Wall clock time and date at job start Wed Apr 1 2020 04:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30175 * 126.80324 * 2 1 4 4 O 1.20923 * 111.60379 * 180.25124 * 3 2 1 5 5 C 1.34034 * 111.57006 * 359.74897 * 4 3 2 6 6 C 1.50703 * 126.78107 * 179.97438 * 5 4 3 7 7 C 1.35458 * 106.44456 * 359.97438 * 5 4 3 8 8 C 1.50694 * 128.00661 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47199 * 89.99918 * 8 7 5 10 10 C 1.50703 * 109.47089 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00067 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99786 * 179.97438 * 10 9 8 13 13 C 1.47172 * 136.00025 * 359.62513 * 12 10 9 14 14 C 1.52667 * 87.96011 * 206.73660 * 13 12 10 15 15 C 1.47162 * 135.99812 * 179.97438 * 12 10 9 16 16 C 1.52560 * 113.90988 * 88.15895 * 14 13 12 17 17 C 1.53353 * 109.13050 * 190.30467 * 16 14 13 18 18 N 1.46882 * 108.74947 * 307.75809 * 17 16 14 19 19 C 1.36933 * 120.46167 * 235.64437 * 18 17 16 20 20 H 1.07994 * 120.00186 * 28.44042 * 19 18 17 21 21 C 1.38815 * 120.00110 * 208.43786 * 19 18 17 22 22 N 1.31620 * 120.00141 * 17.65314 * 21 19 18 23 23 Si 1.86800 * 120.00085 * 197.65410 * 21 19 18 24 24 H 1.48502 * 109.46901 * 59.99986 * 23 21 19 25 25 H 1.48493 * 109.47207 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47164 * 300.00257 * 23 21 19 27 27 C 1.46898 * 119.07557 * 55.62940 * 18 17 16 28 28 C 1.52556 * 114.25149 * 220.75151 * 14 13 12 29 29 H 1.09000 * 109.47097 * 270.16647 * 1 2 3 30 30 H 1.08997 * 109.46869 * 30.16482 * 1 2 3 31 31 H 1.08995 * 109.46928 * 150.15939 * 1 2 3 32 32 H 1.08996 * 109.46983 * 270.00087 * 6 5 4 33 33 H 1.09000 * 109.46845 * 29.99639 * 6 5 4 34 34 H 1.08994 * 109.47040 * 149.99782 * 6 5 4 35 35 H 1.08998 * 109.47199 * 330.00215 * 8 7 5 36 36 H 1.09002 * 109.47482 * 209.99453 * 8 7 5 37 37 H 1.09001 * 109.47105 * 299.99630 * 9 8 7 38 38 H 1.08997 * 109.47464 * 59.99711 * 9 8 7 39 39 H 1.08993 * 113.48925 * 321.43683 * 13 12 10 40 40 H 1.09000 * 113.48529 * 91.94800 * 13 12 10 41 41 H 1.09002 * 113.48712 * 268.05875 * 15 12 10 42 42 H 1.08994 * 113.49007 * 38.56949 * 15 12 10 43 43 H 1.09003 * 109.52601 * 310.20183 * 16 14 13 44 44 H 1.08994 * 109.52836 * 70.40712 * 16 14 13 45 45 H 1.08994 * 109.59334 * 187.97585 * 17 16 14 46 46 H 1.09006 * 109.59065 * 67.53390 * 17 16 14 47 47 H 0.96999 * 120.00318 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.58859 * 184.59222 * 27 18 17 49 49 H 1.08998 * 109.59646 * 64.14091 * 27 18 17 50 50 H 1.08994 * 109.52572 * 289.74322 * 28 14 13 51 51 H 1.09002 * 109.52334 * 49.95300 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 -0.0049 5 6 3.6025 -0.6068 -0.0035 6 6 4.9022 -1.3696 -0.0089 7 6 2.3539 -1.1320 0.0037 8 6 1.9591 -2.5863 0.0076 9 6 1.8330 -3.0768 1.4515 10 6 1.4388 -4.5313 1.4553 11 8 1.2743 -5.1178 0.4066 12 7 1.2690 -5.1803 2.6243 13 6 1.3766 -4.8368 4.0513 14 6 1.6838 -6.3068 4.3260 15 6 0.9007 -6.5451 3.0335 16 6 3.1655 -6.6573 4.2298 17 6 3.3246 -8.1821 4.2665 18 7 2.6082 -8.7035 5.4379 19 6 3.2601 -9.4719 6.3650 20 1 4.3199 -9.3408 6.5260 21 6 2.5588 -10.4194 7.0981 22 7 1.3785 -10.8297 6.6847 23 14 3.2901 -11.1120 8.6712 24 1 3.5198 -10.0085 9.6380 25 1 2.3504 -12.0988 9.2614 26 1 4.5812 -11.7788 8.3652 27 6 1.1826 -8.3889 5.6011 28 6 1.0081 -6.8655 5.5744 29 1 -0.3633 0.0030 1.0277 30 1 -0.3633 0.8885 -0.5164 31 1 -0.3633 -0.8914 -0.5113 32 1 5.2103 -1.5552 -1.0378 33 1 5.6686 -0.7851 0.5000 34 1 4.7677 -2.3202 0.5072 35 1 2.7200 -3.1708 -0.5095 36 1 1.0022 -2.7044 -0.5009 37 1 2.7899 -2.9588 1.9601 38 1 1.0722 -2.4923 1.9687 39 1 2.2097 -4.1710 4.2762 40 1 0.4368 -4.5003 4.4891 41 1 -0.1696 -6.6771 3.1921 42 1 1.3326 -7.3200 2.4003 43 1 3.5713 -6.2709 3.2947 44 1 3.6998 -6.2148 5.0704 45 1 4.3816 -8.4375 4.3409 46 1 2.9048 -8.6153 3.3586 47 1 0.8886 -11.4921 7.1967 48 1 0.8288 -8.7806 6.5548 49 1 0.6138 -8.8363 4.7860 50 1 1.4667 -6.4305 6.4624 51 1 -0.0539 -6.6207 5.5543 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050752883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:17 Heat of formation + Delta-G solvation = 69.491833 kcal Electronic energy + Delta-G solvation = -30764.375368 eV Core-core repulsion = 26668.541980 eV Total energy + Delta-G solvation = -4095.833388 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.19851 -40.82259 -38.62398 -36.17771 -35.86559 -34.08610 -32.58930 -32.01792 -30.67397 -29.80995 -28.99533 -28.26929 -27.23724 -26.25645 -24.78149 -23.99584 -22.42139 -21.60938 -20.91066 -20.37963 -19.10890 -18.05980 -17.92924 -17.37509 -16.87828 -16.42652 -15.97778 -15.75011 -15.08146 -14.87546 -14.47216 -14.15097 -13.92747 -13.81074 -13.66813 -13.57544 -13.46362 -13.27314 -13.05777 -12.98790 -12.86956 -12.69441 -12.61983 -12.36117 -12.21198 -11.90304 -11.66816 -11.52073 -11.45875 -11.09467 -11.06786 -10.74533 -10.52351 -10.36747 -10.16236 -10.12502 -9.94284 -9.83910 -9.65906 -9.47603 -9.31607 -8.60890 -8.48357 -6.69617 -5.82274 -3.24932 1.15801 1.88126 2.62344 2.78766 2.92294 3.36065 3.42306 3.43141 3.87355 4.13782 4.29856 4.46606 4.48666 4.54173 4.71844 4.82469 4.87014 4.98588 5.03748 5.04910 5.14332 5.19526 5.20208 5.24138 5.35163 5.37566 5.43457 5.45084 5.49323 5.55285 5.59579 5.62082 5.69370 5.75179 5.81465 5.91035 5.96433 6.02861 6.05320 6.22775 6.40953 6.53003 6.57055 6.61592 6.77432 6.91911 7.29089 7.60789 7.76527 7.81528 8.00160 8.15716 8.42589 9.18317 9.81636 10.37941 11.25898 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023244 B = 0.001996 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.300221 B =14022.535778 C =14428.210220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.023 3.977 3 N -0.369 5.369 4 O 0.096 5.904 5 C -0.028 4.028 6 C -0.076 4.076 7 C -0.199 4.199 8 C -0.024 4.024 9 C -0.128 4.128 10 C 0.539 3.461 11 O -0.547 6.547 12 N -0.642 5.642 13 C 0.100 3.900 14 C -0.075 4.075 15 C 0.113 3.887 16 C -0.105 4.105 17 C 0.147 3.853 18 N -0.590 5.590 19 C -0.254 4.254 20 H 0.064 0.936 21 C 0.003 3.997 22 N -0.902 5.902 23 Si 0.902 3.098 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.283 1.283 27 C 0.171 3.829 28 C -0.125 4.125 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.055 0.945 46 H 0.018 0.982 47 H 0.255 0.745 48 H 0.090 0.910 49 H 0.018 0.982 50 H 0.062 0.938 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.688 20.143 -10.489 22.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.135 4.135 3 N -0.075 5.075 4 O 0.031 5.969 5 C -0.091 4.091 6 C -0.134 4.134 7 C -0.203 4.203 8 C -0.062 4.062 9 C -0.168 4.168 10 C 0.329 3.671 11 O -0.425 6.425 12 N -0.377 5.377 13 C -0.023 4.023 14 C -0.076 4.076 15 C -0.009 4.009 16 C -0.145 4.145 17 C 0.020 3.980 18 N -0.313 5.313 19 C -0.383 4.383 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.045 3.955 28 C -0.164 4.164 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.103 0.897 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.092 0.908 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.097 0.903 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.036 0.964 47 H 0.064 0.936 48 H 0.108 0.892 49 H 0.037 0.963 50 H 0.081 0.919 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.315 21.128 -11.190 23.910 hybrid contribution 0.111 -1.031 0.892 1.368 sum 0.426 20.097 -10.299 22.586 Atomic orbital electron populations 1.20187 0.85980 1.03848 1.03480 1.23474 0.98943 0.88505 1.02614 1.73846 0.89310 1.23974 1.20395 1.84796 1.21623 1.22581 1.67901 1.24316 0.98318 0.83740 1.02751 1.20382 0.89973 0.98716 1.04295 1.20976 0.91606 0.97506 1.10210 1.19600 1.03662 0.87360 0.95626 1.21552 1.03795 0.92739 0.98689 1.20099 0.77016 0.88240 0.81788 1.90707 1.52480 1.68872 1.30454 1.49720 1.67965 1.14692 1.05334 1.23216 1.01288 0.98777 0.78978 1.21657 0.97261 0.93205 0.95517 1.23077 0.99685 0.83976 0.94115 1.21708 0.92424 1.00005 1.00331 1.20880 0.96482 0.90197 0.90411 1.44013 1.06822 1.58242 1.22192 1.19133 0.93794 1.12218 1.13194 0.91794 1.25042 0.97587 0.96568 1.00381 1.70017 1.14555 1.31850 1.38167 0.86385 0.78293 0.78424 0.83760 1.21040 1.21667 1.20898 1.20790 0.84892 0.87902 1.01916 1.22074 0.97830 1.01384 0.95160 0.90100 0.90547 0.89862 0.89252 0.89691 0.88866 0.89601 0.89664 0.88983 0.89049 0.90797 0.89864 0.89978 0.90327 0.93053 0.91728 0.92638 0.96399 0.93551 0.89172 0.96344 0.91880 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.39 36.01 0.37 -0.20 16 2 C 0.02 0.24 7.33 -82.10 -0.60 -0.36 16 3 N -0.37 -4.32 12.07 33.42 0.40 -3.92 16 4 O 0.10 1.02 11.20 17.19 0.19 1.21 16 5 C -0.03 -0.24 7.49 -35.30 -0.26 -0.51 16 6 C -0.08 -0.41 10.25 36.01 0.37 -0.04 16 7 C -0.20 -1.85 5.58 -104.42 -0.58 -2.44 16 8 C -0.02 -0.22 4.76 -27.88 -0.13 -0.36 16 9 C -0.13 -1.19 5.51 -27.88 -0.15 -1.34 16 10 C 0.54 7.16 8.08 -10.98 -0.09 7.07 16 11 O -0.55 -9.26 16.76 5.56 0.09 -9.17 16 12 N -0.64 -8.46 3.46 -185.25 -0.64 -9.10 16 13 C 0.10 1.14 7.56 -8.34 -0.06 1.08 16 14 C -0.08 -1.09 0.83 -155.14 -0.13 -1.22 16 15 C 0.11 1.67 7.57 -8.18 -0.06 1.61 16 16 C -0.11 -1.66 5.26 -26.77 -0.14 -1.80 16 17 C 0.15 2.91 6.41 -3.65 -0.02 2.88 16 18 N -0.59 -13.91 2.96 -172.18 -0.51 -14.42 16 19 C -0.25 -6.67 9.56 -15.06 -0.14 -6.81 16 20 H 0.06 1.66 7.89 -52.49 -0.41 1.24 16 21 C 0.00 0.08 4.89 -17.43 -0.09 -0.01 16 22 N -0.90 -25.29 11.21 55.49 0.62 -24.67 16 23 Si 0.90 21.03 29.59 -169.99 -5.03 16.00 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.17 3.74 5.27 -3.64 -0.02 3.72 16 28 C -0.12 -2.05 5.31 -26.77 -0.14 -2.19 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.53 7.65 -51.93 -0.40 0.14 16 32 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.09 0.46 8.05 -51.93 -0.42 0.04 16 35 H 0.09 0.80 8.04 -51.93 -0.42 0.39 16 36 H 0.08 0.82 7.61 -51.93 -0.40 0.43 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.08 0.83 8.09 -51.93 -0.42 0.41 16 41 H 0.08 1.15 8.06 -51.93 -0.42 0.73 16 42 H 0.08 1.31 7.53 -51.93 -0.39 0.92 16 43 H 0.05 0.75 7.95 -51.93 -0.41 0.34 16 44 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 1.09 7.92 -51.93 -0.41 0.68 16 46 H 0.02 0.37 7.60 -51.93 -0.39 -0.02 16 47 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 48 H 0.09 2.25 5.97 -51.93 -0.31 1.94 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.05 0.77 8.09 -51.93 -0.42 0.35 16 LS Contribution 410.73 15.07 6.19 6.19 Total: -1.00 -31.93 410.73 -9.15 -41.08 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -8.58 Total: -2.28 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.89 Total: -0.92 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.12 Total: -52.11 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: 0.29 Total: -7.96 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.93 -9.15 -41.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050752883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.571 kcal (2) G-P(sol) polarization free energy of solvation -31.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds