Wall clock time and date at job start Wed Apr 1 2020 04:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30175 * 126.80324 * 2 1 4 4 O 1.20923 * 111.60379 * 180.25124 * 3 2 1 5 5 C 1.34034 * 111.57006 * 359.74897 * 4 3 2 6 6 C 1.50703 * 126.78107 * 179.97438 * 5 4 3 7 7 C 1.35458 * 106.44456 * 359.97438 * 5 4 3 8 8 C 1.50694 * 128.00661 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47199 * 89.99918 * 8 7 5 10 10 C 1.50703 * 109.47089 * 180.02562 * 9 8 7 11 11 O 1.21277 * 120.00067 * 359.97438 * 10 9 8 12 12 N 1.34779 * 119.99786 * 179.97438 * 10 9 8 13 13 C 1.47172 * 136.00025 * 359.62513 * 12 10 9 14 14 C 1.52667 * 87.96011 * 206.73660 * 13 12 10 15 15 C 1.47162 * 135.99812 * 179.97438 * 12 10 9 16 16 C 1.52560 * 113.90988 * 88.15895 * 14 13 12 17 17 C 1.53353 * 109.13050 * 190.30467 * 16 14 13 18 18 N 1.46882 * 108.74947 * 307.75809 * 17 16 14 19 19 C 1.36933 * 120.46167 * 235.64437 * 18 17 16 20 20 H 1.07994 * 120.00186 * 28.44042 * 19 18 17 21 21 C 1.38815 * 120.00110 * 208.43786 * 19 18 17 22 22 N 1.31620 * 120.00141 * 17.65314 * 21 19 18 23 23 Si 1.86800 * 120.00085 * 197.65410 * 21 19 18 24 24 H 1.48502 * 109.46901 * 59.99986 * 23 21 19 25 25 H 1.48493 * 109.47207 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47164 * 300.00257 * 23 21 19 27 27 C 1.46898 * 119.07557 * 55.62940 * 18 17 16 28 28 C 1.52556 * 114.25149 * 220.75151 * 14 13 12 29 29 H 1.09000 * 109.47097 * 270.16647 * 1 2 3 30 30 H 1.08997 * 109.46869 * 30.16482 * 1 2 3 31 31 H 1.08995 * 109.46928 * 150.15939 * 1 2 3 32 32 H 1.08996 * 109.46983 * 270.00087 * 6 5 4 33 33 H 1.09000 * 109.46845 * 29.99639 * 6 5 4 34 34 H 1.08994 * 109.47040 * 149.99782 * 6 5 4 35 35 H 1.08998 * 109.47199 * 330.00215 * 8 7 5 36 36 H 1.09002 * 109.47482 * 209.99453 * 8 7 5 37 37 H 1.09001 * 109.47105 * 299.99630 * 9 8 7 38 38 H 1.08997 * 109.47464 * 59.99711 * 9 8 7 39 39 H 1.08993 * 113.48925 * 321.43683 * 13 12 10 40 40 H 1.09000 * 113.48529 * 91.94800 * 13 12 10 41 41 H 1.09002 * 113.48712 * 268.05875 * 15 12 10 42 42 H 1.08994 * 113.49007 * 38.56949 * 15 12 10 43 43 H 1.09003 * 109.52601 * 310.20183 * 16 14 13 44 44 H 1.08994 * 109.52836 * 70.40712 * 16 14 13 45 45 H 1.08994 * 109.59334 * 187.97585 * 17 16 14 46 46 H 1.09006 * 109.59065 * 67.53390 * 17 16 14 47 47 H 0.96999 * 120.00318 * 179.97438 * 22 21 19 48 48 H 1.09001 * 109.58859 * 184.59222 * 27 18 17 49 49 H 1.08998 * 109.59646 * 64.14091 * 27 18 17 50 50 H 1.08994 * 109.52572 * 289.74322 * 28 14 13 51 51 H 1.09002 * 109.52334 * 49.95300 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4538 0.7253 -0.0049 5 6 3.6025 -0.6068 -0.0035 6 6 4.9022 -1.3696 -0.0089 7 6 2.3539 -1.1320 0.0037 8 6 1.9591 -2.5863 0.0076 9 6 1.8330 -3.0768 1.4515 10 6 1.4388 -4.5313 1.4553 11 8 1.2743 -5.1178 0.4066 12 7 1.2690 -5.1803 2.6243 13 6 1.3766 -4.8368 4.0513 14 6 1.6838 -6.3068 4.3260 15 6 0.9007 -6.5451 3.0335 16 6 3.1655 -6.6573 4.2298 17 6 3.3246 -8.1821 4.2665 18 7 2.6082 -8.7035 5.4379 19 6 3.2601 -9.4719 6.3650 20 1 4.3199 -9.3408 6.5260 21 6 2.5588 -10.4194 7.0981 22 7 1.3785 -10.8297 6.6847 23 14 3.2901 -11.1120 8.6712 24 1 3.5198 -10.0085 9.6380 25 1 2.3504 -12.0988 9.2614 26 1 4.5812 -11.7788 8.3652 27 6 1.1826 -8.3889 5.6011 28 6 1.0081 -6.8655 5.5744 29 1 -0.3633 0.0030 1.0277 30 1 -0.3633 0.8885 -0.5164 31 1 -0.3633 -0.8914 -0.5113 32 1 5.2103 -1.5552 -1.0378 33 1 5.6686 -0.7851 0.5000 34 1 4.7677 -2.3202 0.5072 35 1 2.7200 -3.1708 -0.5095 36 1 1.0022 -2.7044 -0.5009 37 1 2.7899 -2.9588 1.9601 38 1 1.0722 -2.4923 1.9687 39 1 2.2097 -4.1710 4.2762 40 1 0.4368 -4.5003 4.4891 41 1 -0.1696 -6.6771 3.1921 42 1 1.3326 -7.3200 2.4003 43 1 3.5713 -6.2709 3.2947 44 1 3.6998 -6.2148 5.0704 45 1 4.3816 -8.4375 4.3409 46 1 2.9048 -8.6153 3.3586 47 1 0.8886 -11.4921 7.1967 48 1 0.8288 -8.7806 6.5548 49 1 0.6138 -8.8363 4.7860 50 1 1.4667 -6.4305 6.4624 51 1 -0.0539 -6.6207 5.5543 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050752883.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:16 Heat of formation + Delta-G solvation = 51.945175 kcal Electronic energy + Delta-G solvation = -30765.136248 eV Core-core repulsion = 26668.541980 eV Total energy + Delta-G solvation = -4096.594268 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.91614 -41.94738 -39.74906 -37.56467 -36.80580 -34.74145 -34.25195 -32.87638 -32.12043 -31.36468 -29.62819 -29.13764 -28.29776 -27.30825 -26.06954 -25.26033 -23.93624 -22.63442 -22.20006 -21.03131 -20.22396 -19.44632 -18.68027 -18.39548 -18.09562 -17.54982 -17.01821 -16.85971 -16.67935 -15.96396 -15.64708 -15.32513 -15.18750 -14.94626 -14.80835 -14.49979 -14.30629 -14.05386 -13.98972 -13.91620 -13.75131 -13.63429 -13.46529 -13.29756 -13.21280 -13.03154 -12.99486 -12.88350 -12.74222 -12.51426 -12.28235 -12.26203 -12.01302 -11.77845 -11.74782 -11.35414 -11.24862 -11.12875 -10.86617 -10.70077 -10.45867 -10.05871 -9.67586 -8.61844 -7.83580 -5.28910 0.48749 1.17890 1.49938 1.51510 1.58307 1.63148 1.89249 2.21623 2.54512 3.20459 3.26816 3.39155 3.50268 3.54635 3.73484 3.81749 3.89170 4.01490 4.06465 4.19059 4.28247 4.31885 4.39555 4.48241 4.53209 4.55805 4.63727 4.65049 4.65932 4.69920 4.70699 4.75995 4.81529 4.84262 4.87746 4.93459 4.95382 5.03772 5.05973 5.06907 5.17084 5.17293 5.23769 5.35104 5.39112 5.40718 5.57738 5.69480 5.84240 6.43931 6.81685 7.13912 7.19925 7.30966 7.91732 8.42250 9.21718 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.023244 B = 0.001996 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.300221 B =14022.535778 C =14428.210220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.018 3.982 3 N -0.401 5.401 4 O 0.081 5.919 5 C -0.021 4.021 6 C -0.078 4.078 7 C -0.209 4.209 8 C -0.016 4.016 9 C -0.115 4.115 10 C 0.536 3.464 11 O -0.591 6.591 12 N -0.642 5.642 13 C 0.119 3.881 14 C -0.079 4.079 15 C 0.108 3.892 16 C -0.090 4.090 17 C 0.143 3.857 18 N -0.608 5.608 19 C -0.261 4.261 20 H 0.065 0.935 21 C -0.050 4.050 22 N -0.934 5.934 23 Si 0.964 3.036 24 H -0.276 1.276 25 H -0.297 1.297 26 H -0.279 1.279 27 C 0.175 3.825 28 C -0.108 4.108 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.050 0.950 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.051 0.949 46 H 0.003 0.997 47 H 0.249 0.751 48 H 0.055 0.945 49 H -0.007 1.007 50 H 0.065 0.935 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.410 22.531 -9.838 24.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.141 4.141 3 N -0.110 5.110 4 O 0.020 5.980 5 C -0.084 4.084 6 C -0.135 4.135 7 C -0.213 4.213 8 C -0.054 4.054 9 C -0.155 4.155 10 C 0.328 3.672 11 O -0.472 6.472 12 N -0.376 5.376 13 C -0.003 4.003 14 C -0.080 4.080 15 C -0.015 4.015 16 C -0.129 4.129 17 C 0.017 3.983 18 N -0.331 5.331 19 C -0.391 4.391 20 H 0.083 0.917 21 C -0.246 4.246 22 N -0.580 5.580 23 Si 0.793 3.207 24 H -0.202 1.202 25 H -0.223 1.223 26 H -0.205 1.205 27 C 0.049 3.951 28 C -0.148 4.148 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.120 0.880 40 H 0.127 0.873 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.069 0.931 46 H 0.021 0.979 47 H 0.058 0.942 48 H 0.073 0.927 49 H 0.012 0.988 50 H 0.084 0.916 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.072 23.554 -10.535 25.825 hybrid contribution -0.087 -1.855 0.598 1.951 sum 0.985 21.699 -9.937 23.887 Atomic orbital electron populations 1.20302 0.84496 1.04383 1.04426 1.23943 1.00091 0.88463 1.01580 1.73845 0.89853 1.25045 1.22246 1.84762 1.21407 1.23579 1.68298 1.24912 0.99481 0.83149 1.00902 1.20578 0.88744 0.98748 1.05401 1.20980 0.91787 0.97256 1.11293 1.19480 1.03171 0.87155 0.95631 1.21536 1.05232 0.89649 0.99072 1.20808 0.75965 0.89490 0.80943 1.90695 1.54351 1.70130 1.32031 1.49769 1.67616 1.13847 1.06374 1.23200 1.03603 0.96230 0.77251 1.21547 0.96004 0.96288 0.94172 1.23032 0.99999 0.84561 0.93925 1.21500 0.93738 0.96287 1.01386 1.20993 0.95622 0.93212 0.88459 1.44289 1.07482 1.58353 1.22993 1.19459 0.94061 1.12069 1.13507 0.91747 1.25763 0.98180 0.97383 1.03233 1.70178 1.15902 1.32690 1.39240 0.85392 0.77348 0.77670 0.80337 1.20167 1.22307 1.20451 1.20627 0.83773 0.91725 0.98950 1.21830 0.99814 0.96747 0.96390 0.88856 0.90357 0.89000 0.88068 0.88256 0.87991 0.89981 0.90435 0.86955 0.87229 0.88007 0.87341 0.89315 0.93184 0.91512 0.90948 0.93080 0.97901 0.94180 0.92692 0.98847 0.91583 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.39 71.24 0.74 -0.28 16 2 C 0.02 0.33 7.33 43.58 0.32 0.65 16 3 N -0.40 -8.99 12.07 -49.56 -0.60 -9.59 16 4 O 0.08 1.64 11.20 71.68 0.80 2.44 16 5 C -0.02 -0.32 7.49 25.04 0.19 -0.14 16 6 C -0.08 -0.62 10.25 71.24 0.73 0.11 16 7 C -0.21 -3.46 5.58 -19.74 -0.11 -3.57 16 8 C -0.02 -0.26 4.76 29.85 0.14 -0.12 16 9 C -0.12 -1.74 5.51 29.85 0.16 -1.58 16 10 C 0.54 12.91 8.08 87.66 0.71 13.62 16 11 O -0.59 -19.48 16.76 -3.02 -0.05 -19.53 16 12 N -0.64 -15.01 3.46 -858.40 -2.97 -17.98 16 13 C 0.12 2.14 7.56 83.23 0.63 2.77 16 14 C -0.08 -2.10 0.83 -52.59 -0.04 -2.14 16 15 C 0.11 3.04 7.57 83.34 0.63 3.67 16 16 C -0.09 -2.65 5.26 30.57 0.16 -2.49 16 17 C 0.14 5.67 6.41 86.42 0.55 6.22 16 18 N -0.61 -29.06 2.96 -698.65 -2.07 -31.13 16 19 C -0.26 -13.87 9.56 84.03 0.80 -13.07 16 20 H 0.06 3.35 7.89 -2.91 -0.02 3.32 16 21 C -0.05 -2.73 4.89 84.86 0.42 -2.32 16 22 N -0.93 -54.11 11.21 21.65 0.24 -53.87 16 23 Si 0.96 43.75 29.59 68.60 2.03 45.78 16 24 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 26 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 27 C 0.17 7.81 5.27 86.42 0.46 8.27 16 28 C -0.11 -3.37 5.31 30.57 0.16 -3.21 16 29 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 1.01 7.65 -2.39 -0.02 0.99 16 32 H 0.10 0.60 8.14 -2.39 -0.02 0.59 16 33 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.10 0.67 8.05 -2.39 -0.02 0.65 16 35 H 0.08 1.39 8.04 -2.39 -0.02 1.37 16 36 H 0.08 1.38 7.61 -2.39 -0.02 1.36 16 37 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.10 1.38 8.10 -2.39 -0.02 1.36 16 40 H 0.11 1.53 8.09 -2.39 -0.02 1.51 16 41 H 0.09 2.37 8.06 -2.39 -0.02 2.35 16 42 H 0.05 1.69 7.53 -2.39 -0.02 1.67 16 43 H 0.07 1.78 7.95 -2.39 -0.02 1.76 16 44 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.05 2.02 7.92 -2.39 -0.02 2.00 16 46 H 0.00 0.13 7.60 -2.38 -0.02 0.11 16 47 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 48 H 0.05 2.84 5.97 -2.39 -0.01 2.82 16 49 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 50 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 51 H 0.08 2.06 8.09 -2.39 -0.02 2.04 16 Total: -1.00 -72.39 410.73 4.95 -67.44 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.91 Total: 10.04 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: 6.65 Total: 6.40 kcal Atomic # 7 Polarization: -107.17 SS G_CDS: -5.39 Total: -112.57 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: 0.75 Total: -17.09 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -72.39 4.95 -67.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050752883.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.387 kcal (2) G-P(sol) polarization free energy of solvation -72.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds