Wall clock time and date at job start Wed Apr 1 2020 04:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30168 * 126.80211 * 2 1 4 4 O 1.20921 * 111.60452 * 179.97438 * 3 2 1 5 5 C 1.34040 * 111.56854 * 359.76383 * 4 3 2 6 6 C 1.50692 * 126.77880 * 180.28740 * 5 4 3 7 7 C 1.35455 * 106.44245 * 0.37865 * 5 4 3 8 8 C 1.50695 * 128.00514 * 179.91433 * 7 5 4 9 9 H 1.09000 * 109.47505 * 182.88235 * 8 7 5 10 10 C 1.53000 * 109.47488 * 62.88170 * 8 7 5 11 11 C 1.50700 * 109.47164 * 302.88222 * 8 7 5 12 12 O 1.21277 * 119.99933 * 5.97073 * 11 8 7 13 13 N 1.34776 * 120.00118 * 185.97282 * 11 8 7 14 14 C 1.47167 * 136.00234 * 174.34701 * 13 11 8 15 15 C 1.52646 * 87.97174 * 206.71960 * 14 13 11 16 16 C 1.47168 * 136.00061 * 354.71076 * 13 11 8 17 17 C 1.52551 * 113.89601 * 88.17213 * 15 14 13 18 18 C 1.53356 * 109.12832 * 190.30707 * 17 15 14 19 19 N 1.46886 * 108.75186 * 307.75777 * 18 17 15 20 20 C 1.36936 * 120.46054 * 235.60781 * 19 18 17 21 21 H 1.07996 * 120.00588 * 31.11700 * 20 19 18 22 22 C 1.38815 * 119.99512 * 211.11603 * 20 19 18 23 23 N 1.31621 * 120.00263 * 13.20728 * 22 20 19 24 24 Si 1.86806 * 119.99875 * 193.20792 * 22 20 19 25 25 H 1.48499 * 109.47327 * 60.00043 * 24 22 20 26 26 H 1.48503 * 109.47048 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46837 * 299.99693 * 24 22 20 28 28 C 1.46886 * 119.07447 * 55.62167 * 19 18 17 29 29 C 1.52559 * 114.25901 * 220.76207 * 15 14 13 30 30 H 1.09003 * 109.46952 * 270.02896 * 1 2 3 31 31 H 1.08996 * 109.46987 * 30.02393 * 1 2 3 32 32 H 1.08995 * 109.47088 * 150.02616 * 1 2 3 33 33 H 1.09003 * 109.47363 * 275.11361 * 6 5 4 34 34 H 1.09000 * 109.47419 * 35.11186 * 6 5 4 35 35 H 1.09001 * 109.47598 * 155.11617 * 6 5 4 36 36 H 1.09002 * 109.47047 * 303.14060 * 10 8 7 37 37 H 1.09001 * 109.46864 * 63.13597 * 10 8 7 38 38 H 1.08995 * 109.47452 * 183.14021 * 10 8 7 39 39 H 1.09003 * 113.48937 * 321.41187 * 14 13 11 40 40 H 1.09001 * 113.49090 * 91.91486 * 14 13 11 41 41 H 1.08990 * 113.49032 * 268.08532 * 16 13 11 42 42 H 1.09003 * 113.48288 * 38.59357 * 16 13 11 43 43 H 1.09003 * 109.53011 * 310.20105 * 17 15 14 44 44 H 1.08998 * 109.52777 * 70.41183 * 17 15 14 45 45 H 1.09002 * 109.59207 * 187.98107 * 18 17 15 46 46 H 1.08998 * 109.59189 * 67.53916 * 18 17 15 47 47 H 0.97001 * 120.00096 * 179.97438 * 23 22 20 48 48 H 1.08997 * 109.59522 * 184.59172 * 28 19 18 49 49 H 1.09006 * 109.59404 * 64.14479 * 28 19 18 50 50 H 1.09002 * 109.52805 * 289.74981 * 29 15 14 51 51 H 1.09000 * 109.52963 * 49.89411 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 0.0005 5 6 3.6025 -0.6068 0.0061 6 6 4.9021 -1.3695 0.0144 7 6 2.3539 -1.1321 0.0006 8 6 1.9590 -2.5864 0.0016 9 1 0.8736 -2.6682 -0.0556 10 6 2.4532 -3.2482 1.2895 11 6 2.5781 -3.2758 -1.1868 12 8 3.3575 -2.6769 -1.8972 13 7 2.2656 -4.5580 -1.4603 14 6 2.5625 -5.5129 -2.5401 15 6 1.2529 -6.2200 -2.2011 16 6 1.4726 -5.6155 -0.8133 17 6 0.0399 -5.6611 -2.9384 18 6 -1.2355 -6.2631 -2.3362 19 7 -1.1038 -7.7259 -2.3171 20 6 -2.0445 -8.5156 -2.9227 21 1 -2.5710 -8.1564 -3.7944 22 6 -2.3212 -9.7780 -2.4160 23 7 -1.8841 -10.1183 -1.2220 24 14 -3.3138 -10.9940 -3.4287 25 1 -2.6076 -11.2670 -4.7062 26 1 -3.4701 -12.2600 -2.6685 27 1 -4.6535 -10.4212 -3.7162 28 6 0.0508 -8.3298 -1.6390 29 6 1.3355 -7.7430 -2.2363 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 5.2662 -1.4782 -1.0072 34 1 5.6385 -0.8263 0.6066 35 1 4.7418 -2.3559 0.4498 36 1 3.5320 -3.1177 1.3743 37 1 1.9629 -2.7863 2.1465 38 1 2.2166 -4.3119 1.2654 39 1 2.5657 -5.0602 -3.5317 40 1 3.4466 -6.1216 -2.3509 41 1 2.0572 -6.2524 -0.1496 42 1 0.5569 -5.2492 -0.3490 43 1 0.0165 -4.5766 -2.8317 44 1 0.1030 -5.9231 -3.9946 45 1 -2.0951 -5.9815 -2.9445 46 1 -1.3686 -5.8948 -1.3190 47 1 -2.0778 -11.0003 -0.8678 48 1 0.0385 -9.4095 -1.7878 49 1 0.0074 -8.1051 -0.5732 50 1 1.4440 -8.0782 -3.2678 51 1 2.1945 -8.0749 -1.6531 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050697710.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:23 Heat of formation + Delta-G solvation = 61.647814 kcal Electronic energy + Delta-G solvation = -31928.668752 eV Core-core repulsion = 27832.495222 eV Total energy + Delta-G solvation = -4096.173530 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -45.93501 -42.01560 -39.90160 -37.53815 -36.62297 -34.85185 -34.25927 -32.96350 -31.96093 -31.26417 -29.62006 -28.77701 -28.56099 -27.07038 -26.16808 -25.40446 -23.91901 -23.12609 -22.17990 -21.33180 -20.01278 -19.42795 -18.69827 -18.36509 -18.15151 -17.66342 -16.83997 -16.80415 -16.68464 -15.83572 -15.60996 -15.32481 -15.07277 -14.93333 -14.61810 -14.48475 -14.31176 -14.25178 -14.04379 -13.92092 -13.87406 -13.70545 -13.34403 -13.27206 -13.18339 -13.01851 -12.96198 -12.85766 -12.74166 -12.53157 -12.25269 -12.23323 -11.99267 -11.86668 -11.77105 -11.32063 -11.20096 -11.09321 -10.91494 -10.61954 -10.43170 -10.08965 -9.65643 -8.53705 -7.81354 -5.29692 0.48091 1.13666 1.50285 1.51693 1.57814 1.59007 1.87964 2.17580 2.54989 3.16492 3.27618 3.35426 3.46614 3.57959 3.67345 3.76796 3.87110 4.00476 4.08962 4.13702 4.23438 4.29046 4.42681 4.48574 4.55293 4.59829 4.61932 4.64763 4.65106 4.68024 4.72191 4.75757 4.80473 4.85644 4.87346 4.88725 4.96723 5.00668 5.06853 5.10840 5.17341 5.19627 5.25204 5.34592 5.40420 5.43689 5.62111 5.72197 5.90012 6.48557 6.76231 7.12650 7.24135 7.27194 7.95323 8.44872 9.23010 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021882 B = 0.002450 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.262857 B =11424.448243 C =11939.199642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.023 3.977 3 N -0.400 5.400 4 O 0.076 5.924 5 C 0.002 3.998 6 C -0.068 4.068 7 C -0.204 4.204 8 C -0.018 4.018 9 H 0.118 0.882 10 C -0.142 4.142 11 C 0.544 3.456 12 O -0.572 6.572 13 N -0.637 5.637 14 C 0.114 3.886 15 C -0.079 4.079 16 C 0.115 3.885 17 C -0.094 4.094 18 C 0.147 3.853 19 N -0.609 5.609 20 C -0.262 4.262 21 H 0.058 0.942 22 C -0.043 4.043 23 N -0.929 5.929 24 Si 0.959 3.041 25 H -0.280 1.280 26 H -0.294 1.294 27 H -0.279 1.279 28 C 0.179 3.821 29 C -0.110 4.110 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.101 0.899 41 H 0.107 0.893 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.046 0.954 46 H 0.024 0.976 47 H 0.250 0.750 48 H 0.052 0.948 49 H 0.009 0.991 50 H 0.051 0.949 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.317 13.631 6.022 18.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.136 4.136 3 N -0.110 5.110 4 O 0.016 5.984 5 C -0.062 4.062 6 C -0.125 4.125 7 C -0.208 4.208 8 C -0.040 4.040 9 H 0.136 0.864 10 C -0.199 4.199 11 C 0.334 3.666 12 O -0.452 6.452 13 N -0.371 5.371 14 C -0.008 4.008 15 C -0.080 4.080 16 C -0.007 4.007 17 C -0.133 4.133 18 C 0.022 3.978 19 N -0.332 5.332 20 C -0.393 4.393 21 H 0.076 0.924 22 C -0.239 4.239 23 N -0.575 5.575 24 Si 0.788 3.212 25 H -0.207 1.207 26 H -0.220 1.220 27 H -0.205 1.205 28 C 0.053 3.947 29 C -0.149 4.149 30 H 0.118 0.882 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.101 0.899 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.125 0.875 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.042 0.958 47 H 0.059 0.941 48 H 0.070 0.930 49 H 0.027 0.973 50 H 0.070 0.930 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.562 15.364 5.784 20.080 hybrid contribution -0.855 -1.527 -0.700 1.885 sum 10.707 13.837 5.084 18.220 Atomic orbital electron populations 1.20327 0.84045 1.04430 1.04723 1.23929 1.00182 0.88209 1.01263 1.73802 0.89678 1.24863 1.22681 1.84731 1.21615 1.23390 1.68653 1.24647 0.99386 0.82960 0.99195 1.20513 0.89201 0.98351 1.04390 1.20470 0.92017 0.96144 1.12173 1.19425 1.02501 0.87549 0.94508 0.86432 1.21887 1.02370 1.01309 0.94306 1.20328 0.80628 0.79734 0.85871 1.90670 1.36965 1.65217 1.52306 1.49604 1.51692 1.09135 1.26683 1.23071 0.97955 0.88057 0.91714 1.21500 0.94577 0.95394 0.96495 1.23211 0.95323 0.86129 0.96080 1.21526 0.94222 0.98571 0.98958 1.20977 0.95529 0.83901 0.97432 1.44228 1.23682 1.00799 1.64515 1.19393 1.15786 0.97898 1.06223 0.92406 1.25734 1.00562 1.01217 0.96376 1.70101 1.50463 1.20511 1.16449 0.85475 0.79006 0.78498 0.78217 1.20669 1.22016 1.20530 1.20608 0.84228 0.97230 0.92623 1.21857 0.98982 0.92839 1.01270 0.88218 0.90321 0.89074 0.89708 0.88085 0.88674 0.91392 0.89887 0.90277 0.91583 0.88118 0.87542 0.89848 0.91661 0.92765 0.93556 0.95824 0.94110 0.92981 0.97288 0.92991 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.31 10.27 71.24 0.73 -0.58 16 2 C 0.02 0.55 7.33 43.58 0.32 0.87 16 3 N -0.40 -11.09 12.07 -49.57 -0.60 -11.69 16 4 O 0.08 2.01 11.20 71.63 0.80 2.82 16 5 C 0.00 0.04 6.83 25.04 0.17 0.21 16 6 C -0.07 -1.17 8.81 71.23 0.63 -0.54 16 7 C -0.20 -4.66 4.65 -19.74 -0.09 -4.75 16 8 C -0.02 -0.35 2.79 -12.29 -0.03 -0.39 16 9 H 0.12 2.02 7.32 -2.39 -0.02 2.00 16 10 C -0.14 -2.01 9.03 71.98 0.65 -1.36 16 11 C 0.54 13.27 7.00 87.66 0.61 13.89 16 12 O -0.57 -17.66 14.34 -3.02 -0.04 -17.70 16 13 N -0.64 -14.33 3.45 -858.55 -2.96 -17.29 16 14 C 0.11 2.61 7.76 83.21 0.65 3.26 16 15 C -0.08 -2.03 0.83 -52.61 -0.04 -2.08 16 16 C 0.11 2.43 5.94 83.32 0.50 2.92 16 17 C -0.09 -2.78 5.25 30.56 0.16 -2.62 16 18 C 0.15 5.44 6.41 86.42 0.55 5.99 16 19 N -0.61 -27.82 2.95 -698.66 -2.06 -29.88 16 20 C -0.26 -13.68 9.55 84.03 0.80 -12.88 16 21 H 0.06 3.00 7.86 -2.91 -0.02 2.97 16 22 C -0.04 -2.28 4.99 84.86 0.42 -1.86 16 23 N -0.93 -51.69 11.13 21.65 0.24 -51.45 16 24 Si 0.96 43.13 29.57 68.60 2.03 45.16 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 27 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 28 C 0.18 7.48 5.23 86.43 0.45 7.93 16 29 C -0.11 -3.34 5.31 30.57 0.16 -3.18 16 30 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.09 1.34 7.51 -2.39 -0.02 1.32 16 33 H 0.08 1.71 7.47 -2.39 -0.02 1.69 16 34 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 1.47 5.33 -2.39 -0.01 1.45 16 36 H 0.07 0.92 5.53 -2.39 -0.01 0.91 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.02 6.67 -2.39 -0.02 1.01 16 39 H 0.07 1.63 8.10 -2.39 -0.02 1.61 16 40 H 0.10 1.96 8.09 -2.39 -0.02 1.94 16 41 H 0.11 1.91 8.06 -2.39 -0.02 1.89 16 42 H 0.08 1.75 7.53 -2.39 -0.02 1.73 16 43 H 0.06 1.77 7.95 -2.39 -0.02 1.75 16 44 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.05 1.76 7.92 -2.39 -0.02 1.74 16 46 H 0.02 0.85 7.60 -2.39 -0.02 0.83 16 47 H 0.25 13.57 8.31 -92.71 -0.77 12.80 16 48 H 0.05 2.58 6.03 -2.39 -0.01 2.57 16 49 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 50 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 51 H 0.08 2.04 8.10 -2.39 -0.02 2.02 16 Total: -1.00 -67.25 396.39 4.98 -62.28 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.93 Total: 12.91 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: 6.64 Total: 4.84 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -5.38 Total: -110.31 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.76 Total: -14.89 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -67.25 4.98 -62.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050697710.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.925 kcal (2) G-P(sol) polarization free energy of solvation -67.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds