 1 0.8736 -2.6682 -0.0556 10 6 2.4532 -3.2482 1.2895 11 6 2.5781 -3.2758 -1.1868 12 8 3.3575 -2.6769 -1.8972 13 7 2.2656 -4.5580 -1.4603 14 6 2.5625 -5.5129 -2.5401 15 6 1.2529 -6.2200 -2.2011 16 6 1.4726 -5.6155 -0.8133 17 6 0.0399 -5.6611 -2.9384 18 6 -1.2355 -6.2631 -2.3362 19 7 -1.1038 -7.7259 -2.3171 20 6 -2.0445 -8.5156 -2.9227 21 1 -2.5710 -8.1564 -3.7944 22 6 -2.3212 -9.7780 -2.4160 23 7 -1.8841 -10.1183 -1.2220 24 14 -3.3138 -10.9940 -3.4287 25 1 -2.6076 -11.2670 -4.7062 26 1 -3.4701 -12.2600 -2.6685 27 1 -4.6535 -10.4212 -3.7162 28 6 0.0508 -8.3298 -1.6390 29 6 1.3355 -7.7430 -2.2363 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 5.2662 -1.4782 -1.0072 34 1 5.6385 -0.8263 0.6066 35 1 4.7418 -2.3559 0.4498 36 1 3.5320 -3.1177 1.3743 37 1 1.9629 -2.7863 2.1465 38 1 2.2166 -4.3119 1.2654 39 1 2.5657 -5.0602 -3.5317 40 1 3.4466 -6.1216 -2.3509 41 1 2.0572 -6.2524 -0.1496 42 1 0.5569 -5.2492 -0.3490 43 1 0.0165 -4.5766 -2.8317 44 1 0.1030 -5.9231 -3.9946 45 1 -2.0951 -5.9815 -2.9445 46 1 -1.3686 -5.8948 -1.3190 47 1 -2.0778 -11.0003 -0.8678 48 1 0.0385 -9.4095 -1.7878 49 1 0.0074 -8.1051 -0.5732 50 1 1.4440 -8.0782 -3.2678 51 1 2.1945 -8.0749 -1.6531 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050697710.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:24 Heat of formation + Delta-G solvation = 78.142278 kcal Electronic energy + Delta-G solvation = -31927.953498 eV Core-core repulsion = 27832.495222 eV Total energy + Delta-G solvation = -4095.458277 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.00606 -40.92047 -38.79684 -36.03956 -35.65598 -33.98116 -32.68995 -31.89083 -30.57685 -29.74624 -28.80204 -27.96433 -27.25119 -26.05618 -24.94014 -24.11955 -22.46201 -21.99444 -20.86278 -20.36004 -18.89616 -18.12166 -17.74437 -17.30136 -16.80125 -16.55409 -15.80289 -15.61935 -14.97396 -14.89214 -14.18772 -13.98742 -13.79595 -13.69035 -13.63625 -13.52430 -13.37322 -13.23791 -13.14858 -13.00888 -12.80516 -12.55934 -12.46467 -12.28851 -12.17919 -11.90453 -11.61564 -11.47753 -11.42868 -11.07240 -11.01576 -10.77876 -10.55102 -10.38245 -10.20692 -10.03316 -9.87031 -9.79165 -9.68406 -9.41613 -9.16632 -8.62310 -8.51802 -6.68157 -5.84689 -3.31538 1.39695 2.04609 2.58718 2.85290 3.05672 3.34308 3.40126 3.41311 4.01980 4.23174 4.40208 4.43916 4.48467 4.56274 4.78084 4.88196 4.95937 5.02920 5.16618 5.20793 5.27546 5.30235 5.34733 5.37723 5.42088 5.46239 5.51508 5.54090 5.57856 5.60012 5.62251 5.65022 5.74308 5.77193 5.83913 5.93078 5.97918 6.04548 6.08283 6.19922 6.41343 6.51659 6.55517 6.59817 6.75778 6.87965 7.27384 7.59731 7.74081 7.77853 8.14238 8.19553 8.42262 9.16823 9.78439 10.35425 11.23161 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021882 B = 0.002450 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.262857 B =11424.448243 C =11939.199642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.029 3.971 3 N -0.372 5.372 4 O 0.091 5.909 5 C 0.007 3.993 6 C -0.071 4.071 7 C -0.192 4.192 8 C -0.024 4.024 9 H 0.107 0.893 10 C -0.145 4.145 11 C 0.545 3.455 12 O -0.540 6.540 13 N -0.640 5.640 14 C 0.108 3.892 15 C -0.075 4.075 16 C 0.107 3.893 17 C -0.107 4.107 18 C 0.148 3.852 19 N -0.590 5.590 20 C -0.254 4.254 21 H 0.063 0.937 22 C 0.006 3.994 23 N -0.904 5.904 24 Si 0.903 3.097 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.283 1.283 28 C 0.173 3.827 29 C -0.126 4.126 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.050 0.950 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.017 0.983 47 H 0.255 0.745 48 H 0.090 0.910 49 H 0.018 0.982 50 H 0.062 0.938 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.630 13.333 5.389 17.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.130 4.130 3 N -0.079 5.079 4 O 0.028 5.972 5 C -0.057 4.057 6 C -0.128 4.128 7 C -0.196 4.196 8 C -0.046 4.046 9 H 0.125 0.875 10 C -0.202 4.202 11 C 0.334 3.666 12 O -0.418 6.418 13 N -0.375 5.375 14 C -0.014 4.014 15 C -0.076 4.076 16 C -0.016 4.016 17 C -0.146 4.146 18 C 0.021 3.979 19 N -0.313 5.313 20 C -0.384 4.384 21 H 0.081 0.919 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.733 3.267 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.209 1.209 28 C 0.047 3.953 29 C -0.165 4.165 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.095 0.905 35 H 0.105 0.895 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.035 0.965 47 H 0.065 0.935 48 H 0.108 0.892 49 H 0.036 0.964 50 H 0.081 0.919 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.858 15.053 5.157 19.264 hybrid contribution -0.621 -1.466 -0.476 1.662 sum 10.238 13.587 4.681 17.644 Atomic orbital electron populations 1.20187 0.85985 1.03915 1.03389 1.23377 0.98802 0.88397 1.02431 1.73816 0.89246 1.23811 1.21040 1.84769 1.21649 1.22601 1.68156 1.24129 0.98232 0.83297 1.00034 1.20437 0.89757 0.97938 1.04646 1.20220 0.91981 0.95505 1.11898 1.19390 1.02109 0.88499 0.94589 0.87483 1.21872 1.02034 1.01082 0.95237 1.19921 0.81083 0.79896 0.85662 1.90675 1.35448 1.64601 1.51056 1.49630 1.51908 1.09138 1.26784 1.23123 0.98314 0.88147 0.91820 1.21644 0.94365 0.96819 0.94753 1.23192 0.94822 0.86435 0.97136 1.21728 0.95184 0.98036 0.99675 1.20887 0.94032 0.85925 0.97008 1.43974 1.23465 0.99339 1.64475 1.19131 1.15689 0.97271 1.06335 0.91932 1.25117 0.99076 0.99711 0.95417 1.69965 1.49058 1.20570 1.15204 0.86371 0.80166 0.80628 0.79569 1.20981 1.21614 1.20878 1.20781 0.82422 0.99169 0.92924 1.22095 1.00831 0.91663 1.01947 0.90035 0.90452 0.90013 0.88527 0.90489 0.89504 0.91739 0.91064 0.90989 0.90894 0.90094 0.89578 0.90262 0.93091 0.91718 0.92669 0.96489 0.93530 0.89184 0.96360 0.91924 0.92835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.27 36.01 0.37 -0.35 16 2 C 0.03 0.36 7.33 -82.10 -0.60 -0.24 16 3 N -0.37 -5.22 12.07 33.42 0.40 -4.81 16 4 O 0.09 1.22 11.20 17.18 0.19 1.41 16 5 C 0.01 0.08 6.83 -35.31 -0.24 -0.16 16 6 C -0.07 -0.66 8.81 36.00 0.32 -0.35 16 7 C -0.19 -2.34 4.65 -104.42 -0.49 -2.83 16 8 C -0.02 -0.26 2.79 -92.93 -0.26 -0.52 16 9 H 0.11 1.08 7.32 -51.93 -0.38 0.70 16 10 C -0.14 -1.26 9.03 37.16 0.34 -0.92 16 11 C 0.55 7.31 7.00 -10.99 -0.08 7.23 16 12 O -0.54 -8.77 14.34 5.56 0.08 -8.69 16 13 N -0.64 -8.17 3.45 -185.30 -0.64 -8.81 16 14 C 0.11 1.40 7.76 -8.37 -0.06 1.33 16 15 C -0.07 -1.06 0.83 -155.17 -0.13 -1.19 16 16 C 0.11 1.31 5.94 -8.20 -0.05 1.26 16 17 C -0.11 -1.68 5.25 -26.78 -0.14 -1.82 16 18 C 0.15 2.80 6.41 -3.65 -0.02 2.78 16 19 N -0.59 -13.50 2.95 -172.18 -0.51 -14.01 16 20 C -0.25 -6.58 9.55 -15.06 -0.14 -6.72 16 21 H 0.06 1.61 7.86 -52.49 -0.41 1.19 16 22 C 0.01 0.15 4.99 -17.43 -0.09 0.06 16 23 N -0.90 -24.74 11.13 55.49 0.62 -24.13 16 24 Si 0.90 20.80 29.57 -169.99 -5.03 15.77 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 C 0.17 3.65 5.23 -3.65 -0.02 3.63 16 29 C -0.13 -2.02 5.31 -26.77 -0.14 -2.17 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.69 7.51 -51.93 -0.39 0.30 16 33 H 0.10 1.02 7.47 -51.93 -0.39 0.63 16 34 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 0.76 5.33 -51.93 -0.28 0.49 16 36 H 0.06 0.53 5.53 -51.93 -0.29 0.25 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.60 6.67 -51.93 -0.35 0.25 16 39 H 0.07 0.99 8.10 -51.93 -0.42 0.57 16 40 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 41 H 0.09 0.96 8.06 -51.93 -0.42 0.54 16 42 H 0.08 0.97 7.53 -51.93 -0.39 0.58 16 43 H 0.05 0.75 7.95 -51.93 -0.41 0.34 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.05 1.06 7.92 -51.93 -0.41 0.65 16 46 H 0.02 0.32 7.60 -51.93 -0.39 -0.07 16 47 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 48 H 0.09 2.20 6.03 -51.93 -0.31 1.89 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.05 0.75 8.10 -51.93 -0.42 0.33 16 LS Contribution 396.39 15.07 5.97 5.97 Total: -1.00 -30.70 396.39 -8.53 -39.22 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -8.18 Total: -0.95 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -1.44 Total: -0.97 kcal Atomic # 7 Polarization: -51.64 SS G_CDS: -0.13 Total: -51.76 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.27 Total: -7.28 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.70 -8.53 -39.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050697710.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.365 kcal (2) G-P(sol) polarization free energy of solvation -30.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds